a58a4c675547f1586c305d470741038c *DESCRIPTION
44e572e6c0a8f171ee6899ed60c852f0 *NAMESPACE
707712853d36e755c32428bea9700f75 *NEWS.md
d0fd4cf23278f18b0e55178d3ea85df6 *R/0-params.R
dbe78bef7d84b577c06b81192ea89227 *R/1-propr.R
5089d34f7ceddcf2c2e96c13409e9948 *R/2-proprCall.R
4c07a6715abf529b667a7250b9426e40 *R/3-proprViz.R
428892dd0607a74dad957f398395573f *R/4-propd.R
ca20236d720211900dcd0814269bc5ef *R/5-propdCall.R
6b2ead4b32dd55250ed07f7970da7bfc *R/6-propdViz.R
3e12e1e1c74fe94094f66cea545589d6 *R/7-aldex2propr.R
0d23b0b530dc6b24ca79e7c3307414f2 *R/8-get.R
436bcbf13363346f60df78265a49c552 *R/9-deprecated.R
779bc8b2b75ed826d2358fe4ab1d1b0d *R/9-global.R
36e3b5b20243244d591685587e19b69b *R/9-pra.R
86d8c92a8ea22f9127776f11717050e9 *R/RcppExports.R
0cb5f68d61c5e90d60547768394e7ab8 *README.md
0f795b30a5583ddef912ad3ca9f05549 *build/vignette.rds
85afe8e966882d64a79de4ad8f198689 *data/caneToad.counts.rda
73203b36c5c9e855bd52d9beefaf5195 *data/caneToad.groups.rda
f937a82f42500a3aec725965e09b3ac8 *data/datalist
56ae3d28264f2ee57da266bcaafea50e *data/mail.rda
adc04cddc13d546ed30be8cd05f0c29c *data/marg.abs.rda
2e1d1e2303e1f2a8a8e5699e16c3d5bd *data/pd.d.rda
8f187fc363dce0ddba84608da0712d6f *data/pd.e.rda
7c2f3c5e5bd43dc0aa8337c68d8f1342 *data/top.counts.rda
ed6a318a02091045e6fd3b1064cd7929 *data/top.lr.rda
214386d4fe680e9fd5f778370bbe1267 *inst/CITATION
661d960e5a0e87abc9b2708cef811b8c *inst/doc/a_introduction.R
13b356f0c37a5215a21c0d32ccbfe8c5 *inst/doc/a_introduction.Rmd
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82911dccb62e943e0d63c93d1b7ea0af *inst/doc/d_advanced.R
ba49707d6dbc812c59c47da5b232f8ba *inst/doc/d_advanced.Rmd
3810f583534b5ba648cb1740f285d20f *inst/doc/d_advanced.html
8ef6f7fa152bd982c5857746a92e111e *inst/doc/e_differential.R
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e4d96faab6b6070aa12aff451115e357 *inst/doc/g_questions.Rmd
221f0d78bf65d1f024cfa7cf231e3d8f *inst/doc/g_questions.html
c58d8af5df962f272ac64090a1db74a5 *man/aldex.cor.Rd
e83d907ff4983e638b01c1abe25dab26 *man/aldex.glm.Rd
c94404bec592ce30a5f70274e487a50e *man/aldex2propr.Rd
545330dc2d6d26c8b462c3eab36f519b *man/all.Rd
6da71ce34dde77176b37bd2cba814b5e *man/alphaThetaW_old.Rd
fcdbf28c33d8ad3f66727b47968d5c87 *man/alphaTheta_old.Rd
28e003a8a265072a168a69d2a14736ea *man/calculateFDR.Rd
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164a4f49b5717bee75efba4fda13fa29 *man/caneToad.counts.Rd
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bd8828aab70a41d21048d4f0a211599b *man/dendroCheck.Rd
44d6f621cebf38326fbb1262f57d35ff *man/getAdj.Rd
3646c212d58dc6d48bf017b3a1d523a5 *man/getAdjacency.Rd
2da302c0688463043e3aec0727f0de4c *man/getMatrix.Rd
c942bcdef8978b706f34c70306e8e5fb *man/getNetwork.Rd
d4d57fd34a0599bedb080c025f9831db *man/getRatios.Rd
14d3a4db2e72e400b2b9f7ed87457e63 *man/getReference.Rd
1fe29a57e82ece936fb44b7bf19fb543 *man/getResults.Rd
f2c2f5318edcaaa611e1cfddc23d7330 *man/ggdend.Rd
875f44966568e6d59351f7d89b76616b *man/ivar2index.Rd
69221152f2aa792b1d70058670f79561 *man/lr2cor.Rd
0f2518fd2855492771c93678af10db80 *man/lr2glm.Rd
044d82a49965e68cd6c70594faee3bc9 *man/mail.Rd
26905fb68d766349a417955e8c512517 *man/marg.abs.Rd
2e66035a3dbe654020e3be5c2c724355 *man/migraph.Rd
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8f8735a7da5518cb00eafca1f1654b88 *man/packageCheck.Rd
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9791ebd88983e47b4819df36124c22d2 *man/permuteTheta.Rd
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cb1890cb2af266c0621d097f18f75ca4 *man/permuteTheta_naive.Rd
4be09fc89c561e746133d32c722b6301 *man/permuteTheta_old.Rd
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4e702f810b64e4f7bf790bf2acdf3c4c *man/pra.Rd
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ea8d79d44ece48a36ce68bec53ac29c7 *man/promptCheck.Rd
f21bcb5ad8befdc789954eff3a4b3e28 *man/propd.Rd
dddbee8268a552ea83fe5ad97baa9422 *man/propr.Rd
d1c56c393eb511865d8e000b08c4b618 *man/proprALR.Rd
5e4cab1de9281848136e63da1e9ebd98 *man/proprCLR.Rd
24c7d0c015cba92079ae998cae4291fa *man/proprPairs.Rd
703611712156c60824612003198c3721 *man/proprPerb.Rd
e4fa556de63e2d44d21957d6a63c4724 *man/proprPhit.Rd
4bbee917d31bc028633ee3a448ab2a49 *man/proprSym.Rd
e74113bb12a583411a0d6428a5139c16 *man/proprTri.Rd
5c55a8316f4929eaac1541480e4dd9b5 *man/proprVLR.Rd
e7ed79c9ea8295690def45120757dce9 *man/qtheta.Rd
15ff584e7a89fc9eb6da44d0a6412344 *man/ratios.Rd
5c48d73343cdf3ca94179534849550c5 *man/shale.Rd
718bab977b5a22a76d6eb0e22b1731c9 *man/slate.Rd
ef9b22e76255ca54e09eecf52de9f2fb *man/top.counts.Rd
ab271f0aa7ba9dbb705c6222d9cf5653 *man/top.lr.Rd
e35e2692a61acb2c1d143cc72fe05828 *man/updateCutoffs.Rd
bd975b07470fc9a358c5355998a97583 *man/visualize.Rd
6f42842ad17082a9a54e4dd3f0c2287a *man/wide2long.Rd
8c99e4198c3d88c20c8136ffcbc21c7c *src/RcppExports.cpp
fba12b82e88afc0026b7a18037010e40 *src/backend.cpp
58f3b385b2823a4ef94f6aa0caa26903 *src/backend.h
a14156d9f3f773e8a043a64fce798a7b *src/ctzRcpp.cpp
2b9d3ee10265c37f47dd2080a094b1c1 *src/deprecated.cpp
5f7a907ee2f7e4e5606491ce725a4619 *src/lr2propr.cpp
f356448004caec64cdde60e0416ba523 *src/lrm.cpp
cfb30e8074db2268bbb368e729f064a6 *src/lrv.cpp
35747f42c66aa149db50e4b187e5dc94 *src/omega.cpp
38a416384180a93d31020bdffb37ccee *tests/testthat.R
7cdb937930516b2bfd611e6a272a1835 *tests/testthat/test-Fstat.R
cac5706ffb5cb340e4eeab7d616514f5 *tests/testthat/test-aldex2propr.R
ac7887ecf849b1f187852d14150379af *tests/testthat/test-backend.R
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f3ab07de6e50fb777ee61bd72c22a20e *tests/testthat/test-getNetwork.R
e8ea9d79a8def306f98c1b93f8addb15 *tests/testthat/test-getRatios.R
9dbd69d7466a4f768aaa432210aa1260 *tests/testthat/test-half2mat.R
01fc6d054be51db269bfbcf6ab67f2df *tests/testthat/test-linRcpp.R
ae41511fab948f8490fb94e274f6a408 *tests/testthat/test-logratio.R
cbabe120dad75632dc4c8135a2920e57 *tests/testthat/test-lr2propr.R
36c1e4852653ebd81030704d560c4e2b *tests/testthat/test-perb.R
2c5b021d73e71e87715e7dbbfb57ea28 *tests/testthat/test-phis.R
7329ca8ef8bde680bafc57cd14605088 *tests/testthat/test-phit.R
e3d7fc3856e7c73ecf3fa8354cf2eeaf *tests/testthat/test-propd.R
fee153a618e9faee5adfde6530322eb1 *tests/testthat/test-simplify.R
e8363c9012dd6461c783fe69cddc8f27 *tests/testthat/test-theta.R
13b356f0c37a5215a21c0d32ccbfe8c5 *vignettes/a_introduction.Rmd
8338f7da4ae675b8053dd2c0adb12e05 *vignettes/b_visualization.Rmd
ba49707d6dbc812c59c47da5b232f8ba *vignettes/d_advanced.Rmd
29c0446d35b4860cc32a2a27a5a35b0e *vignettes/e_differential.Rmd
9520b147409a3c4a92d4c4cb83625b54 *vignettes/f_moderation.Rmd
e4d96faab6b6070aa12aff451115e357 *vignettes/g_questions.Rmd
