c9fa7ce1ced1cecb4d97c08fa9e07082 *DESCRIPTION
fff6e6b4d3a250d7f834e4c2f266cb10 *NAMESPACE
1528f3e5b7888ea43b0d1d810fc8c0b4 *R/1000G-package.r
76d45af3198727ed33e9258478eb6b1c *R/hapsim2-functions.R
afcd2a1a4f9cbe47bc122e7b51258b95 *R/readvcf.R
f3f80f4d341874148ac025d60d418654 *R/recombination.R
7d21992c9bfe4c0cb025de8e6b5a40f8 *R/simulation.R
ac34871e33529a3abdcf12e30dde0a5e *R/writeped.R
cbe1a7fb64c64a99471ae3c2a3ee1b86 *build/vignette.rds
47f702172e3b90f385bd10fc3fb9824d *inst/CITATION
5515108f7ebbae468824ef5d60f10ab3 *inst/datasets/README.txt
3a4ccf98cbe0cb490373cd29462a4ff3 *inst/doc/ExtractingRegionsForSimulation.R
4f5cdfef851e6e7e4c87d69a57be37e5 *inst/doc/ExtractingRegionsForSimulation.Rmd
1bb66ddb19732c1e4bb22c7bff67f423 *inst/doc/ExtractingRegionsForSimulation.html
59c8ff6d96888085a6b84df0d5bde32c *inst/doc/SimulatingFamilyData.R
a0012400b0fbcd47bd0a55d3720a82ff *inst/doc/SimulatingFamilyData.Rmd
6d61c07695d41df72f3acaea27060ad3 *inst/doc/SimulatingFamilyData.html
ce9150836ccbf135ba764e33f487d6fa *inst/examples/20130606_g1k.ped
facf2890ec0558e5f0d4c8b2033f127c *inst/examples/Rplot02.pdf
1f5eda9dce11a2581cd91484d15ba4f0 *inst/examples/amelia/start_sim_14Nov2017_2000_Apo.R
5763e0e3e9627cf6cb21781c8cb04090 *inst/examples/chr4-geneticmap.txt
f87f5d88050ef3a480d009ef29e8f663 *inst/examples/examine-maf-and-correlation.R
2f1813705347e4e90bbed8866e02aac9 *inst/examples/example1-single-population.R
a744b0a5537e5e046edd4633a46d63aa *inst/examples/example1x-single-population.R
f9517547f0ef88d96a93065db2f87bbd *inst/examples/example2-population-stratification.R
3d9c30659a001deef44fe38f9fed299a *inst/examples/example2-stratification-qqplots-and-summary.R
1e9bdd8557fad70efd11b4cdda97bf3f *inst/examples/example4-population-stratification.R
d86939dfa8a584de5f5d96c012d986d3 *inst/examples/examples-from-manuscript/1
21abe8b9ccb715191718cb35e82f8206 *inst/examples/examples-from-manuscript/example1.R
e1a816a5d3d8440e7c5c38c61c3ecf31 *inst/examples/examples-from-manuscript/example2.R
69ca73d19c965e00bff3192f3e243b9d *inst/examples/examples-from-manuscript/example3.R
24d6c1aaade225f4ec2f496745a29f41 *inst/examples/examples-from-manuscript/example4.R
ae8a2140d1344d78ec85c04f7783d595 *inst/examples/extract-1000genomes-genes.R
fcee719ce2333233d91b99190e32df65 *inst/examples/extracting-vcf-files/read-and-subset-vcf.R
1192016155588e5be40435667a5e912a *inst/examples/family/Example_for_package.R
ee9ca631b58f6225096cadbd2f0c5912 *inst/examples/family/FamEvent_1.4.tar.gz
7ee0f54f7ebd6577ba010193f445c95c *inst/examples/family/IBD_family44.txt
04169a21cb69b359773770788677b9ca *inst/examples/family/Simulations_family_survival_data.R
a674ed72e69a40208e7e38d68768b7ff *inst/examples/family/data1.rdata
7f48a3ae1922ccb45cffb9c0e9e72dd9 *inst/examples/family/frailtypack_3.2.tar.gz
ff60ed30b5598b4bfbbcda0ca0f28b37 *inst/examples/family/summary_results.R
ea4355ebbd31f1b5b2552deca4377581 *inst/examples/generate-sim-cmds.R
75aa7c845849de34e49deb0c325a42f1 *inst/examples/manuscript-plot-LD.R
246ee98823ae18075494f5ab38cc6b7c *inst/examples/plot1.R
2bc31988b3df7ef8356ec436f6736c4f *inst/examples/region-chr4-93-TMEM156.vcf.gz
c4c8b3f7eadb70fb5e2624b57ba8ea73 *inst/examples/region.vcf.gz
a8093e398ed6a62d0b6701663c748bc2 *inst/examples/sample_subset1.txt
2e665e7ee89c009e2187ef069f9070cb *inst/examples/sample_subset2.txt
1b4f9b8e1b133c4981e52dece6ffaa28 *inst/examples/timings.R
ce9150836ccbf135ba764e33f487d6fa *inst/extdata/20130606_g1k.ped
5763e0e3e9627cf6cb21781c8cb04090 *inst/extdata/chr4-geneticmap.txt
c4c8b3f7eadb70fb5e2624b57ba8ea73 *inst/extdata/region.vcf.gz
cc539f96ffe580f93ea0ac7ab3aa5a2a *man/SIM.Rd
710e20d2ad86da09a71ec279b0e3e34c *man/computePairIBD1.Rd
8d752209690900d4bb9c3a9149d0042b *man/computePairIBD12.Rd
9cce6b1cad34c4199053b90632d40ac4 *man/computePairIBD2.Rd
625742a8270b4538f86d09b557dcfbb1 *man/createVCF.Rd
b39fca65f05c9f0540794c56d5f017e3 *man/crossoverCDFvector.Rd
3f5f35c100d32d236b09218358f412c8 *man/downloadGeneticMap.Rd
2e823cfe7a5298744de8c6709219b64a *man/generateChromosomeRecombinationPositions.Rd
50f001b03c776a82a28559568b877812 *man/generateFakeWholeGenomeGeneticMap.Rd
f433a59522473db8c7ebded8791c2c3e *man/generateRecombinationDistances.Rd
259e27ed5826f01ee6af8f5ac713d467 *man/generateRecombinationDistances_noInterference.Rd
9c2afd262fa1915179ed2f0114fbe2c1 *man/generateSingleRecombinationVector.Rd
498c6a4eab909a0c1e7a4758444fbf7c *man/generateUniformGeneticMap.Rd
1b979f952071f9f51dfcb52c9935aca1 *man/generateUnrelatedIndividuals.Rd
6fd1a711accac472d2d4bcda14e0810e *man/geneticMap.Rd
76ac995a58d42859ce7170ce2897470e *man/getCMfromBP.Rd
a6f114097cdcc708d20cef9776a6fbcb *man/loadSimulation.Rd
ce216a7f45d1908511ec9735b4c96471 *man/newFamily3generations.Rd
ffbd4b90b2484005bb1e3cd7e911dba3 *man/newFamilyWithOffspring.Rd
070738933c67e978bcf5c060f68f5ea2 *man/newNuclearFamily.Rd
c92641760dddafc823761296ea8e39d5 *man/pkg.opts.Rd
694b659e6956b9fc9f7f5ffdfa7f6750 *man/plotRegionalGeneticMap.Rd
ab8f19ec9479f62c5da76369e9fefa86 *man/printMatrix.Rd
26b514821cd85cc49594e9fe2511ae61 *man/readGeneticMap.Rd
262418ae1fab471ee468abc1c0c65cee *man/readGeneticMapFromFile.Rd
3c873da55796b36770fe5fc8bd241f89 *man/readVCF.Rd
6bc8c70c34a6541dada7bf9fe32194b6 *man/resetSimulation.Rd
5246f227792d8bf289c373a16b352995 *man/retrieveGenotypes.Rd
3eeb09603d253184eb9ed01e8303c19f *man/saveSimulation.Rd
81272c0ad03658960c7bb462f3ce2d71 *man/setRecombinationModel.Rd
fac3ce58b5e2cb683a5bb60090b97f94 *man/sim1000G-package.Rd
bb4e0561b4006c2094d9ec712ae6b1c1 *man/startSimulation.Rd
9f00d699ebf96dcaf5106ceef73996fc *man/subsetVCF.Rd
324f6983a81717ea632e3b9af28f118a *man/writePED.Rd
845973a039dd8dd70a79d3e8e4d27361 *tests/tests.R
12c2fbd81e99c220403c58c389c938a1 *tests/testthat.R
7fdd0247c3024f261f61372fc6f91268 *tests/testthat/test1.geneticmap.txt
2a482839dcf6c1d3e0e2b930a192c1bf *tests/testthat/test1.vcf.rdata
a596fe5d6dcd3938551b701e69d59689 *tests/testthat/test_2.R
4f5cdfef851e6e7e4c87d69a57be37e5 *vignettes/ExtractingRegionsForSimulation.Rmd
a0012400b0fbcd47bd0a55d3720a82ff *vignettes/SimulatingFamilyData.Rmd
