2cbd8aaf2402ee65fd1359544b04b4d6 *DESCRIPTION
34c98d567960d384b859a822931aa4d6 *NAMESPACE
584981e59f782516066361e2a9b0dcff *NEWS.md
cf518e47bbb8b732de1d4bacafb895da *R/0-params.R
3ea61e72daf621d9492275e0ca5f1af2 *R/1-propr.R
cd2d60f6395dbd0ae6038e27f2d3d17e *R/2-proprCall.R
4c07a6715abf529b667a7250b9426e40 *R/3-proprViz.R
fcbd718c98219193dc44579bbdd9ec6e *R/4-propd.R
b3485e2bd708bbeef672204600c7edde *R/5-propdCall.R
a38e0e64c3f26147b262b47544786891 *R/6-propdViz.R
edde7b5752dce2638d850742443f16eb *R/7-aldex2propr.R
112e6309be1bbf114c70675c2db6e797 *R/8-get.R
436bcbf13363346f60df78265a49c552 *R/9-deprecated.R
43ba4cec7bb8a824ecda3e5705399f8c *R/9-global.R
c24c7e9ccc58cd6714193d43e8367f2f *R/9-posthoc.R
0fa06f5cf17404eb76b6e4c21359c9ff *R/9-pra.R
86d8c92a8ea22f9127776f11717050e9 *R/RcppExports.R
c9937d4abf30e0f1915c9040ec835123 *README.md
4c6fcc45257313a65dd2698ded594a1d *build/vignette.rds
85afe8e966882d64a79de4ad8f198689 *data/caneToad.counts.rda
73203b36c5c9e855bd52d9beefaf5195 *data/caneToad.groups.rda
f937a82f42500a3aec725965e09b3ac8 *data/datalist
56ae3d28264f2ee57da266bcaafea50e *data/mail.rda
adc04cddc13d546ed30be8cd05f0c29c *data/marg.abs.rda
2e1d1e2303e1f2a8a8e5699e16c3d5bd *data/pd.d.rda
8f187fc363dce0ddba84608da0712d6f *data/pd.e.rda
7c2f3c5e5bd43dc0aa8337c68d8f1342 *data/top.counts.rda
ed6a318a02091045e6fd3b1064cd7929 *data/top.lr.rda
2cbd31f95d9f3181b4e352e04095fd40 *inst/CITATION
a70ce138aa0539072568fee45989efcc *inst/doc/a_introduction.R
c056dbdd5b88e17cc42b05d0ad2a502d *inst/doc/a_introduction.Rmd
c62e1534600458c91f0d76685cceccea *inst/doc/a_introduction.html
ea1083e371d2a239a88023628cac62d1 *inst/doc/b_visualization.R
31243c2099e365e131574e035f20f99c *inst/doc/b_visualization.Rmd
6c6599400f0a3deb890a6996aac2d554 *inst/doc/b_visualization.html
18ab70ec9aa7610c236a8131c1769300 *inst/doc/d_advanced.R
b5ec3fc5ade234147ec7139cdce26955 *inst/doc/d_advanced.Rmd
4a4451d08d0e1af540b9ed12855f9876 *inst/doc/d_advanced.html
e8cc3232b104d0cf08736b6c7448b6f3 *inst/doc/e_differential.R
9c64fc84527f0003ce2e8a450e9c35e1 *inst/doc/e_differential.Rmd
cb81ad6160b83b8558ca3fc868c30194 *inst/doc/e_differential.html
3214971cbd554d2cf2de9809fa7e294d *inst/doc/f_moderation.R
da8801a37d8d0e311849213127dfdb51 *inst/doc/f_moderation.Rmd
f6f724a87a3bf58e052cbcc8c6d450a4 *inst/doc/f_moderation.html
5ac9653ce0a1d17dbb16412717220cb9 *inst/doc/g_questions.R
89fa8fd6b4d52883180ea723665ad3ef *inst/doc/g_questions.Rmd
343ff763e5a9462de79756764fa39014 *inst/doc/g_questions.html
c58d8af5df962f272ac64090a1db74a5 *man/aldex.cor.Rd
e83d907ff4983e638b01c1abe25dab26 *man/aldex.glm.Rd
c94404bec592ce30a5f70274e487a50e *man/aldex2propr.Rd
6f5ff795fa91c9b2604c7772d99d7b7f *man/all.Rd
6da71ce34dde77176b37bd2cba814b5e *man/alphaThetaW_old.Rd
fcdbf28c33d8ad3f66727b47968d5c87 *man/alphaTheta_old.Rd
28e003a8a265072a168a69d2a14736ea *man/calculateFDR.Rd
ca7c74ff68a1daef20132551a77cbabf *man/calculateFDR_old.Rd
322344b184c1eaae02464220cc9652de *man/calculateTheta.Rd
9f17b52c1566a993d582dfec9cc0e054 *man/calculateThetaW_old.Rd
b7f65e07db69697cd2635c0fe8eaa352 *man/calculateTheta_old.Rd
164a4f49b5717bee75efba4fda13fa29 *man/caneToad.counts.Rd
b5a683db516b797f5da4257e58f9ea66 *man/caneToad.groups.Rd
bd8828aab70a41d21048d4f0a211599b *man/dendroCheck.Rd
44d6f621cebf38326fbb1262f57d35ff *man/getAdj.Rd
3646c212d58dc6d48bf017b3a1d523a5 *man/getAdjacency.Rd
b0ba507426dd07dc37079c0d170d5e9e *man/getColours.Rd
2da302c0688463043e3aec0727f0de4c *man/getMatrix.Rd
c942bcdef8978b706f34c70306e8e5fb *man/getNetwork.Rd
f8b9987b569d9e38c02293eca613ad21 *man/getNormTheta.Rd
d4d57fd34a0599bedb080c025f9831db *man/getRatios.Rd
14d3a4db2e72e400b2b9f7ed87457e63 *man/getReference.Rd
1fe29a57e82ece936fb44b7bf19fb543 *man/getResults.Rd
f2c2f5318edcaaa611e1cfddc23d7330 *man/ggdend.Rd
875f44966568e6d59351f7d89b76616b *man/ivar2index.Rd
69221152f2aa792b1d70058670f79561 *man/lr2cor.Rd
0f2518fd2855492771c93678af10db80 *man/lr2glm.Rd
044d82a49965e68cd6c70594faee3bc9 *man/mail.Rd
26905fb68d766349a417955e8c512517 *man/marg.abs.Rd
2e66035a3dbe654020e3be5c2c724355 *man/migraph.Rd
7c507a39dbb3c54b01359cb436495fc1 *man/multiplot.Rd
8f8735a7da5518cb00eafca1f1654b88 *man/packageCheck.Rd
ce2aec0c0188902a727d35aab7dc4078 *man/pals.Rd
bffdd7bf361cf760620cd81309a2b8c6 *man/pd.d.Rd
bcbbf97402dcdf1ce1580b9a0806981e *man/pd.e.Rd
9791ebd88983e47b4819df36124c22d2 *man/permuteTheta.Rd
a4ecb7c7f2382fe457e51a878330a64b *man/permuteTheta_false.Rd
cb1890cb2af266c0621d097f18f75ca4 *man/permuteTheta_naive.Rd
4be09fc89c561e746133d32c722b6301 *man/permuteTheta_old.Rd
98a1f629c73b2146b7e9cf6ae1e28a6a *man/permuteTheta_prime.Rd
96939c883a4c56427863ae3a33664ae5 *man/plotCheck.Rd
8fe57b75e38a06d60dab184b516a1c53 *man/posthoc.Rd
4e702f810b64e4f7bf790bf2acdf3c4c *man/pra.Rd
b064aa001e2f68bc9c0af48331ceda66 *man/progress.Rd
ea8d79d44ece48a36ce68bec53ac29c7 *man/promptCheck.Rd
f21bcb5ad8befdc789954eff3a4b3e28 *man/propd.Rd
15356d678d0de1e032fb0e35eeef3bd2 *man/propr.Rd
d1c56c393eb511865d8e000b08c4b618 *man/proprALR.Rd
5e4cab1de9281848136e63da1e9ebd98 *man/proprCLR.Rd
24c7d0c015cba92079ae998cae4291fa *man/proprPairs.Rd
703611712156c60824612003198c3721 *man/proprPerb.Rd
e4fa556de63e2d44d21957d6a63c4724 *man/proprPhit.Rd
4bbee917d31bc028633ee3a448ab2a49 *man/proprSym.Rd
e74113bb12a583411a0d6428a5139c16 *man/proprTri.Rd
5c55a8316f4929eaac1541480e4dd9b5 *man/proprVLR.Rd
e7ed79c9ea8295690def45120757dce9 *man/qtheta.Rd
15ff584e7a89fc9eb6da44d0a6412344 *man/ratios.Rd
5c48d73343cdf3ca94179534849550c5 *man/shale.Rd
718bab977b5a22a76d6eb0e22b1731c9 *man/slate.Rd
ef9b22e76255ca54e09eecf52de9f2fb *man/top.counts.Rd
ab271f0aa7ba9dbb705c6222d9cf5653 *man/top.lr.Rd
c3bae426383b00f18a013c463c59f2a4 *man/updateCutoffs.Rd
bd975b07470fc9a358c5355998a97583 *man/visualize.Rd
6f42842ad17082a9a54e4dd3f0c2287a *man/wide2long.Rd
8c99e4198c3d88c20c8136ffcbc21c7c *src/RcppExports.cpp
fba12b82e88afc0026b7a18037010e40 *src/backend.cpp
58f3b385b2823a4ef94f6aa0caa26903 *src/backend.h
a14156d9f3f773e8a043a64fce798a7b *src/ctzRcpp.cpp
2b9d3ee10265c37f47dd2080a094b1c1 *src/deprecated.cpp
5f7a907ee2f7e4e5606491ce725a4619 *src/lr2propr.cpp
f356448004caec64cdde60e0416ba523 *src/lrm.cpp
cfb30e8074db2268bbb368e729f064a6 *src/lrv.cpp
35747f42c66aa149db50e4b187e5dc94 *src/omega.cpp
38a416384180a93d31020bdffb37ccee *tests/testthat.R
c228f0f4c768f5fdca1f86b6f6609805 *tests/testthat/test-ANOVA.R
7cdb937930516b2bfd611e6a272a1835 *tests/testthat/test-Fstat.R
cac5706ffb5cb340e4eeab7d616514f5 *tests/testthat/test-aldex2propr.R
ac7887ecf849b1f187852d14150379af *tests/testthat/test-backend.R
b2100842ca44549d7856cdfb656333aa *tests/testthat/test-getMatrix.R
f3ab07de6e50fb777ee61bd72c22a20e *tests/testthat/test-getNetwork.R
e103c2513778a659314a2440941dfa24 *tests/testthat/test-getNormTheta.R
e8ea9d79a8def306f98c1b93f8addb15 *tests/testthat/test-getRatios.R
9dbd69d7466a4f768aaa432210aa1260 *tests/testthat/test-half2mat.R
01fc6d054be51db269bfbcf6ab67f2df *tests/testthat/test-linRcpp.R
ae41511fab948f8490fb94e274f6a408 *tests/testthat/test-logratio.R
cbabe120dad75632dc4c8135a2920e57 *tests/testthat/test-lr2propr.R
36c1e4852653ebd81030704d560c4e2b *tests/testthat/test-perb.R
2c5b021d73e71e87715e7dbbfb57ea28 *tests/testthat/test-phis.R
7329ca8ef8bde680bafc57cd14605088 *tests/testthat/test-phit.R
e3d7fc3856e7c73ecf3fa8354cf2eeaf *tests/testthat/test-propd.R
64db667fa293851f631c9c0c8ff4cf24 *tests/testthat/test-propr-parallel.R
fee153a618e9faee5adfde6530322eb1 *tests/testthat/test-simplify.R
e8363c9012dd6461c783fe69cddc8f27 *tests/testthat/test-theta.R
c056dbdd5b88e17cc42b05d0ad2a502d *vignettes/a_introduction.Rmd
31243c2099e365e131574e035f20f99c *vignettes/b_visualization.Rmd
b5ec3fc5ade234147ec7139cdce26955 *vignettes/d_advanced.Rmd
9c64fc84527f0003ce2e8a450e9c35e1 *vignettes/e_differential.Rmd
da8801a37d8d0e311849213127dfdb51 *vignettes/f_moderation.Rmd
89fa8fd6b4d52883180ea723665ad3ef *vignettes/g_questions.Rmd
