60f76523a2ea0f9491c215b1c899bc6f *DESCRIPTION
06697497d606721fdc52ba1e8554dfea *NAMESPACE
d9ef09aaf8dbc6885f0533b120abb501 *NEWS.md
64f7783f144e4c56f5c4e5756f1ed43e *R/HMMplot.R
a5213fbc85c01f25c9e2ba1a1757542a *R/RcppExports.R
4b6a66b4d432bdea9b83d15446d09d31 *R/SSPlotter.R
ec74c1255f64dfc439533830a0ce5a01 *R/biofam3c.R
73d302c76d63f8362ef843c5c750d24e *R/build_hmm.R
011fd09e61b251acfb85a623475a6220 *R/build_lcm.R
1e5193225e2bf2a206824528d777e058 *R/build_mhmm.R
d74a545f94415ece0a0baa99ded8f153 *R/build_mm.R
3ceb4f4b38a83baa48bc5a2f0b812a47 *R/build_mmm.R
fc7a903acf7b8c6e3f567736d13bce4a *R/check_deprecated_args.R
6e87712689034b5f11805e4b509ab0da *R/cluster_names.R
d9f903e21d718401cd47783ba3c5e0ac *R/colorpalette.R
4b8abebd092d6f3eaf5c863656497139 *R/combine_models.R
a0f798302138b6ef8e36132635957c77 *R/estimate_coef.R
13421caf8b5fec5c8c0e7248d1006b4c *R/fit_model.R
dc6f1825eee6f6540fabea7b2d8a94fe *R/forwardBackward.R
f8eee30ca06cdeb7908d709cf8a24ffc *R/gridplot.R
f9bdf63b71eaa153a892343d38eb22e8 *R/hidden_paths.R
184c19749fe07f1ddd189800c301d67c *R/hmm_biofam.R
6cae4c160a3f427bb3865355dea23a86 *R/hmm_mvad.R
de012bda2a059181216cc6504c7739b4 *R/import_seqdef.R
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48a368f9b31f80e88b4246e637a1d649 *R/is_multichannel.R
14c834ca3ea8c44d199ef418832001b1 *R/logLik.hmm.R
92e137dab65d52047375be3e905087b1 *R/logLik.mhmm.R
0f7ef897d19f20ddbf051cdb1d7c3ab7 *R/mHMMplotgrid.R
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e58c4fde354e0abae522cdc623d7cc2b *R/mc_to_sc.R
739755103ecc568d8e9427e0bd355d8b *R/mc_to_sc_data.R
944e8232daf37f872ae7836fd3e78601 *R/mhmm_biofam.R
7681e59dfe3b4386e231bd06c694b3a0 *R/mhmm_mvad.R
3e1330c86fedf3486b75cd1fd39f1975 *R/mssplot.R
4c78fbe1867be4bc67d47531296ee83c *R/plot.hmm.R
6f750ad2b02e09d6203cf7a549524ba9 *R/plot.mhmm.R
abcd988e05e342a490055b366bd2458e *R/plot.ssp.R
f32c2181f9e90697d140e3e04cde7db5 *R/plot_colors.R
9283721f01e22db1c4dd581ef782aa28 *R/posterior_probs.R
3446e391d801e4e1c533307141c73d62 *R/print.hmm.R
9347573d756c23532eed43dd6606d3b7 *R/print.mhmm.R
704f098d794a498c7791bbf3eba43503 *R/print.summary.mhmm.R
0bf74f84e0b5f2aa3881007451326df0 *R/separate_mhmm.R
38d2d6a2c589a2823dbed0ad7e9227bd *R/seqHMM-deprecated.R
50589fe1e5bbf7be63fb332a912505f8 *R/seqHMM-package.R
cd3d9eedf8948f61a6306db4ad4ec9c4 *R/simulate_hmm.R
12e1328b90bac77f06da3fa6dec22500 *R/simulate_mhmm.R
f84ec63ddfcf0a8a7a0973f1eb4b37e6 *R/simulate_pars.R
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4d22c29d81fa0c067ceece0af020adab *R/ssplot.R
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9b5148089f0a8149fb53c05023fa6b3d *R/state_names.R
e2ea829ca45ba40b7ba242568e754e54 *R/summary.mhmm.R
f6f2f9bcf231240a6918800f2b381d48 *R/trim_hmm.R
ec6f76b7339567b9a64bfac65b8d0f42 *R/vcov.mhmm.R
e3617f64f12a489e36796531d4e563ca *R/zzz.R
4e00b282455f69c57e2f89908a5d0249 *README.md
806e265430984707ebfb1e7b698b6b8f *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
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3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
a7dfb24678b528104a1c9ffcbd5c5533 *inst/CITATION
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b905b36c7bc340f78336e44eb5ac967c *inst/doc/seqHMM.Rnw
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af9649b3ba3ff52158bef99be9fc9201 *man/logLik.mhmm.Rd
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53424403c5d1ed90c2f863ba22a34d4d *man/plot.mhmm.Rd
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c9d6d07756dbfce183a803b33f5053f0 *man/vcov.mhmm.Rd
f6518af2c86fdb48ed79a786ce4469fe *src/EM.cpp
199e27bfa2f23fbefa3c0480e4d66579 *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
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1b75a0e5d8d767659a06a1fb4d83bf5f *src/objective.cpp
321faf04af33ba8e6cac3233541a1fd8 *src/objectivex.cpp
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3e0a6f1b95933f128a1c818c9d24a1a5 *src/optcoef.h
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9409935bf052c81ec19b23b287d5a1e2 *vignettes/mhmm.rds
f052d06b1b093c29c7b2ae76badedf12 *vignettes/references.bib
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cfb349b85f34bf64a4f07deec793b951 *vignettes/sc_fit.rds
b905b36c7bc340f78336e44eb5ac967c *vignettes/seqHMM.Rnw
09f6ea92004d7de6775f0f05ae68cd78 *vignettes/seqHMM_algorithms.Rnw
d45d8583fa944e84271be94f4cc31968 *vignettes/seqHMM_estimation.Rnw
a33dece560854c693ed6349f86e533ec *vignettes/seqHMM_visualization.Rnw
