2473dcfcfec1dd8998769aaadef55b2d *DESCRIPTION
15745d827961c41bc26d3ab4cfced7a0 *NAMESPACE
1d3dd7f4e02ee2f3451bb060c1768384 *NEWS.md
a63e4c83e912aa87d6e0600aa464e14a *R/RcppExports.R
d36f358ce5534e9a23ffb7e50b96aa9c *R/bed2matrix.R
af042936ef7e987a8408c599511641f6 *R/iram.R
e0c62684bff50a2e3134a75cc78ccb0c *R/pcadapt.R
1b7234990bdfd451bbfad6cd2791bddc *R/pcadaptRead.R
df08de38a9bf9da3b841ebe1c68082ad *R/pcadaptUtils.R
5b9f7202e92747a13aa5724daa9f28db *R/plotUtils.R
8e9c345d5f1e790a25e6d0344bdf54ee *R/vcfConverter.R
c2e8ff7f3bbe33e5d50ce393e402a87f *R/writebed.R
7a0e6d1519d2e9037fa5b4bce0ed4647 *README.md
548a5de09ea1bf150f6597a9b95bbac9 *inst/CITATION
e5a6965b1c4faed24178d0ae8d14daa5 *inst/WORDLIST
ef4834e7f9855c5636f699d4fe3ce1ad *inst/extdata/SSMPG2017.rds
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.bed
9bf25f77311c895a0e0d4baf28e16293 *inst/extdata/geno3pops.bim
2733f83a057e300db098e4106883cfcb *inst/extdata/geno3pops.fam
34ff333489331f3ff7fc07cf4056301c *inst/extdata/geno3pops.lfmm
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.lfmm.bed
ae87c6365f14706eaf0eeec5db9a5661 *inst/extdata/geno3pops.pcadapt
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.pcadapt.bed
45ceab72851bc26d57fda69a865a7b7c *inst/extdata/missing.bed
7c3e98fb1b047f5a7a62d2e5e7230af3 *inst/extdata/missing.bim
b9f7c6dbf0565733761fabf9b7efa29e *inst/extdata/missing.fam
e2617ee63db0562687d78307c8130b2b *inst/extdata/missing.lfmm
d190a2d03f4073611e0918f5a861ca0f *inst/extdata/missing.pcadapt
2573fb3ebb2c51aff2f623319d6891a4 *inst/extdata/pool3pops
572b2bc85fd6d6898d5a9e0579a8615b *inst/include/pcadapt/bed-acc.h
e69c3ce9e0ddaa827badf182aa34f6e0 *inst/include/pcadapt/mat-acc.h
81051bcc2cf1bedf378224b0a93e2877 *inst/shiny-examples/app-pcadapt/global.R
deb4cb10faf4b919b16efe25cc6e2f9f *inst/shiny-examples/app-pcadapt/rsconnect/shinyapps.io/keurcien/app-pcadapt.dcf
89d50fc09203439eb277e197af158994 *inst/shiny-examples/app-pcadapt/server.R
f4967d2b1b89416035939c386b200ef2 *inst/shiny-examples/app-pcadapt/server/tab-histogram.R
33056feda80665a798a37e30e045881d *inst/shiny-examples/app-pcadapt/server/tab-manhattan.R
9cfbf9dcdc3e46f24d13e9b784ed8322 *inst/shiny-examples/app-pcadapt/server/tab-outlier.R
e0d79ddfe69f78eb067bc395ad58931c *inst/shiny-examples/app-pcadapt/server/tab-pca.R
324dae0622526fa4ae10665ee9a4d970 *inst/shiny-examples/app-pcadapt/server/tab-rcommand.R
24ad4b2e2514ba82c1c7a5fd8ac4c4ed *inst/shiny-examples/app-pcadapt/server/tab-screeplot.R
1e60b8746dc4b2257a7cd581a96103e5 *inst/shiny-examples/app-pcadapt/ui.R
64a2eaf2d96a6dd5ee0fa596206d5c3a *inst/shiny-examples/app-pcadapt/ui/helpers.R
521d97f51be45f06253e5d51da4bf923 *inst/shiny-examples/app-pcadapt/ui/tab-histogram.R
8201d4a175807a029497bb7f20fa61d5 *inst/shiny-examples/app-pcadapt/ui/tab-introgression.R
afbad398c7931873dcf92a21827daa55 *inst/shiny-examples/app-pcadapt/ui/tab-local-adaptation.R
5d63a8f1d8fc602bf994152119e7f38b *inst/shiny-examples/app-pcadapt/ui/tab-manhattan.R
91f735f881fc76bbd45b420420e093fd *inst/shiny-examples/app-pcadapt/ui/tab-outlier.R
c78a09489a95af16c38830115f86d879 *inst/shiny-examples/app-pcadapt/ui/tab-pca.R
1cac662c7f39c5aa6d129d73d70adc60 *inst/shiny-examples/app-pcadapt/ui/tab-rcommand.R
fe090afb4615a916e9fdbe3c3969312f *inst/shiny-examples/app-pcadapt/ui/tab-screeplot.R
f5d7cbb2568fda60c030ce71370f3329 *inst/shiny-examples/app-pcadapt/www/busy.js
fe4c379e56e149f06b739144a0e487a2 *inst/shiny-examples/app-pcadapt/www/style.css
18ee71478d1efa978e7828c722160a0f *inst/testdata/full.rds
ceab40bc0cd7933c3aafb55928f0271e *inst/testdata/novar.bed
9b8370c0de749416d065d8697dd5f4d7 *inst/testdata/novar.bim
b9f7c6dbf0565733761fabf9b7efa29e *inst/testdata/novar.fam
764264ea2b95868265f0f37043d5b669 *inst/testdata/pcadapt_v3.rds
ea4493f2a0e1ed27c1e8eb064d960cfb *inst/testdata/to-compare.rds
245a5e7a2ebe0db98cbbf70758b2c15d *man/bed2matrix.Rd
ce0cd0bf51dff1549b03bb08acb8f178 *man/get.pc.Rd
44c1a9f3da73e45d684b3189b39dcee3 *man/get.pop.names.Rd
10a2152f677afd9959cfb043f241f5af *man/get.score.color.Rd
2f727559a474c3fcb5b32c0e52c07758 *man/get_statistics.Rd
20694caee7af8ce6daf6c8dcce2812d5 *man/hist_plot.Rd
e6e7517cefab74e1540fe3f265990439 *man/manhattan_plot.Rd
a5aa1764dd16a10d61bc52154f15e083 *man/pcadapt.Rd
1c3ad2e76149ce939d6b38ea00f7daee *man/ped2pcadapt.Rd
b6b3d9e4466f38e0972d9ed6fb8ef52d *man/plot.pcadapt.Rd
4d3c6cca7e889b2df382aebf27ffd1dc *man/print_convert.Rd
05bb01604d6fef5918cb0462c50d8d52 *man/qq_plot.Rd
53e3525299f7457f7a989a1491d46c3c *man/read.pcadapt.Rd
d2f3a135abe81805c09cca77624d6108 *man/run.pcadapt.Rd
bcc9c7274396c9c27c302a5f10531d59 *man/score_plot.Rd
0860ccfdd75a316ae789f1b5a78fdf31 *man/scree_plot.Rd
2698bb8044fa244427cafa1dc3b3117d *man/vcf2pcadapt.Rd
d96bf2d32f339d26e033df0023ee9657 *man/vcf_convert.Rd
09b24eb99a45c900f8db822797316343 *man/writeBed.Rd
3cd7090588178e6d9f1799cf13e37aaa *src/Makevars
0d3764e3f8b3ea00c15ba6e061241f0d *src/RcppExports.cpp
b6c8bb1980870882577bbfd691194929 *src/af.cpp
6e7482a43b6f9fa01ab9ab9366a389d4 *src/bed-acc-xptr.cpp
f9cf5c3bb3b956fae98472e61c0493e3 *src/bed2matrix.cpp
f6f5562084bdba6afaff1089ebf9dadc *src/clumping.cpp
3f534ce91a063d14483cc437a9be78b8 *src/linear-regression.cpp
04c155365d5f642e73dcd8dbe7952e31 *src/nb-na.cpp
86ddd6a80062ec7995e37fb24fd25e61 *src/pedUtils.cpp
52ed4a43d48ed4e0e7464ff28ed04bd6 *src/prodMat.cpp
cbe22d5f576c1c5b3bb19830d2d43ee9 *src/total-var.cpp
6f93ee6f993692b655d21be7905e13ce *src/vcfUtils.cpp
69884dd90df384463115ecb2c29b34f8 *src/writebed.cpp
