fdd2fd14f9b55de82cf5602c9c00086d *DESCRIPTION
8b42653d9bbcac74b8b542fd148d9ccd *NAMESPACE
2275abf44d9f02fa69053a77f95a7082 *NEWS.md
999993b8b60fde90951bd9e9a47caae8 *R/RcppExports.R
23668841dd371196e6324b434fd1e4c0 *R/burnin-phybreak.R
07a89b1e54e14dc7bdd2793ffcc70587 *R/get-current.R
4c7b1ded7f2fb86e1af5baaa75bb7e1a *R/infectorsets.R
8668504f727e4e7900e9a5602b117092 *R/logLik-phybreak.R
2c68237c95af3d73c2a3214e9815bc53 *R/make-phyloclass.R
e4435057fdb3782d58f294c4006bfa03 *R/mcmc-environment-functions.R
349e50f7aee516bad92aec9effd87bbf *R/mcmc-updatehost-paths.R
77c541bae8cc5f96470bcf0df27ce769 *R/mcmc-updateparameters.R
0962e34138947a4f4f744ab3aa10275e *R/phybreak-class.R
43745be127a1743d36fded375d3e1f83 *R/phybreak.R
08dfb9e417ed914bca1618f462f3b224 *R/phylotree.R
0c5c2686032fd7ee33e30cc53db1620b *R/plot-phybreak.R
5f3ad6cb340046c5363c3a3d609ce3dc *R/sample-minitrees.R
f547a54c9d0c0b1374f55f4ffd1f2a28 *R/sample-phybreak.R
341f577df932d5e7b05b8ed8cce97266 *R/sim-phybreak.R
569218c1abdc46f4858cf4b19a2f7ad6 *R/thin_phybreak.R
c28b3065ce578790f9b29b4b5a8209b6 *R/transtree.R
2d8e5b736173be88231220e8321b9cc8 *README.md
77851517ba31d1bae8f5d8df39d5bc5d *inst/CITATION
bd84479e9b0ed3590f85751546214b57 *man/burnin.phybreak.Rd
bc9d86a63bc6fb04038b2f45493b6c6f *man/get.phybreak.Rd
2e043e0ba89ca1c7d412bf1c6e277a2b *man/infectorsets.Rd
2fe4309ae278f8ae7521502eed08e189 *man/logLik.phybreak.Rd
2407bed352a9a6a73efe636889234a64 *man/phybreak.Rd
c19c5b93b3cfd8a6bd97b1d7cf274072 *man/phylotree.Rd
4d1a089747c38701abba03ee2c21d734 *man/plot.phybreak.Rd
98649c83c0bf0e13f7636247f540735b *man/sample.phybreak.Rd
1ca357440c73724a7523695a05c91439 *man/sim.phybreak.Rd
bca6f3f48f3e70545a69a986f3786ad3 *man/thin.phybreak.Rd
1a62415085ca2a7fc67f7a824bf269fb *man/transtree.Rd
fa997e3de470c121cbd8d7e9696ebf5e *src/CCphylo_support.cpp
efc114041bfbac6a48eb50c30c51fc86 *src/CCphylo_support.h
0677b5281e91be9f7699f0c5ad187f47 *src/CCphylotree.cpp
7c4084809ef633acf64b308d712576ea *src/CCtrans_support.cpp
c28224601dd5c84fba5c1a11f061b896 *src/CCtrans_support.h
00968a5ed71351b39c8bd7aed3f92194 *src/CCtranstree.cpp
762432fa3f4e2bbee41de35d2b85c7b2 *src/RcppExports.cpp
5543c555a04ec60e1c6d6fef87b85815 *src/likseq.cpp
e827b6c89e28592de36abcb07bdf38a0 *src/likseqenv.cpp
044d956a46af43559b82586dad2d2992 *src/mcctree.cpp
f810f0a051cbccfcd24be9873d8ce5b3 *src/mtcctree.cpp
78b645e4ffe16953411f121c1a28f76c *src/ptr.cpp
56c15c8f7bf476a5c1fd955cd0498a97 *src/sctwh3.cpp
