f2c1d73330061c8d0147cc9d3a259a72 *DESCRIPTION
bc490320565120e6bf1cb3ed1aeea0aa *LICENSE
e788e82a4070582e0396b569a46376c6 *NAMESPACE
b97874d252ce6ba6f04b11c120621cd5 *NEWS.md
7e84d6a5a6c3aaa8c3a5c61903569347 *R/RcppExports.R
50dfe89acf1a5e1a329a31d8498f597f *R/STList.R
8d8db454c5ba217ee8bb862e255ab6c2 *R/STclust.R
d33bffbbb53d4cc60fc4be1db87c3f4b *R/STdiff.R
fd2b696118f60c9a6eaa9759b60df85d *R/STdiff_volcano.R
85416e8fc303b716fdf934a788865ce5 *R/STenrich.R
7ac9c288465883bff1f3c8c1cc8da78a *R/STgradient.R
2c027128f854afc833e4113d489f3e74 *R/SThet.R
cb8f2f08e5910b289c79681ecd5f0d98 *R/SThet_invdist_test.R
387e6957a171f509de15b06daa1f3df6 *R/STplot.R
004a8a6a1fe8ab1b3e443bf56b7acff3 *R/STplot_interpolation.R
4a9b5829ce77817765553183e4d9eba5 *R/classDefinitions.R
74d974c571dfc4420303b6f52b388ae9 *R/compare_SThet.R
4bce3175f4d766d2f5e80b59eb6350f4 *R/detect_input.R
696dc226086ff3eb7ae35fa8cdb37c93 *R/distribution_plots.R
73967e846d810e537cab8961a486d4f3 *R/filter_data.R
56b5c10c1232016ab7ad23e7e7df472e *R/gene_interpolation.R
8884a436ceda09ea7d1605208c1afcff *R/globals.R
7e4aeef1359c34cd7f054f22578e627c *R/import_smi.R
d6964a71e49e2ac377db3ae8d6a72ba2 *R/import_visium.R
8996b6516d03d8353f010278c3bcdf6e *R/import_xenium.R
ac71e2e77d739ee486b08a84c8776744 *R/plot_counts.R
10136828d363603fb87f5d08e137ec11 *R/plot_helpers.R
650e4aae4ff34651ee80c251d373b70b *R/plot_image.R
3766dffb381f387e2fb8beeb41f793e8 *R/plot_spatial_expression.R
1817873a73aa642371246a809e49f312 *R/plot_spatial_geneset.R
2aab1735efdb0fc6c2a7b8ede7121d1f *R/plot_spatial_meta.R
4a5eb0833438f86a13aa4803903a20f4 *R/pseudobulk_samples.R
eaeb667ef82ce7deaf2a592b3f7a7eca *R/seurat_helpers.R
725d0cdecf429fb4920cc7c749db32d5 *R/summarize_STlist.R
a821f540e1877fe5a1fed3ff72099bba *R/transform_data.R
efff80fda374a01b962eadf874e547ed *R/utils.R
01622e6fdd826f32a0f8ba769a4f9f72 *R/zzz.R
b93a9f88667edb92f8913835b2279e43 *README.md
ed0ce5c5a73d18bbfc63f32e439a0902 *build/vignette.rds
385b91ad7d906f8c8fd07c2846885e3b *inst/COPYRIGHT
a0f07ba5b0be7bd96dbc28efc9029baf *inst/doc/basic_functions_vignette.R
e84558e818e3417ec36c69bbac9ce643 *inst/doc/basic_functions_vignette.Rmd
659c2ee9a50aeb364e7eb413174b33fe *inst/doc/basic_functions_vignette.html
71464f614392284205b152afdc6c4f72 *inst/err.csv
75885cd50c0a5608e0932c7acf303a4c *man/STclust.Rd
1aa54acbf442ef894b8fd71a1524471b *man/STdiff.Rd
ad1601a242e00ef3bad654e3c996c292 *man/STdiff_volcano.Rd
0775d12c3ecaf150833ef7571d5f9fbf *man/STenrich.Rd
a77fe1d17abcd6e65d9083f5fe4eee47 *man/STgradient.Rd
203db9fa40622ea55a5cf2f519fb210c *man/SThet.Rd
a2d5b096d877428dc170b62f8e6d2560 *man/STlist-class.Rd
ba6efa53c42c088de94043ae48da6698 *man/STlist.Rd
39b7490e5436c2288695be07f5501635 *man/STplot.Rd
177f937e08fe042c43173e70271bce96 *man/STplot_interpolation.Rd
59d4eafa0aa532039f4547746bf4b57f *man/compare_SThet.Rd
aeefb67c6a34a7cbb405478e83318a2e *man/dim-STlist-method.Rd
d277fa1db6bdd6c740ac42d475abf8c0 *man/distribution_plots.Rd
afcd0140ec31f68370548330f4d28e8b *man/filter_data.Rd
82477493ac0f2ab713eead183fc04e17 *man/gene_interpolation.Rd
b97285c82e8fab7ded9131c728464f33 *man/get_gene_meta.Rd
3074cc20d16681408ed334e2a78c8592 *man/load_images.Rd
06ce15dacfa023342feab427c0525641 *man/plot_counts.Rd
cb73332921e367194aac95c33d7fc2a3 *man/plot_image.Rd
a20db2d80f531662a92fa91d16f40136 *man/pseudobulk_dim_plot.Rd
10d1dfc9d67292ca1ecffd64525f760b *man/pseudobulk_heatmap.Rd
d9fa23a9b5d45d6ef15fb12969ac443d *man/pseudobulk_samples.Rd
11b1dce83b2162e05f9c929327124189 *man/show-STlist-method.Rd
ca6e25901762788522242ce3dd83bc4f *man/spatial_metadata.Rd
8316d60a93cbe34b3f0c1505302a7b18 *man/summarize_STlist.Rd
47f7f502a350f6e448014003b6c8e26e *man/summary-STlist-method.Rd
00bf031eb9791cede497bb95d2f8d0ca *man/tissue_names.Rd
9d73fa6da2d7f74562bb5859e0baf8b6 *man/transform_data.Rd
e0ed9aee192626b0a5054912b9b787c2 *src/RcppExports.cpp
32c34e4f7c919eae19e5020377a394f9 *src/seurat_helpers.cpp
11c6a0884a61838a901e1996356f0f1b *src/spatialge_helpers.cpp
30b79d6bb038a1b014ec8ee9229f2f9c *tests/testthat.R
01e58dbe08c8512c7158c58882f95dfb *tests/testthat/test-tests.R
e84558e818e3417ec36c69bbac9ce643 *vignettes/basic_functions_vignette.Rmd
f9813b23dd4a7784f30292fb12a5ca84 *vignettes/img/dir_structure.png
d749dce733ba15a23bc0c54b3a0e170f *vignettes/img/logo.png
149dcf02c8374b4257e1949d5410d633 *vignettes/img/metadata_file.png
f466689082dab1b4b5506e0d597a39f7 *vignettes/img/spatialGE_workflow_v3.png
94ad0993af094c59c6d0a8025d1c1864 *vignettes/vignette_references.bib
