# Generated by roxygen2: do not edit by hand

S3method("afreq<-",marker)
S3method("afreq<-",ped)
S3method("chrom<-",list)
S3method("chrom<-",marker)
S3method("chrom<-",ped)
S3method("famid<-",ped)
S3method("genotype<-",marker)
S3method("genotype<-",ped)
S3method("mutmod<-",list)
S3method("mutmod<-",marker)
S3method("mutmod<-",ped)
S3method("name<-",list)
S3method("name<-",marker)
S3method("name<-",ped)
S3method("posCm<-",marker)
S3method("posCm<-",ped)
S3method("posMb<-",marker)
S3method("posMb<-",ped)
S3method(afreq,marker)
S3method(afreq,ped)
S3method(alleles,marker)
S3method(alleles,ped)
S3method(allowsMutations,default)
S3method(allowsMutations,list)
S3method(allowsMutations,marker)
S3method(allowsMutations,ped)
S3method(as.data.frame,ped)
S3method(as.matrix,ped)
S3method(as.ped,data.frame)
S3method(chrom,list)
S3method(chrom,marker)
S3method(chrom,ped)
S3method(emptyMarker,default)
S3method(emptyMarker,list)
S3method(emptyMarker,marker)
S3method(emptyMarker,ped)
S3method(famid,ped)
S3method(format,marker)
S3method(genotype,marker)
S3method(genotype,ped)
S3method(isXmarker,default)
S3method(isXmarker,list)
S3method(isXmarker,marker)
S3method(isXmarker,ped)
S3method(labels,list)
S3method(labels,ped)
S3method(mutmod,list)
S3method(mutmod,marker)
S3method(mutmod,ped)
S3method(nAlleles,default)
S3method(nAlleles,list)
S3method(nAlleles,marker)
S3method(nAlleles,ped)
S3method(nTyped,default)
S3method(nTyped,list)
S3method(nTyped,marker)
S3method(nTyped,ped)
S3method(name,list)
S3method(name,marker)
S3method(name,ped)
S3method(plot,ped)
S3method(plot,pedList)
S3method(plot,singleton)
S3method(posCm,marker)
S3method(posCm,ped)
S3method(posMb,marker)
S3method(posMb,ped)
S3method(print,marker)
S3method(print,nucleus)
S3method(print,ped)
S3method(subset,ped)
export("afreq<-")
export("chrom<-")
export("famid<-")
export("founderInbreeding<-")
export("genotype<-")
export("mutmod<-")
export("name<-")
export("posCm<-")
export("posMb<-")
export(addChildren)
export(addDaughter)
export(addMarkers)
export(addParents)
export(addSon)
export(afreq)
export(alleles)
export(allowsMutations)
export(ancestors)
export(ancestralPed)
export(as.ped)
export(as_kinship2_pedigree)
export(branch)
export(breakLoops)
export(children)
export(chrom)
export(connectedComponents)
export(cousinPed)
export(cousins)
export(descendants)
export(doubleCousins)
export(doubleFirstCousins)
export(emptyMarker)
export(famid)
export(father)
export(females)
export(findLoopBreakers)
export(findLoopBreakers2)
export(founderInbreeding)
export(founders)
export(fullSibMating)
export(genotype)
export(getAlleles)
export(getComponent)
export(getFrequencyDatabase)
export(getLocusAttributes)
export(getMap)
export(getMarkers)
export(getSex)
export(grandparents)
export(halfCousinPed)
export(halfSibPed)
export(halfSibStack)
export(hasCommonAncestor)
export(hasInbredFounders)
export(hasMarkers)
export(hasParentsBeforeChildren)
export(hasSelfing)
export(hasUnbrokenLoops)
export(has_common_ancestor)
export(has_inbred_founders)
export(has_parents_before_children)
export(has_selfing)
export(has_unbroken_loops)
export(inbreedingLoops)
export(internalID)
export(is.marker)
export(is.markerList)
export(is.ped)
export(is.pedList)
export(is.singleton)
export(isXmarker)
export(is_Xmarker)
export(leaves)
export(linearPed)
export(males)
export(marker)
export(mendelianCheck)
export(mergePed)
export(mother)
export(mutmod)
export(nAlleles)
export(nMarkers)
export(nTyped)
export(name)
export(nephews_nieces)
export(nonfounders)
export(nuclearPed)
export(offspring)
export(parents)
export(parentsBeforeChildren)
export(parents_before_children)
export(ped)
export(pedsize)
export(peelingOrder)
export(plotPedList)
export(posCm)
export(posMb)
export(quadHalfFirstCousins)
export(randomPed)
export(readFrequencyDatabase)
export(readPed)
export(relabel)
export(removeIndividuals)
export(removeMarkers)
export(reorderPed)
export(restorePed)
export(restore_ped)
export(selectMarkers)
export(selfingPed)
export(setAlleles)
export(setFrequencyDatabase)
export(setLocusAttributes)
export(setMarkers)
export(siblings)
export(singleton)
export(sortGenotypes)
export(spouses)
export(subnucs)
export(swapSex)
export(tieLoops)
export(transferMarkers)
export(typedMembers)
export(unrelated)
export(untypedMembers)
export(validatePed)
export(validate_ped)
export(whichMarkers)
export(writePed)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.size)
importFrom(graphics,grconvertX)
importFrom(graphics,grconvertY)
importFrom(graphics,layout)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(stats,rpois)
importFrom(stats,setNames)
importFrom(utils,modifyList)
importFrom(utils,read.table)
importFrom(utils,write.table)
