29d957c547ae51802ee301ae74acae4f *DESCRIPTION
b956389d65d6ee7aac86134056fe88c5 *NAMESPACE
39d9cfa7713a702e47dda3e9d52df770 *R/RcppExports.R
8791ab1293bc3c559280645a40cc3422 *R/accessory_functions.R
2e44a3a3163aaf8b93bfc371dcf96633 *R/polyqtlR_functions.R
f0020477c2596362c3eeb937d6c4c48c *R/roxygen_datasets.R
44de50d1e9703229de38471bf2c6d705 *R/sysdata.rda
0898a54715aeee9632cdfb92dcdfa49d *build/vignette.rds
aaebbfb12c4d92aedff03e4565d1d944 *data/BLUEs.pheno.rda
f333a9063ce690d28b862cd2910401ef *data/GIC_4x.rda
135203188becdcf4545d3a9aa4cabfa6 *data/IBD_4x.rda
66ab3b4e87140569e78ffc9e79f4715a *data/Phenotypes_4x.rda
d59cc1e74a229189c0fbec74d519797d *data/Rec_Data_4x.rda
5b7ace00d4ef59c66a95f4e0f8130aad *data/SNP_dosages.4x.rda
9094fb3060a916b5fbb32dbea622f437 *data/phased_maplist.4x.rda
442a5c48d4df6091b7f0a7b41b654979 *data/qtl_LODs.4x.rda
a84bcfe81f18788a89bce3796834b0df *data/segList_2x.rda
2d3e605652c71a4c9c0c3584a809561c *data/segList_3x.rda
97d214fbf78eb984c594c52a759a94ce *data/segList_4x.rda
38d45136574b3bbda0cc268ca0fb812c *data/segList_6x.rda
2251364798c65758a6d46b91071852dd *inst/doc/polyqtlR_vignette.R
99d7ac64d293799be30c0222ebe4ffd9 *inst/doc/polyqtlR_vignette.html
77698872cb34067e9a161b143f6a97e6 *inst/doc/polyqtlR_vignette.rmd
ce2894923fdc4c1770c8426db98405b1 *man/BLUE.Rd
09720a5cd4e68a6bc53e8e6d8f4e3220 *man/BLUEs.pheno.Rd
101fd22eeeea25b9f8f0b32dbc484a30 *man/GIC_4x.Rd
bdd66978886d84be1f7c1776e4b0301f *man/IBD_4x.Rd
8a08f7e9c598d8ea0c28f15887bce742 *man/NettletonDoerge.Rd
94124d86f870dd8b97112d4fc42bfbd5 *man/Nstates.fun.Rd
2db8d401f232613dc06ca3bd45cd2c65 *man/PVE.Rd
d9cf4ebff1e2bbc580d95401c7162b00 *man/Phenotypes_4x.Rd
924f59108e0cfac86e17d45a359c3da1 *man/QTLscan.Rd
c1b68520b54d878d4f3a13e766b91bd7 *man/Rec_Data_4x.Rd
0ab119459160fb7afb92615aad81ad47 *man/SNP_dosages.4x.Rd
58c89eb71709cacd126243c4f21c1495 *man/TM.biv.2.Rd
5469aaa8239b195db97fd67007e1c29d *man/TM.biv.4.Rd
e08cd13d2a4819e786953edeb0992314 *man/TM.biv.6.Rd
9b05a5a3b2bcb39ec6600896a6fa2bfe *man/TM.hex.Rd
6f6b3804b6bd08db6b8bbd1b61ec2780 *man/TM.quad.Rd
048f6ed62dc490e255a6d21301d27737 *man/TMfun.2x_B.Rd
a0bcb348d1e9d11a18f2fed3e0042b9b *man/TMfun.3x_BB.Rd
d034ba6eb20a1da70e7dd8be883e5c4f *man/TMfun.3x_QB.Rd
9639412a78619797fc785e71d93658d9 *man/TMfun.4x_BB.Rd
bd523b57571510c5501be8cf2205c0c4 *man/TMfun.4x_BQ.Rd
8dd739cbe85662de4d51cd58e91fd018 *man/TMfun.4x_QB.Rd
41a72e6ea29bc07cffda520cfeb3948f *man/TMfun.4x_QQ.Rd
78285680028e4a5aa453071ecfb84e5b *man/TMfun.6x_BB.Rd
82141d82dd98bd33b56fc0353dae68e4 *man/TMfun.6x_BH.Rd
3657dac1339c39d1cc0e57be8e7e8160 *man/TMfun.6x_HB.Rd
98cc5162d8a4e67c95139bda2c4c16be *man/bivTM.Rd
1a1c46e289bd2d89c35feefb54bda36a *man/bx.Rd
2ba57a4b7008ba6b02d6ce8f5275061c *man/colour.bar.Rd
8239e8c45e54734c73f42f5a4bce6bf0 *man/convert_mappoly_to_phased.maplist.Rd
681da87c6b575719b0e8298f20935933 *man/count_recombinations.Rd
dafbedf7132a7ac2c3ecba6e78466a54 *man/estimate_GIC.Rd
4204b6e385b54d79f38baa89e6211d76 *man/estimate_IBD.Rd
73b160e35cc2bb02d4c625a0dc030cb5 *man/exploreQTL.Rd
75f77809096423f3837d31c33723ccb6 *man/fast_IBD.Rd
9576aa1d813b674d5e81b189954c348f *man/fast_permute.Rd
986274a9778acdb1d696cc5dc5659263 *man/fx.Rd
7b278f9a0ce50b5231ca198986661fd7 *man/hexTM.Rd
73db86b359c99d666da378c5f9139c07 *man/hexa.list.Rd
012eb0b3e522523c2d4edf68157e2708 *man/hmm_IBD.Rd
282d284cd9a111db5b1e9ff7213279c8 *man/import_IBD.Rd
fa969a126d4b7717398ab4ff23b32ade *man/impute_dosages.Rd
7d80d58bd578e1834c5ed45bb27f20d1 *man/list.depth.Rd
ab8f835775e6dbbce91cbb6f4c50a4c8 *man/mapseq.Rd
58b96a196de0c141436812b2b98f1c07 *man/meiosis_report.Rd
6a94c340e6233db144c513a4f71a2e17 *man/phased_maplist.4x.Rd
36338126260c7c9a95b729785ed36898 *man/plotLinearQTL.Rd
28c6926b2b2c5f3e3b0126f7dbde5af1 *man/plotLinearQTL_list.Rd
b0a8b72747f5d731d91ccf213c68c370 *man/plotQTL.Rd
6f9e802d4328d901026f12b89f7736fe *man/plotRecLS.Rd
e34957203abd2ac56ef187ec257510f2 *man/polyqtlR.Rd
17d174b141fc54786deda214e4273781 *man/probgeno_df_to_array.Rd
fb42aa5f14a1b706262ffbad2faa876c *man/qtl_LODs.4x.Rd
281fbff6ea729cd0d9c22cbf3b170719 *man/quadTM.Rd
58f942e6a4a576bd8131c0432aa815f0 *man/rem.hex.Rd
fb95a33620574621ffa8a51f4669ddbf *man/rem.quad.Rd
707ee4870d6dab671612697ee408aa55 *man/segList_2x.Rd
030195bd30609eb8059cd63fced128da *man/segList_3x.Rd
66e6044622a12319dc4223b10832a1d4 *man/segList_4x.Rd
528cd219e172b2f6cd1fbc01286fe640 *man/segList_6x.Rd
82850b422086c934d3c63cc27a21c6fa *man/segMaker.Rd
15e045a6d20fd2fc93cc132fc9e6ffe4 *man/singleMarkerRegression.Rd
048f774c4c7544f11f1fa2a399070bb0 *man/spline_IBD.Rd
f3ece8b4e9a79e65ce76886932295932 *man/state_fun.Rd
43c0baafd8734b67da04e9487b2bae1d *man/test_IBD_list.Rd
a723179e6759c8b9a46df9556d8ae1c0 *man/test_dosage_matrix.Rd
85a1417216a46773c4f7f9091a6f3dda *man/test_probgeno_df.Rd
b393c39f7ccb89f13cb32f0285b09c2e *man/thinmap.Rd
8c526586fd43bd2e7b30d2dc0a78e3bf *man/visualiseGIC.Rd
cb13d75e4e233d05039637f6fa48661b *man/visualiseHaplo.Rd
35dfc326ea68e53ea401935b6d22feab *man/visualiseQTLeffects.Rd
84b1abbb408fd5e01582f1602fef8115 *man/weighted.var.Rd
821e3e8faf46417a0c83ce995867bc86 *man/write.logheader.Rd
e0fed6d91aeab5fb1e8ce4c3bd2328a2 *src/Makevars.win
3866f8d20c9804bb967e0d634ba85cd8 *src/RcppExports.cpp
eeec9a2475064178dbe9f791320b3b74 *src/forwardbackward.cpp
90d8e6a03693d8a11988271cd217bc6f *vignettes/IBD_4x_DR.RDS
5642a2cd209e0d41d8e58c50964efa3a *vignettes/bibliography.bib
2a525a4d0bfde9865b47c532ce586782 *vignettes/biomed-central.csl
f6621f2b39ab7790d86cd546bda38a81 *vignettes/figures/Noisy_IBD.png
070be1a00318238548191a5da1e8b0d7 *vignettes/figures/fish_hom1.png
20181da0be06e02ab648c71a6ed91139 *vignettes/figures/mr1.png
556f9fdee231756746a0b0856e5a858a *vignettes/figures/mr2.png
db299d22743d5c799a421db7fee78498 *vignettes/figures/qtl_effects.png
d579adf784ce973c204afd1d16f1e518 *vignettes/noisyIBD.RDS
77698872cb34067e9a161b143f6a97e6 *vignettes/polyqtlR_vignette.rmd
37d8c47385c448df4d10a269421029c9 *vignettes/qtl_LODs.4x.RDS
6801943a5f61de3311dd0ea290d920d7 *vignettes/qtl_LODs.4x_cof_fastpermute.RDS
2efa676d135ed7bb03913991b6911b1c *vignettes/qtl_LODs.4x_cofactor.RDS
a1a7c27c3181de5109b5b12749ed9170 *vignettes/qtl_LODs.4x_fastpermute.RDS
7d195a9a21afdc337c810ffd696b74e4 *vignettes/qtl_LODs.4x_perm.RDS
8098d72f113d02f469b1e0c0174c9e7f *vignettes/qtl_SMR.4x.RDS
964a95e96fe5f91b420188d5b1809775 *vignettes/visHap1.RDS
ce46ceeded57487c1fefe1bd60e10c02 *vignettes/visHap2.RDS
