# FAPROTAX: Functional Annotation of Prokaryotic Taxa
# Version: 1.2.1
# Copyright (c) 2019, Stilianos Louca
#
#
#
# LICENSE AGREEMENT
# - - - - - - - - -
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#    * Redistributions must retain the above copyright notice, this list of 
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#
# 
# Instructions for editing this database
# - - - - - - - - - - - - - - - - - - - - -
# Specify functional groups based on taxon names.
# Each group begins with a group name, followed by a list of taxons affiliated with that group ('member taxons', one member per line).
# Groups are separated by at least one blank or pure-whitespace line.
# Member taxons can be enclosed in quotes.
# Comments are prefixed with # and will be ignored. Use comments to provide literature references for functional affiliations.
#
# Each member is specified as a list of descending taxonomic levels (typically 2 or 3), separated by an asterisk (*).
#    For example "*Escherichia*Coli*" or "*Proteobacteria*Nitrosomonas*" or "*Bacteria*Nitrosomonas*europaea*".
#    The prefixed and suffixed asterisks indicate that there may be higher or lower taxonomic levels that haven't been included in the member name.
#    Be as general as possible, but as specific as needed to ensure the validity of the functional affiliations.
#    For example, if all Nitrosomonas but not all Proteobacteria oxidize ammonia, then add *Proteobacteria*Nitrosomonas* instead of *Proteobacteria*, and instead of just *Proteobacteria*Nitrosomonas*europaea*.
#
# Taxon names are case-insensitive.
# Overlaps between groups are allowed.
# Duplicate entries within a group are allowed (and will be ignored).
# Prefixed or trailing whitespace is ignored, unless enclosed in quotes.
# Group names should not contain whitespace characters (e.g. tabs).
#
# Set operations between functional groups are also supported:
#    Adding previously defined groups to a new group (e.g. for group nesting) is done using the prefix 'add_group:'
#        For example, the group 'mammal_pathogens' may include 'add_group:human_pathogens' and 'add_group:cattle_pathogens'
#    Similarly, to subtract previously defined groups from a new group (set difference), use the prefix 'subtract_group:'
#    To form the intersection of a group with a previously defined group, use the prefix 'intersect_group:'
#        For example, the group 'hydrogenotrophic_methanogens' may be defined by the two operations 'add_group:hydrogenotrophy' and 'intersect_group:methanogens'.
#    The order of set operations matters, because a set operation applies to group definitions until the point of the set operation.
#        For example, the group 'obligate_aerobic' may include 'add_group:aerobic' and then 'subtract_group:anaerobic'.
#        Similarly, the group 'obligate_aerobic_and_others' may start with 'add_group:aerobic', then 'subtract_group:anaerobic', and then list additional members not affected by the set operations.
#
# Group names may be appended by an optional semicolon-separated list of metadata entries, which is separated by the group name by whitespace
#	These metadata may be included in the generated function tables, but they do not unfluence which OTU/taxon is assigned to which function.
# 	Each metadata entry should be of the format <key>:<value>, where <value> is a comma-separated list of values (whitespace is ignored)
#	For example, methanogenesis may be appended by "carbon:yes; anaerobic:yes; elements:C,H"



methanotrophy	elements:C,H; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Archaea*ANME-2D*									# DOI:10.1038/nature12375
*Methanoperedens*nitroreducens*						# DOI:10.1038/nature12375
*Methylococcaceae*									# DOI:10.1007/0-387-30745-1_15
*Methylocystaceae*									# DOI:10.1007/0-387-30745-1_15
*Methylocystis*										# DOI:10.1099/ijs.0.64541-0  and  Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Methylocella*										# DOI:10.1038/ismej.2010.190  and  Schmidt (2012) - Topics in Ecological and Environmental Microbiology, ISBN: 9780123838797
*Methylomirabilis*									# DOI:10.1128/JB.05816-11
*Methylocapsa*										# DOI:10.1099/00207713-52-1-251  and  DOI:10.1007/s00203-001-0362-6  and  DOI:10.1099/ijs.0.020149-0  and Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Methylomonas*										# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Methylovarius*										# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Methylosineae*										# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Methylococcus*										# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Methylomicrobium*									# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Methylocaldum*										# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Methylothermus*thermalis*							# Anitori (2012) - Extremophiles: Microbiology and Biotechnology, ISBN: 9781904455981
*Methylogaea*										# DOI:10.1111/1462-2920.12149
*Methylomarinum*vadi*								# DOI:10.1099/ijs.0.040568-0
*Methylomarinum*									# DOI:10.1099/ijs.0.040568-0
*Methylacidiphilum*fumariolicum*					# DOI:10.1099/mic.0.036061-0
*Methylovulum*										# DOI:10.1099/mic.0.036061-0
*Methylosphaera*									# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, ISBN: 9780123838797
*Methylosarcina*									# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, ISBN: 9780123838797
*Methylothermus*									# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Methylohalobius* 									# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Methylosoma*										# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Acidimethylosilex*									# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Crenothrix*										# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Clonothrix*										# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Methylokorus*										# Schmidt (2012) - Topics in Ecological and Environmental Microbiology, part II, Metabolism and Behavior of Diverse Microbes, ISBN: 9780123838797
*Methylacidiphilum*									# Anitori (2012) - Extremophiles: Microbiology and Biotechnology, ISBN: 9781904455981
*Methylothermus*thermalis*							# Anitori (2012) - Extremophiles: Microbiology and Biotechnology, ISBN: 9781904455981
*Methylomarinovum*caldicuralii*						# DOI:10.1099/ijs.0.058172-0
*Methylothermaceae*									# DOI:10.1099/ijs.0.058172-0
*Methylacidiphilum*infernorum*						# DOI:10.1186/1745-6150-3-26
*Methylokorus*infernorum*							# DOI:10.1038/nature06411
*Acidimethylosilex*fumarolicum*						# DOI:10.1038/nature06222
*Methyloacida*kamchatkensis*						# DOI:10.1073/pnas.0704162105 
*Methylomirabilis*oxyfera*							# DOI:10.1128/AEM.02099-12
*Methanoperedens*nitroreducens*						# DOI:10.1038/nature12375
*Methylocystis*parvus*								# DOI:10.1111/j.1758-2229.2009.00069.x
*Methylosinus*trichosporium*						# DOI:10.1128/JB.01144-10
*Methylocapsa*aurea*								# DOI:10.1099/ijs.0.020149-0
*Methylocapsa*acidophila*							# DOI:10.1007/s00203-001-0362-6
*Methylocapsa*acidiphila*							# DOI:10.1099/00207713-52-1-251
*Methyloferula*stellata*							# DOI:10.1099/ijs.0.028118-0
*Methyloferula*										# DOI:10.1099/ijs.0.028118-0  and  DOI:10.1111/1462-2920.12149
*Methylomonas*Methanica*							# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylomonas*albus*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylococcus*mobilis*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylococcus*capsulatus*							# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylobacter*										# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Methylosphaera*hansonii*							# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Methylosinus*										# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Methylomonas*										# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Bacillus*methanicus*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methanomonas*methanicus*							# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Pseudomonas*methanica*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methyloglobulus*morosus*							# DOI:10.1016/j.syapm.2014.02.001
*Gammaproteobacteria*Methylococcales*				# DOI:10.1007/0-387-28022-7_7  and  DOI:10.1371/journal.pone.0072627





acetoclastic_methanogenesis		elements:C,H; main_element:C; electron_donor:none; electron_acceptor:none; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Methanosarcina*barkeri*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanosarcina*acetivorans*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanosarcina*thermophila*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanosarcina*vacuolata*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanosarcinales*Methanosaetaceae*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1;  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 12, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12



methanogenesis_by_disproportionation_of_methyl_groups		elements:C,H; main_element:C; electron_donor:none; electron_acceptor:none; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Methanosarcinales*Methanosarcinaceae*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1;  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 12, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12



methanogenesis_using_formate		elements:C; main_element:C; electron_donor:C; electron_acceptor:C; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# formate is split internally into CO2 and H2, from which methaner is subsequently formed [DOI:10.1038/nrmicro1931]
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Methanococcales*Methanococcus*						# Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 13, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanococcales*Methanothermococcus*				# Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 13, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanospirillaceae*Methanospirillum*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanocorpusculaceae*Methanocalculus*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanospirillaceae*Methanocalculus*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Silva 128 legacy.
*Methanolinea*tarda*								# DOI:10.1099/ijs.0.65394-0
*Methanolinea*mesophila*							# DOI:10.1099/ijs.0.035048-0
*Methanobacterium*movilense*						# DOI:10.1099/ijs.0.057224-0
*Methanobacterium*aggregans*						# DOI:10.1099/ijs.0.000210
*Methanococcaceae*Methanococcus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanomicrobium*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanoculleus*bourgensis							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanoculleus*marisnigri							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanoculleus*oldenburgensis						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanoculleus*palmolei							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanoculleus*thermophilicus						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanofollis*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanoplanus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea




methanogenesis_by_CO2_reduction_with_H2		elements:C,H; main_element:C; electron_donor:H; electron_acceptor:C; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Methanosarcina*barkeri
*Methanosarcina*acetivorans
*Methanosarcina*vacuolata
*Methanomicrobiales*								# Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 10, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanobacteriaceae*Methanobacterium*				# Garcia (1990) - Taxonomy and ecology of methanogens  and  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 11, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanobacteriaceae*Methanobrevibacter*			# Garcia (1990) - Taxonomy and ecology of methanogens  and  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 11, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanobacteriales*Methanothermobacter*			# Garcia (1990) - Taxonomy and ecology of methanogens  and  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 11, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanobacteriaceae*Methanothermobacter*			# Garcia (1990) - Taxonomy and ecology of methanogens  and  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 11, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12 . SILVA 128 legacy.
*Methanothermaceae*Methanothermus*					# Garcia (1990) - Taxonomy and ecology of methanogens  and  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 11, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanococcales*									# Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 13, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanopyrales*									# DOI:10.1093/gbe/evt128  and  DOI:10.1196/annals.1419.019
*Methanospirillaceae*Methanospirillum*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanocorpusculaceae*Methanocalculus*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanospirillaceae*Methanocalculus*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. SILVA 128 legacy.
*Methanoregula*boonei*								# DOI:10.1099/ijs.0.021782-0
*Methanolinea*tarda*								# DOI:10.1099/ijs.0.65394-0
*Methanobacterium*kanagiense*						# DOI:10.1099/ijs.0.026013-0
*Methanobacterium*veterum*							# DOI:10.1099/ijs.0.011205-0
*Methanobacterium*petrolearium*						# DOI:10.1099/ijs.0.022723-0
*Methanobacterium*ferruginis*						# DOI:10.1099/ijs.0.022723-0
*Methanobacterium*lacus*							# DOI:10.1099/ijs.0.034538-0
*Methanolinea*mesophila*							# DOI:10.1099/ijs.0.035048-0
*Methanothermobacter*tenebrarum*					# DOI:10.1099/ijs.0.041681-0
*Methanobacterium*movilense*						# DOI:10.1099/ijs.0.057224-0
*Methanobacterium*aggregans*						# DOI:10.1099/ijs.0.000210
*Methanobacterium*AL-21*							# DOI:10.1099/ijs.0.059964-0
*Methanobacterium*SWAN1T*							# DOI:10.1099/ijs.0.059964-0
*Methanococcales*Methanococcaceae*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanococcales*Methanocaldococcaceae*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanoculleus*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanofollis*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanolacinia*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanomicrobiaceae*Methanoplanus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanocorpusculaceae*Methanocorpusculum*			# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanosarcinaceae*Methanosarcina*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanopyrales*Methanopyraceae*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea




methanogenesis_by_reduction_of_methyl_compounds_with_H2		elements:C,H; main_element:C; electron_donor:H; electron_acceptor:C; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# Typical case, H2 + methanol(CH3OH) -> CH4 + H2O
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Methanomicrococcus*blatticola*						# DOI:10.1093/gbe/evt128
*Methanosphaera*stadtmanae*							# DOI:10.1093/gbe/evt128  and  DOI:10.1128/JB.188.2.642-658.2006
*Methanomassiliicoccus*luminyensis*					# DOI:10.1093/gbe/evt128
*Euryarchaeota*Methanosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanobacterium*veterum*							# DOI:10.1099/ijs.0.011205-0
*Methanobacterium*lacus*							# DOI:10.1099/ijs.0.034538-0
*Methanomassiliicoccus*luminyensis*					# DOI:10.1099/ijs.0.033712-0
*Methanogranum*caenicola*							# DOI:10.1264/jsme2.ME12189
*Methanoplasma*termitum*							# DOI:10.1128/AEM.03389-14
*Thermoplasmata*Methanomassiliicoccales*			# DOI:10.1093/gbe/evt128  and  DOI:10.1186/1471-2164-15-679
*Methanomassiliicoccaceae*Methanomassiliicoccus*	# DOI:10.1093/gbe/evt128  and  DOI:10.1186/1471-2164-15-679



hydrogenotrophic_methanogenesis		elements:C,H; main_element:C; electron_donor:H; electron_acceptor:C; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:methanogenesis_by_CO2_reduction_with_H2
add_group:methanogenesis_by_reduction_of_methyl_compounds_with_H2
*Methanobacteriales*								# Garcia (1990) - Taxonomy and ecology of methanogens  and  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 11, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Archaea*Methanomassiliicoccales*					# DOI:10.1093/gbe/evt128  and  DOI:10.1128/AEM.03389-14
*Methanoregula*formicica*							# DOI:10.1099/ijs.0.014811-0
*Methanobacteriales*Methanobacteriaceae*			# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Methanococcaceae*Methanothermococcus*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea




methanogenesis	elements:C,H; main_element:C; electron_donor:variable; electron_acceptor:variable; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:hydrogenotrophic_methanogenesis
add_group:methanogenesis_by_disproportionation_of_methyl_groups
add_group:acetoclastic_methanogenesis
add_group:methanogenesis_using_formate
add_group:methanogenesis_by_CO2_reduction_with_H2
add_group:methanogenesis_by_reduction_of_methyl_compounds_with_H2
*Methanosarcinales*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1;  Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 12, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanococcales*									# Dworkin and Falkow (2006) - The Prokaryotes: Vol. 3: Archaea. Bacteria: Firmicutes, Actinomycetes, chapter 13, ISBN: 9780387254937, DOI:10.1007/0-387-30743-5_12
*Methanopyrales*									# DOI:10.1093/gbe/evt128  and  DOI:10.1196/annals.1419.019
*Methanocellales*									# DOI:10.1093/gbe/evt128
*Thermoplasmata*Methanoplasmatales*					# DOI:10.1093/gbe/evt128  and  DOI:10.1128/AEM.03389-14
*Methanoarchaeota*									# synomym for methanogenic archaea
*Methanococcoides*methylutens*						# Sowers et al (1983) - Isolation and Characterization of a Methylotrophic Marine Methanogen, Methanococcoides methylutens gen. nov., sp. nov
*Methanomassiliicoccus*intestinalis*				# DOI:10.1128/genomeA.00453-13
*Methanomethylophilus*alvus*						# DOI:10.1093/gbe/evt128  and  DOI:10.1128/JB.01867-12
*Euryarchaeota*Methanococci*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea



methanol_oxidation	elements:C,H; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Paracoccus*denitrificans*							# DOI:10.1007/0-387-30745-1_12
*Paracoccus*alcaliphilus*							# DOI:10.1007/0-387-30745-1_12
*Paracoccus*alkenifer*								# DOI:10.1007/0-387-30745-1_12
*Paracoccus*versutus*								# DOI:10.1007/0-387-30745-1_12
*Paracoccus*methylutens*							# DOI:10.1007/0-387-30745-1_12
*Paracoccus*kondratievae*							# DOI:10.1007/0-387-30745-1_12
*Alkalibaculum*bacchi*								# DOI:10.1099/ijs.0.018507-0
*Sporomusa*sphaeroides*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*acidovorans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*aerivorans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*malonica*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*ovata*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*paucivorans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*silvacetica*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*termitida*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*aggregans*								# DOI:10.1006/anae.1998.0179
*Methylohalomonas*lacus*							# DOI:10.1099/ijs.0.64955-0
*Methylonatrum*kenyense*							# DOI:10.1099/ijs.0.64955-0
*Bacillus*methylotrophicus*							# DOI:10.1099/ijs.0.015487-0
*Blastobacter*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Microvirgula*aerodenitrificans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy.
*Acidicaldus*organivorus*							# DOI:10.1007/s00203-006-0087-7
*Bauldia*consociata*								# DOI:10.1099/ijs.0.018234-0
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Methylophilaceae*									# DOI:10.1128/JB.00404-11
*Methylophilus*										# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Methylobacillus*									# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Gammaproteobacteria*Methylophaga*					# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Piscirickettsiaceae*Methylophaga*					# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418 . SILVA 128 legacy
*Rhizobiales*Methylobacterium*						# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418
*Methylobacteriaceae*Methylobacterium*				# Goldberg and Rokem (2013) - Biology of Methylotrophs, ISBN: 9781483100418 . SILVA 128 legacy
*Pseudomonas*W6*									# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylomonas*M15*									# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Pseudomonas*C*										# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Pseudomonas*Oleovorans*							# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylomonas*EP-1*									# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylomonas*Clara*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Bacillus*C1*										# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Acetobacter*methanolicus*							# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Brevibacterium*fuscum*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Mycobacterium*vaccae*								# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Arthrobacter*globiformis*							# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Arthrobacter*P1*									# Murrell and Dalton (2013) - Methane and Methanol Utilizers, ISBN: 9781489923387
*Methylosphaera*hansonii*							# Falkow (2006) - The Prokaryotes: A Handbook on the Biology of Bacteria, Volume 5, chapter 3.1.14, ISBN: 9780387254951
*Moorella*thermoautotrophica*						# Anitori (2012) - Extremophiles: Microbiology and Biotechnology, ISBN: 9781904455981
*Verrucomicrobia*MDR*								# Anitori (2012) - Extremophiles: Microbiology and Biotechnology, ISBN: 9781904455981
*Eubacterium*limosum*								# Rode et al. (1981) - Syntrophic Association by Cocultures of the Methanol- and CO(2)-H(2)-Utilizing Species Eubacterium limosum and Pectin-Fermenting Lachnospira multiparus During Growth in a Pectin Medium
*Rhodobacteraceae*Paracoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*methanolicus*								# Arfman et al. (1992) - Bacillus methanolicus sp. nov., a new species of thermotolerant, methanol-utilizing, endospore-forming bacteria
*Gammaproteobacteria*Methylophaga*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Methylophaga*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2 . SILVA 128 legacy
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Blastobacter*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Paracoccus*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*alcaliphilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*alkenifer*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*methylutens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*methanolicus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Starkeya*novella*									# DOI:10.3389/fmicb.2013.00304
*Methanococcoides*methylutens*						# Sowers et al (1983) - Isolation and Characterization of a Methylotrophic Marine Methanogen, Methanococcoides methylutens gen. nov., sp. nov
*Methanobacterium*lacus*							# DOI:10.1099/ijs.0.034538-0
*Methyloglobulus*morosus*							# DOI:10.1016/j.syapm.2014.02.001
*Methylovirgula*ligni*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Marinobacterium*georgiense*						# DOI:10.1099/00207713-47-2-369
*Desulfotomaculum*reducens*							# DOI:10.1111/j.1462-2920.2010.02242.x
*Methyloterrigena*soli*								# DOI:10.1099/ijsem.0.000680
*Paracoccus*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*alcaliphilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*alkenifer*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*methylutens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Methylibium*petroleiphilum*						# DOI:10.1146/annurev.micro.091208.073600


methylotrophy	elements:C,H; main_element:C; electron_donor:variable; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:methanol_oxidation
add_group:methanotrophy
*Rhodobacteraceae*Marinosulfonomonas*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Methylarcula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Leisingera*methylohalidivorans*					# DOI:10.1099/00207713-52-3-851
*Beijerinckiaceae*Methylocapsa*						# DOI:10.1099/ijs.0.020149-0
*Methylobacterium*extorquens*						# DOI:10.1146/annurev.micro.091208.073600
*Paracoccus*denitrificans*							# DOI:10.1146/annurev.micro.091208.073600
*Methanomethylophilus*alvus*						# DOI:10.1093/gbe/evt128  and  DOI:10.1128/JB.01867-12
*Methanomassiliicoccales*							# DOI:10.1093/gbe/evt128
*Thermoplasmata*Methanomassiliicoccus*				# DOI:10.1093/gbe/evt128
*Thermoplasmata*Methanomassiliicoccales*			# DOI:10.1093/gbe/evt128  and  DOI:10.1186/1471-2164-15-679
*Thermoplasmata*Methanoplasmatales*					# DOI:10.1093/gbe/evt128



aerobic_ammonia_oxidation	elements:N,O; main_element:N; electron_donor:N; electron_acceptor:O; aerobic:yes; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Thiomonas*arsenivorans*							# DOI:10.1007/s10482-005-9013-2
*Thiobacillus*S-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Betaproteobacteriales*Nitrosomonadaceae*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosomonadales*Nitrosomonadaceae*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy
*Nitrosococcaceae*Nitrosococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Nitrosococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy
### *Archaea*Thaumarchaeota*						# DOI:10.1128/AEM.01960-12  and  DOI:10.1146/annurev-micro-092611-150128
*Nitrosoarchaeum*limnia*							# DOI:10.1128/AEM.01960-12
*Nitrosoarchaeum*koreensis*							# DOI:10.1128/AEM.01960-12  and  DOI:10.1128/AEM.05787-11
*Cenarchaeum*symbiosum*								# DOI:10.1128/AEM.01960-12
*Nitrososphaera*gargensis*							# DOI:10.1073/pnas.1013488108  and  DOI:10.1016/j.tim.2010.06.003
*Nitrosocaldus*yellowstonii*						# DOI:10.1111/j.1462-2920.2007.01506.x
*Nitrososphaera*viennensis*							# DOI:10.1073/pnas.1013488108
*Nitrososphaera*evergladensis*						# DOI:10.1371/journal.pone.0101648
*Nitrosopumilus*sediminis*							# DOI:10.1128/JB.01869-12
*Nitrosopumilus*salaria*							# DOI:10.1128/JB.00013-12
*Nitrosopumilus*maritimus*							# DOI:10.1128/AEM.01960-12  and  DOI:10.1038/nature03911
*Nitrosopumilus*salaria*							# DOI:10.1128/AEM.01960-12
*Nitrosopumilus*koreensis*							# DOI:10.1128/JB.01857-12
*Nitrosotalea*devanaterra*							# DOI:10.1073/pnas.1107196108
*Thaumarchaeota*Nitrososphaera*						# DOI:10.1111/j.1462-2920.2011.02666.x
*Thaumarchaeota*Nitrosotalea*						# DOI:10.1073/pnas.1107196108  and  DOI:10.1111/j.1462-2920.2011.02666.x  and  DOI:10.1111/1462-2920.13971 
*Nitrosocaldaceae*Nitrosocaldus*					# DOI:10.1146/annurev-micro-092611-150128
*Pseudonocardia*ammonioxydans						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cenarchaeum*symbiosum*								# DOI:10.1371/journal.pone.0132994
*Nitrosopelagicus*brevis*							# DOI:10.1073/pnas.1416223112
*Thaumarchaeota*Nitrosopelagicus*					# DOI:10.1073/pnas.1416223112  and  DOI:10.1038/sdata.2016.50  (mainly genomic information)
*Nitrosopumilaceae*Nitrosopumilus*					# DOI:10.1111/j.1462-2920.2011.02666.x
*Caldiarchaeum*subterraneum*						# DOI:10.1146/annurev-micro-092611-150128
*Thiosphaera*pantotropha*							# Robertson et al. (1988). Simultaneous Nitrification and Denitrification in Aerobic Chemostat Cultures of Thiosphaera pantotropha
*Nitrososphaera*viennensis*							# DOI:10.1073/pnas.1013488108
*Nitrosoarchaeum*limnia*							# DOI:10.1128/JB.00007-12
*Nitrosotenuis*uzonensis*							# DOI:10.1371/journal.pone.0080835
*Nitrososphaera*evergladensis*						# DOI:10.1371/journal.pone.0101648
*Nitrospira*nitrosa*								# DOI:10.1038/nature16459  (comammox)
*Nitrospira*nitrificans*							# DOI:10.1038/nature16459  (comammox)
*Nitrospira*inopinata*								# DOI:10.1038/nature16461  (comammox)
### *Thaumarchaeota*Marine Group I*					# DOI:10.1371/journal.pone.0095380
*Nitrososphaerales*Nitrososphaeraceae*				# DOI: 10.1099/ijs.0.063172-0



aerobic_nitrite_oxidation	elements:N,O; main_element:N; electron_donor:N; electron_acceptor:O; aerobic:yes; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Rhizobiales*Nitrobacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Nitrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy.
*Nitrospinaceae*Nitrospina*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria (Nitrospina were historically thought to belong to the Deltaproteobacteria)
*Gammaproteobacteria*Nitrococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrospirae*Nitrospira*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Nitrospira*nitrosa*								# DOI:10.1038/nature16459
*Nitrospira*nitrificans*							# DOI:10.1038/nature16459
*Nitrolancea*hollandica*							# DOI:10.1099/ijs.0.062232-0
*Nitrotoga*HW29*									# DOI:10.1128/AEM.03163-15
*Nitrotoga*arctica*									# DOI:10.1038/ismej.2007.34
*Gallionellaceae*Nitrotoga*							# DOI:10.1038/ismej.2014.158
*Burkholderia*insulsa*								# DOI:10.1099/ijs.0.064477-0




nitrification		elements:N,O; main_element:N; electron_donor:N; electron_acceptor:O; aerobic:yes; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:aerobic_ammonia_oxidation
add_group:aerobic_nitrite_oxidation




sulfate_respiration	elements:S; main_element:S; electron_donor:variable; electron_acceptor:S; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfobacteraceae*Desulfobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Table BXII.delta.14
*Desulfotomaculum*aquiferis*						# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*profundi*							# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*ferrireducens*					# DOI:10.1099/ijsem.0.001139
*Thermodesulfatator*autotrophicus*					# DOI:10.1099/ijsem.0.001297
*Thermodesulfobium*acidiphilum*						# DOI:10.1099/ijsem.0.001745
*Desulfotomaculum*reducens*							# DOI:10.1099/ijsem.0.000786
*Desulfobulbus*aggregans*							# DOI:10.1007/s00284-017-1211-4
*Archaeoglobus*lithotrophicus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Archaeoglobus*profundus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Archaeoglobus*fulgidus*							# DOI:10.1371/journal.pone.0132994  and  Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfovibrionaceae*Desulfobaculum*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrionaceae*Desulfocurvus*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Deltaproteobacteria*Desulfobacteraceae*			# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfonatronum*buryatense*						# DOI:10.1007/s00792-013-0567-z
*Dechloromonas*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Ammonifex*degensii*								# DOI:10.1016/S0723-2020(96)80007-5
*Desulfovibrio*gigas*								# Barton (1983) - Energy coupling to nitrite respiration in the sulfate-reducing bacterium Desulfovibrio gigas
*Desulfotomaculum*varum*							# DOI:10.1007/s13205-011-0017-5
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Desulfotomaculum*salinum*							# DOI:10.1007/s11021-005-0104-x
*Desulfomicrobium*Ben-RB*							# DOI:10.1007/s002030050007
*Desulfovibrio*Ben-RA*								# DOI:10.1007/s002030050007
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Desulfovibrio*alaskensis*							# DOI:10.1128/AEM.02963-13
*Desulfoconvexum*algidum*							# DOI:10.1099/ijs.0.043703-0
*Desulfovibrio*butyratiphilus*						# DOI:10.1099/ijs.0.013771-0
*Desulfotomaculum*defluvii*							# DOI:10.1099/ijs.0.047662-0
*Desulfovibrio*arcticus*							# DOI:10.1099/ijs.0.021451-0
*Desulfotomaculum*tongense*							# DOI:10.1007/s10482-013-0040-0
*Desulfosporosinus*burensis*						# DOI:10.1099/ijs.0.035238-0
*Desulfatitalea*tepidiphila*						# DOI:10.1099/ijs.0.043356-0
*Desulfopila*inferna*								# DOI:10.1099/ijs.0.015644-0
*Desulfohalophilus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0468-6
*Desulfovibrio*cavernae*							# DOI:10.1078/0723202041748181
*Desulfovibrio*oceani*								# DOI:10.1007/s10482-009-9403-y
*Desulfobacter*latus*								# DOI:10.1016/j.gca.2011.03.034
*Desulfosalsimonas*propionicica*					# DOI:10.1099/ijs.0.014746-0
*Thermodesulfobacterium*geofontis*					# DOI:10.1007/s00792-013-0512-1
*Desulfosporosinus*OT*								# DOI:10.1128/JB.06018-11
*Thermodesulfatator*atlanticus*						# DOI:10.1099/ijs.0.009449-0
*Desulfovibrio*piezophilus*							# DOI:10.1099/ijs.0.028670-0
*Desulfosporosinus*acidiphilus*						# DOI:10.1007/s00792-010-0309-4
*Desulfonatronum*thiosulfatophilum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronum*thioautotrophicum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*thiodismutans*				# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*magnus*						# DOI:10.1007/s00792-011-0370-7
*Desulfotomaculum*reducens*							# DOI:10.1111/j.1462-2920.2010.02242.x
*Desulfonatronovibrio*halophilus*					# DOI:10.1007/s00792-012-0440-5
*Thermodesulfatator*indicus*						# DOI:10.1099/ijs.0.02669-0
*Desulfonauticus*autotrophicus*						# DOI:10.1007/s00792-008-0212-4
*Desulfotomaculum*intricatum*						# DOI:10.1099/ijs.0.051854-0
*Desulfonatronum*alkalitolerans*					# DOI:10.1007/s00792-013-0538-4
*Desulfosoma*profundi*								# DOI:10.1007/s10482-011-9675-x
*Desulfosoma*caldarium*								# DOI:10.1099/ijs.0.020586-0
*Desulfobulbaceae*Desulfotalea*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacterales*Desulfobacteraceae*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacterales*Desulfobulbaceae*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Deltaproteobacteria*Desulfarculales*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrionales*Desulfonatronaceae*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrionales*Desulfovibrio*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Peptococcaceae*Desulfotomaculum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Desulfosporosinus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfosporomusa*polytropa*						# DOI:10.1007/s00203-004-0703-3
*Nitrospirae*Thermodesulfovibrio*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Bacteria*Thermodesulfobacteria*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermodesulfobiaceae*Thermodesulfobium*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldivirga*maquilingensis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrionaceae*Desulfovibrio*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2;  Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfomicrobiaceae*Desulfomicrobium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrionaceae*Desulfomicrobium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy
*Thermodesulforhabdus*norvegicus*					# Beeder et al. (1995). Thermodesulforhabdus norvegicus gen. nov., sp. nov., a novel thermophilic sulfate-reducing bacterium from oil field water
*Syntrophobacteraceae*Thermodesulforhabdus*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfarculales*Desulfarculaceae*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfomicrobiaceae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrionales*Desulfohalobiaceae*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfohalobiaceae*Desulfonatronovibrio*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfonatronumaceae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobulbaceae*Desulfobulbus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobulbaceae*Desulfofustis*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfarculaceae*Desulfarculus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacteraceae*Syntrophobacter*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacterales*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacteraceae*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy
*Syntrophobacteraceae*Desulfovirga*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacteraceae*Thermodesulforhabdus*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophaceae*Desulfomonile*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophaceae*Desulfobacca*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermodesulfobacteria*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermodesulforhabdus*norvegicus*					# DOI:10.5772/55920
*Desulfacinum*infernum*								# DOI:10.5772/55920
*Desulfomicrobium*norvegicum*						# DOI:10.5772/55920
*Dethiosulfovibrio*peptidovorans*					# DOI:10.5772/55920
*Desulfotomaculum*thermocisternum*					# DOI:10.5772/55920
*Syntrophobacter*Desulfacinum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacteraceae*Desulforhabdus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Archaeoglobaceae*Archaeoglobus*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfomonile*tiedjei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfosporosinus*meridiei*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Ammonifex*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermacetogenium*phaeum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermodesulfobiaceae*Thermodesulfobium*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfomicrobiaceae*Desulfomicrobium*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Caldivirga*maquilingensis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Clostridium*aminophilum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Deltaproteobacterium*N47*							# DOI:10.1007/s00203-010-0667-4
*Desulfobacula*toluolica*							# Rabus et al (1993). Complete oxidation of toluene under strictly anoxic conditions by a new sulfate-reducing bacterium
*Desulfococcus*multivorans*							# DOI:10.1196/annals.1419.010
*Desulfosporosinus*youngiae*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*lacus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*hippei*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*acidiphilus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfobulbus*oligotrophicus*						# DOI:10.1099/ijsem.0.001615





sulfur_respiration	elements:S; main_element:S; electron_donor:variable; electron_acceptor:S; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory reduction of elementar sulfur
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfurella*amilsii*								# DOI:10.1099/ijsem.0.000866
*Desulfotomaculum*reducens*							# DOI:10.1099/ijsem.0.000786
*Thermoplasmataceae*Thermoplasma*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Thermococcaceae*Thermococcus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Thermoplasmataceae*Thermoplasma*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Pyrodictiaceae*Pyrodictium*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Ignicoccaceae*Ignicoccus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Ignicoccus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. SILVA 128 legacy
*Desulfurococcaceae*Desulfurococcus*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcales*Thermodiscus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Thermodiscus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. SILVA 128 legacy
*Desulfurococcales*Stetteria*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Stetteria*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. SILVA 128 legacy
*Geobacteraceae*Geoalkalibacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Geoalkalibacter*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria. SILVA 128 legacy
*Desulfuromonadaceae*Desulfuromonas*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfurellales*Desulfurellaceae*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Deltaproteobacteria*Desulfurellaceae*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria. SILVA 128 legacy
*Geopsychrobacter*electrodiphilus*					# DOI:10.1128/AEM.70.10.6023-6030.2004
*Desulfonatronum*buryatense*						# DOI:10.1007/s00792-013-0567-z
*Ferrimonas*futtsuensis*							# DOI:10.1099/ijs.0.64399-0
*Campylobacter*sputorum*bubulus*					# 10.1111/j.1574-6976.2002.tb00616.x
*Ammonifex*degensii*								# DOI:10.1016/S0723-2020(96)80007-5
*Geobacteraceae*Dfrl*								# DOI:10.1016/S0723-2020(98)80054-4
*Geobacteraceae*Dfr2*								# DOI:10.1016/S0723-2020(98)80054-4
*Rhabdothermus*arcticus*							# DOI:10.1099/ijs.0.027839-0
*Oceanithermus*desulfurans*							# DOI: 10.1099/ijs.0.02962-0
*Deferribacter*abyssi*								# DOI: 10.1099/ijs.0.02673-0
*Desulfotomaculum*varum*							# DOI:10.1007/s13205-011-0017-5
*Desulfotomaculum*salinum*							# DOI:10.1007/s11021-005-0104-x
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Desulfurispira*natronophila*						# DOI:10.1007/s00792-010-0314-7
*Halarsenatibacter*silvermanii*						# DOI:10.1128/AEM.02614-08
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568–5580.2001
*Deferribacter*desulfuricans*						# DOI:10.1099/ijs.0.02479-0
*Sulfurospirillum*arcachonense*						# DOI:10.1099/00207713-47-4-1212
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Sulfurospirillum*barnesii*							# DOI:10.1099/00207713-49-3-1177
*Sulfurospirillum*arsenophilum*						# DOI:10.1099/00207713-49-3-1177
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Desulfoconvexum*algidum*							# DOI:10.1099/ijs.0.043703-0
*Desulfovibrio*arcticus*							# DOI:10.1099/ijs.0.021451-0
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Desulfosporosinus*burensis*						# DOI:10.1099/ijs.0.035238-0
*Carboxydothermus*pertinax*							# DOI:10.1099/ijs.0.031583-0
*Thermodesulfobacterium*geofontis*					# DOI:10.1007/s00792-013-0512-1
*Desulfitobacterium*hafniense*DCB-2*				# DOI:10.1186/1471-2180-12-21
*Desulfotomaculum*reducens*							# DOI:10.1111/j.1462-2920.2010.02242.x
*Thermovibrio*ruber*								# DOI:10.1099/00207713-52-5-1859
*Thermovibrio*guaymasensis*							# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*pacificum*						# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*crinifex*						# DOI:10.1007/s00792-003-0329-4
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341
*Sulfurihydrogenibium*azorense*						# DOI:10.1099/ijs.0.02790-0
*Desulfonauticus*autotrophicus*						# DOI:10.1007/s00792-008-0212-4
*Desulfurispirillum*alkaliphilum*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Desulfurispirillum*natronophila*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Caldimicrobium*rimae*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Phorcysia*thermohydrogeniphila*					# DOI:10.1099/ijs.0.035642-0
*Thioreductor*micantisoli*							# DOI:10.1099/ijs.0.63351-0
*Caminibacter*hydrogeniphilus*						# DOI:10.1099/00207713-52-4-1317
*Caminibacter*profundus*							# DOI:10.1099/ijs.0.02753-0
*Deferribacter*autotrophicus*						# DOI:10.1099/ijs.0.006767-0
*Geoalkalibacter*subterraneus*						# DOI:10.1099/ijs.0.001537-0
*Geoalkalibacter*ferrihydriticus*					# DOI:10.1134/S0026261706060099
*Deferrisoma*camini*								# DOI:10.1099/ijs.0.038372-0
*Thermosulfidibacter*takaii*						# DOI:10.1099/ijs.0.65349-0
*Marinitoga*okinawensis*							# DOI:10.1099/ijs.0.64640-0
*Cetia*pacifica*									# DOI:10.1099/ijs.0.000070
*Nautilia*abyssi*									# DOI:10.1099/ijs.0.005454-0
*Sulfurovum*aggregans*								# DOI:10.1099/ijs.0.065094-0
*Desulfotomaculum*intricatum*						# DOI:10.1099/ijs.0.051854-0
*Thennosipho*melanesiensis*							# DOI:10.1099/00207713-47-4-1118
*Thiofractor*thiocaminus*							# DOI:10.1007/s00203-012-0814-1
*Sulfurospirillum*alkalitolerans*					# DOI:10.1007/s00792-013-0538-4
*Defluviitoga*tunisiensis*							# DOI:10.1099/ijs.0.033720-0
*Thermovenabulum*gondwanense*						# DOI:10.1099/ijs.0.009886-0
*Defluviitoga*tunisiensis*							# DOI:10.1099/ijs.0.033720-0
*Dethiosulfovibrio*salsuginis*						# DOI:10.1099/ijs.0.010835-0
*Oceanotoga*teriensis*								# DOI:10.1099/ijs.0.018036-0
*Thioreductor*micantisoli*							# DOI:10.1099/ijs.0.63351-0
*Pelobacter*carbinolicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfuromonas*thiophila*							# Finster et al. (1997) - Desulfuromonas thiophila sp. nov., a new obligately sulfur-reducing bacterium from anoxic freshwater sediment
*Desulfuromonas*acetoxidans*						# Pfennig (1976) - Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic, sulfur-reducing, acetate-oxidizing bacterium
*Desulfurobacterium*thermolithotrophum*				# Haridon et al (1998). Desulfurobacterium thermolithotrophum gen. nov., sp. nov., a novel autotrophic, sulphur-reducing bacterium isolated from a deep-sea hydrothermal vent
*Desulfurobacteriaceae*Desulfurobacterium*			# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfuromonaceae*Desulfuromonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pyrobaculum*islandicum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrobaculum*organotrophum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrodictiaceae*Pyrodictium*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfurococcales*Stetteria*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfurococcus*mucosus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Campylobacteria*Sulfurospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Campylobacteraceae*Sulfurospirillum*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy
*Thermoproteales*Thermoproteaceae*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfuromonadaceae*Desulfuromonas*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridiales*Fusibacter*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfuromonadaceae*Desulfuromusa*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridiaceae*Alkaliphilus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfuromonales*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*oneidensis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Halanaerobium*congolense*							# DOI:10.5772/55920
*Halanaerobium*saccharolyticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoproteales*Thermoproteaceae*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrobaculum*organotrophum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Crenarchaeota*Thermocladium*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Ignicoccaceae*Ignicoccus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Crenarchaeota*Ignicoccus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. SILVA 128 legacy
*Crenarchaeota*Pyrodictiaceae*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Sulfurospirillum*deleyianum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfosporosinus*meridiei*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiales*Sporanaerobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Ammonifex*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*chlororespirans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*metallireducens*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Crenarchaeota*Thermofilaceae*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Caldivirga*maquilingensis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Ferroglobus*placidus*								# DOI:10.1371/journal.pone.0132994
*Sulfolobaceae*Acidianus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfolobaceae*Stygiolobus*							# DOI:10.1099/00207713-41-4-495  and  Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfomicrobium*norvegicum*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*aespoeensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*alcoholovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*burkinensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*carbinolicus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*cuneatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gabonensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gigas*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*litoralis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*longus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*termitidis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*zosterae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermococcaceae*Thermococcus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Nautilia*lithotrophica*							# DOI:10.1099/00207713-52-4-1299
*Nautilia*profundicola*								# DOI:10.1099/ijs.0.65435-0
*Caminibacter*hydrogeniphilus*						# DOI:10.1371/journal.pgen.1000362
*Thermovenabulum*ferriorganovorum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Methanosarcina*barkeri*							# DOI:10.1007/978-94-017-9269-1_10
*Pyrococcus*furiosus*								# DOI:10.1007/978-94-017-9269-1_10
*Pyrodictium*abyssi*								# DOI:10.1007/978-94-017-9269-1_10
*Desulfuromonas*acetoxidans*						# DOI:10.1007/978-94-017-9269-1_10
*Sulfurospirillum*deleyianum*						# DOI:10.1007/978-94-017-9269-1_10
*Wolinella*succinogenes*							# DOI:10.1007/978-94-017-9269-1_10
*Acidianus*ambivalens*								# DOI:10.1007/978-94-017-9269-1_10
*Nautilia*profundicola*								# DOI:10.1099/ijs.0.65435-0
*Lebetimonas*acidiphila*							# DOI:10.1099/ijs.0.63330-0
*Nautiliaceae*Lebetimonas*							# DOI:10.1038/ismej.2013.206			
*Caminibacter*mediatlanticus*						# DOI:10.1099/ijs.0.63430-0
*Desulfuromonadaceae*Desulfuromusa*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*argillaceus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*bremensis*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*chapellei*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*daltonii*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*hydrogenophilus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*lovleyi*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*pelophilus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*pickeringii*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*sulfurreducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*thiogenes*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Deferribacter*abyssi*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea			
*Deferribacter*autotrophicus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea			
*Deferribacter*desulfuricans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea			



dark_sulfite_oxidation	elements:S; main_element:S; electron_donor:S; electron_acceptor:variable; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# for energy
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Burkholderia*kururiensis*thiooxydans*				# DOI:10.1007/s00203-009-0517-4
*Dyella*thiooxydans*								# DOI:10.1099/ijs.0.022012-0
*Sulfitobacter*pontiacus*							# Sorokin (1995) - Sulfitobacter pontiacus gen. nov., sp. nov.―A new heterotrophic bacterium from the black sea, specialized on sulfite oxidation
*Sulfitobacter*mediterraneus*						# Pukall, Buntefuss et al (1999) - Sulfitobacter rnediterraneus sp. nov., a new sulfite-oxidizing member of the a-Proteobacteria
*Starkeya*novella*									# DOI:10.1074/jbc.M503237200
*Thermithiobacillus*tepidarius*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfitobacter*pontiacus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Sulfitobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*cuneatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*litoralis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*oxyclinae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*sulfodismutans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*taiwanensis*								# DOI:10.1007/s00253-013-4976-9





sulfite_respiration		elements:S; main_element:S; electron_donor:variable; electron_acceptor:S; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory sulfite reduction
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfotomaculum*aquiferis*						# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*profundi*							# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*ferrireducens*					# DOI:10.1099/ijsem.0.001139
*Desulfobulbus*aggregans*							# DOI:10.1007/s00284-017-1211-4
*Desulfocurvus*vexinensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobaculum*xiamenense*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfonatronaceae*Desulfonatronum*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfonatronum*buryatense*						# DOI:10.1007/s00792-013-0567-z
*Shewanella*denitrificans*							# DOI:10.1099/00207713-52-6-2211
*Campylobacter*sputorum*bubulus*					# 10.1111/j.1574-6976.2002.tb00616.x
*Desulfotomaculum*varum*							# DOI:10.1007/s13205-011-0017-5
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Desulfotomaculum*salinum*							# DOI:10.1007/s11021-005-0104-x
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568–5580.2001
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Desulfotomaculum*defluvii*							# DOI:10.1099/ijs.0.047662-0
*Desulfovibrio*arcticus*							# DOI:10.1099/ijs.0.021451-0
*Desulfotomaculum*tongense*							# DOI:10.1007/s10482-013-0040-0
*Desulfovibrio*cavernae*							# DOI:10.1078/0723202041748181
*Desulfovibrio*oceani*								# DOI:10.1007/s10482-009-9403-y
*Desulfosalsimonas*propionicica*					# DOI:10.1099/ijs.0.014746-0
*Desulfovibrio*piezophilus*							# DOI:10.1099/ijs.0.028670-0
*Desulfitobacterium*hafniense*DCB-2*				# DOI:10.1186/1471-2180-12-21
*Desulfitobacterium*hafniense*						# DOI:10.1099/00207713-46-2-442
*Desulfonatronum*thiosulfatophilum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronum*thioautotrophicum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*magnus*						# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*thiodismutans*				# DOI:10.1007/s00792-011-0370-7
*Thermus*thermophilus*								# DOI:10.1128/JB.05186-11
*Thiobacillus*thiooxidans*							# Kodama and Mori (1968) - Studies on the metabolism of a sulfur-oxidizing bacterium V. Comparative studies on sulfur and sulfite oxidizing systems of Thiobacillus thiooxidans
*Wolinella*succinogenes*							# Poole (2013) - Advances in Microbial Physiology, Volume 62, Academic Press
*Salmonella*enterica*								# DOI:10.1128/JB.06014-11
*Archaeoglobus*veneficus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Archaeoglobus*profundus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfurohaeterium*thermolithotrophum*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermodesulfobacterium*mobile*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfacinum*infernum*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermodesulforhabdus*narvegicus*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*desulfuricans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfomicrobium*baculatum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfomicrobium*apsheronum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfonatronovibrio*hydrogenovorans*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfonatronum*lacustre*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacteraceae*Desulfobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Table BXII.delta.14
*Desulfobacterium*niacini*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacteraceae*Desulfobotulus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfococcus*multivorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfococcus*biacutus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacteraceae*Desulfofaba*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfofrigus*oceanense*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfosarcina*variabilis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfospira*joergensenii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfotignum*balticum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobulbaceae*Desulfobulbus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfocapsa*thiozymogenes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfocapsa*sulfexigens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfofustis*glycolicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulforhopalus*vacuolatus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulforhopalus*singaporensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfotalea*psychrophila*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfarculus*baarsii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacter*pfennigii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacterales*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacteraceae*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. SILVA 128 legacy
*Desulfacinum*infernum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfacinum*hydrothermale*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulforhabdus*amnigena*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermodesulforhabdus*norvegica*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulforhabdus*amnigena*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovirga*adipica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermodesulforhabdus*norvegica*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacca*acetoxidans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurospirillum*deleyianum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridium*amygdalinum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*chlororespirans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*hafniense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*RPf35Ei*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfosporosinus*orientis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfosporosinus*meridiei*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*brockii*lactiethylicus*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*siderophilus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*thermohydrosulfuricus*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*wiegelii*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldanaerobacter*subterraneus subterraneus*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*aciditolerans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*thermosaccharolyticum*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfobulbus*oligotrophicus*						# DOI:10.1099/ijsem.0.001615




thiosulfate_respiration			elements:S; main_element:S; electron_donor:variable; electron_acceptor:S; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfobacteraceae*Desulfobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Table BXII.delta.14
*Desulfotomaculum*aquiferis*						# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*profundi*							# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*ferrireducens*					# DOI:10.1099/ijsem.0.001139
*Desulfurella*amilsii*								# DOI:10.1099/ijsem.0.000866
*Thermodesulfobium*acidiphilum*						# DOI:10.1099/ijsem.0.001745
*Desulfotomaculum*reducens*							# DOI:10.1099/ijsem.0.000786
*Dethiosulfatarculus*sandiegensis*					# DOI:10.1099/ijsem.0.000864
*Desulfobulbus*aggregans*							# DOI:10.1007/s00284-017-1211-4
*Archaeoglobus*lithotrophicus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Archaeoglobus*profundus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Archaeoglobaceae*Archaeoglobus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Pyrodictiaceae*Pyrolobus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurella*propionica*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfocurvus*vexinensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfonatronaceae*Desulfonatronum*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Shewanella*electrodiphila*							# DOI:10.1099/ijs.0.000345
*Desulfonatronum*buryatense*						# DOI:10.1007/s00792-013-0567-z
*Shewanella*amazonensis*							# DOI:10.1099/00207713-48-3-965
*Desulfotomaculum*varum*							# DOI:10.1007/s13205-011-0017-5
*Campylobacter*sputorum*bubulus*					# 10.1111/j.1574-6976.2002.tb00616.x
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Desulfotomaculum*salinum*							# DOI:10.1007/s11021-005-0104-x
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Pyrobaculum*ferrireducens*							# DOI:10.1099/ijs.0.000027
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Shewanella*O23S*									# DOI:10.3390/ijms160714409
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568–5580.2001
*Archaeoglobus*veneficus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Sulfurospirillum*barnesii*							# DOI:10.1099/00207713-49-3-1177
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Desulfoconvexum*algidum*							# DOI:10.1099/ijs.0.043703-0
*Desulfovibrio*butyratiphilus*						# DOI:10.1099/ijs.0.013771-0
*Desulfotomaculum*defluvii*							# DOI:10.1099/ijs.0.047662-0
*Desulfovibrio*arcticus*							# DOI:10.1099/ijs.0.021451-0
*Desulfotomaculum*tongense*							# DOI:10.1007/s10482-013-0040-0
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Desulfosporosinus*burensis*						# DOI:10.1099/ijs.0.035238-0
*Desulfatitalea*tepidiphila*						# DOI:10.1099/ijs.0.043356-0
*Carboxydothermus*pertinax*							# DOI:10.1099/ijs.0.031583-0
*Sulfurospirillum*deleyianum*						# DOI:10.1128/AEM.04220-13
*Desulfovibrio*cavernae*							# DOI:10.1078/0723202041748181
*Desulfovibrio*oceani*								# DOI:10.1007/s10482-009-9403-y
*Desulfosalsimonas*propionicica*					# DOI:10.1099/ijs.0.014746-0
*Thermodesulfobacterium*geofontis*					# DOI:10.1007/s00792-013-0512-1
*Desulfitispora*alkaliphila*						# DOI:10.1007/s00792-010-0310-y
*Salmonella*enterica*								# DOI:10.1128/JB.06014-11
*Desulfovibrio*piezophilus*							# DOI:10.1099/ijs.0.028670-0
*Desulfitobacterium*hafniense*DCB-2*				# DOI:10.1186/1471-2180-12-21
*Desulfitobacterium*hafniense*						# DOI:10.1099/00207713-46-2-442
*Desulfonatronum*thiosulfatophilum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronum*thioautotrophicum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*magnus*						# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*thiodismutans*				# DOI:10.1007/s00792-011-0370-7
*Desulfotomaculum*reducens*							# DOI:10.1111/j.1462-2920.2010.02242.x
*Desulfonatronovibrio*halophilus*					# DOI:10.1007/s00792-012-0440-5
*Thialkalivibrio*versutus*D301*						# DOI:10.1007/s10529-015-1845-x
*Desulfurobacterium*atlanticum*						# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*pacificum*						# DOI:10.1099/ijs.0.63994-0
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341
*Desulfonauticus*autotrophicus*						# DOI:10.1007/s00792-008-0212-4
*Thermolithobacter*ferrireducens*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Caldimicrobium*rimae*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Sulfurovum*aggregans*								# DOI:10.1099/ijs.0.065094-0
*Desulfotomaculum*intricatum*						# DOI:10.1099/ijs.0.051854-0
*Bacillus*stamsii*									# DOI:10.1016/j.syapm.2015.06.004
*Sulfurospirillum*alkalitolerans*					# DOI:10.1007/s00792-013-0538-4
*Desulfonatronum*alkalitolerans*					# DOI:10.1007/s00792-013-0538-4
*Desulfosoma*profundi*								# DOI:10.1007/s10482-011-9675-x
*Defluviitoga*tunisiensis*							# DOI:10.1099/ijs.0.033720-0
*Ferrimonas*balearica*								# DOI:10.4056/sigs.1161239
*Thermovenabulum*gondwanense*						# DOI:10.1099/ijs.0.009886-0
*Defluviitoga*tunisiensis*							# DOI:10.1099/ijs.0.033720-0
*Dethiosulfovibrio*salsuginis*						# DOI:10.1099/ijs.0.010835-0
*Oceanotoga*teriensis*								# DOI:10.1099/ijs.0.018036-0
*Crenarchaeota*Desulfurococcales*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Crenarchaeota*Pyrodictiaceae*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Archaeoglobaceae*Archaeoglobus*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Nitrospirae*Thermodesulfovibrio*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Alteromonadaceae*Alishewanella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Desulfomonile*tiedjei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sulfurospirillum*deleyianum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Eubacteriaceae*Garciella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Desulfitobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfosporosinus*meridiei*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carboxydothermus*ferrireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermacetogenium*phaeum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Thermanaeromonas*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermodesulfobiaceae*Thermodesulfobium*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Coprothermobacteraceae*Coprothermobacter*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermodesulfobiaceae*Coprothermobacter*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3. Legacy taxonomy.
*Caldivirga*maquilingensis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfurobacterium*thermolithotrophum*				# Haridon et al (1998). Desulfurobacterium thermolithotrophum gen. nov., sp. nov., a novel autotrophic, sulphur-reducing bacterium isolated from a deep-sea hydrothermal vent
*Desulfurobacteriaceae*Desulfurobacterium*			# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfurococcales*Stetteria*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfurospirillum*deleyianum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurospirillum*arsenophilum*						# DOI:10.1099/00207713-49-3-1177  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurospirillum*barnesii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*desulfuricans*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*acrylicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*aespoeensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*alcoholovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*aminophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*burkinensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*carbinolicus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*cuneatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gabonensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*giganteus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gigas*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*halophilus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*inopinatus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*intestinalis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*litoralis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*longreachensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*longus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*oxyclinae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*profundus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*salexigens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*senezii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*simplex*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*sulfodismutans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*termitidis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*vietnamensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*vulgaris*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*zosterae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermotogaceae*Thermotoga*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Firmicutes*Fusibacter*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermovenabulum*ferriorganovorum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkaliphilus*peptidofermentans*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*youngiae*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*lacus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*hippei*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfitobacterium*hafniense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*chlororespirans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*metallireducens*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfobulbus*oligotrophicus*						# DOI:10.1099/ijsem.0.001615





respiration_of_sulfur_compounds		elements:S; main_element:S; electron_donor:variable; electron_acceptor:S; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:sulfite_respiration
add_group:sulfur_respiration
add_group:sulfate_respiration
add_group:thiosulfate_respiration




arsenate_detoxification		elements:As; main_element:As; electron_donor:variable; electron_acceptor:As; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory reduction of arsenate for detoxification
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Sinorhizobium*M14*									# DOI:10.1080/01490450802402836
*Bacillus*SXB*										# DOI:10.1111/jam.12093
*Pantoea*IMH*										# DOI:10.1111/jam.12093
*Microbacterium*hydrocarbonoxydans*					# DOI:10.1111/j.1365-2672.2009.04188.x
*Variovorax*paradoxus*								# DOI:10.1111/j.1365-2672.2009.04188.x
*Kocuria*erythromyxa*								# DOI:10.1111/j.1365-2672.2009.04188.x
*Arsenicoccus*bolidensis*							# DOI:10.1111/j.1365-2672.2009.04188.x
*Staphylococcus*succinus*							# DOI:10.1111/j.1365-2672.2009.04188.x
*Arthrobacter*agilis*								# DOI:10.1111/j.1365-2672.2009.04188.x
*Geobacillus*kaustophilus*							# DOI:10.1099/mic.0.048678-0
*Exiguobacterium*WK6*								# DOI:10.1007/s00284-003-4205-3
*Aeromonas*CA1*										# DOI:10.1007/s00284-003-4205-3
*Desulfovibrio*Ben-RA*								# DOI:10.1007/s002030050007
*Acidiphilium*multivorum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*ANA-3*									# DOI:10.1128/JB.187.21.7390-7396.2005
*Herminiimonas*arsenicoxydans*						# DOI:10.1099/ijs.0.64308-0


arsenate_respiration		elements:As; main_element:As; electron_donor:variable; electron_acceptor:As; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory reduction of arsenate under anaerobic conditions (as electron acceptor)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Anaerobacillus*alkalidiazotrophicus*				# DOI:10.1134/S0026261709060095
*Anaerobacillus*alkalilacustre*						# DOI:10.1134/S0026261709060095
*Ferrimonas*futtsuensis*							# DOI:10.1099/ijs.0.64399-0
*Shewanella*ANA-3*									# DOI:10.1128/JB.187.21.7390-7396.2005
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Sulfurospirillum*arsenophilum*						# William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Sulfurospirillum*barnesii*							# William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Chrysiogenes*arsenatis*							# William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Desulfomaculum*auripigmentum*						# William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Bacillus*arsenicoselenatis*						# DOI:10.1007/s002030050673  and  DOI:10.1126/science.1081903  and  William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Bacillus*selenitireducens*							# DOI:10.1007/s002030050673  and  DOI:10.1126/science.1081903  and  William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Pyrobaculum*arsenaticum*							# William T. Frankenberger, Jr (2001) Environmental Chemistry of Arsenic. Series: Books in Soils, Plants, and the Environment. CRC Press
*Halarsenatibacter*silvermanii*						# DOI:10.1128/AEM.02614-08
*Sulfurospirillum*deleyianum*						# DOI:10.1126/science.1081903
*Wolinella*BSA-1*									# DOI:10.1126/science.1081903
*Clostridium*OhilAs*								# DOI:10.1126/science.1081903
*Bacillus*HT-1*										# DOI:10.1126/science.1081903
*Bacillus*JMM4*										# DOI:10.1126/science.1081903  and  DOI:10.1080/014904502317246156
*Desulfitobacterium*GBFH*							# DOI:10.1126/science.1081903
*Desulfotomaculum*auripigmentum*					# DOI:10.1126/science.1081903
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568-5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568-5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568-5580.2001
*Desulfosporosinus*Y5*								# DOI:10.1016/j.bbrc.2005.10.011
*Chrysiogenes*arsenatis*							# DOI:10.1099/00207713-46-4-1153
*Desulfomicrobium*Ben-RB*							# DOI:10.1007/s002030050007
*Anaeromyxobacter*PSR-1*							# DOI:10.1128/AEM.00693-13
*Bacillus*SF-1*										# DOI:10.1016/S1389-1723(03)70131-5  and  DOI:10.1002/bit.20646
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Pseudomonas*putida*WB*								# DOI:10.1007/s00253-010-2856-0
*Bacillus*selenatarsenatis*							# DOI:10.1099/ijs.0.64667-0
*Chrysiogenes*arsenatis*							# DOI:10.1046/j.1432-1327.1998.2550647.x
*Sulfurospirillum*arsenophilum*						# DOI:10.1099/00207713-49-3-1177  and  DOI:10.1021/es062067d  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurospirillum*barnesii*							# DOI:10.1099/00207713-49-3-1177
*Deferribacter*desulfuricans*						# DOI:10.1099/ijs.0.02479-0
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Desulfurispira*natronophila*						# DOI:10.1007/s00792-010-0314-7
*Shewanella*O23S*									# DOI:10.3390/ijms160714409
*Citrobacter*NC-1*									# DOI:10.1007/s10295-011-0996-6
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Geobacter*OR-1*									# DOI:10.1021/es400231x  and DOI:10.1128/genomeA.01478-14
*Pyrobaculum*ferrireducens*							# DOI:10.1099/ijs.0.000027
*Seleniivibrio*woodruffii*							# DOI:10.1099/ijs.0.043547-0
*Anaeromyxobacter*PSR-1*							# DOI:10.1128/genomeA.00472-15
*Anaerobacillus*macyae*								# DOI:10.1128/genomeA.00922-15
*Marinobacter*santoriniensis*						# DOI:10.1099/ijs.0.003145-0  and  DOI:10.1111/j.1462-2920.2009.01890.x
*Desulfurispirillum*indicum*						# DOI:10.1111/j.1574-6941.2012.01351.x  and  DOI:10.1099/ijs.0.022392-0
*Deferribacteres*MPA-C3*							# DOI:10.1111/1462-2920.12136
*Denitrovibrio*acetiphilus*							# DOI:10.1007/s00203-013-0915-5
*Deltaproteobacteria*MLMS-1*						# DOI:10.1128/AEM.70.5.2741-2747.2004  and  DOI:10.1021/acs.est.5b01165
*Sulfurospirillum*barnesii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfotomaculum*auripigmentum*					# DOI:10.1099/ijs.0.02526-0
*Desulfosporosinus*auripigmenti*					# DOI:10.1099/ijs.0.02526-0
*Bacillus*macyae*									# DOI:10.1099/ijs.0.63059-0
*Thermus*HR13*										# DOI:10.1111/j.1574-6968.2001.tb10907.x
*Chrysiogenes*arsenatus*							# Stolz and Oremland (1999) - Bacterial respiration of arsenic and selenium. FEMS Microbiology Reviews 23: 615-627


dissimilatory_arsenate_reduction		elements:As; main_element:As; electron_donor:variable; electron_acceptor:As; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# detoxification or respiration
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:arsenate_detoxification
add_group:arsenate_respiration



arsenite_oxidation_detoxification		elements:As; main_element:As; electron_donor:As; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Alcaligenes*faecalis*								# Philips and Taylor (1976) - Oxidation of arsenite to arsenate by Alcaligenes faecalis
*Thermus*HR13*										# DOI:10.1111/j.1574-6968.2001.tb10907.x
*Thermus*aquaticus*									# DOI:10.1021/es010816f
*Thermus*thermophilus*								# DOI:10.1021/es010816f
*Betaproteobacteria*ULPAs1*							# Weeger et al (1999) - Oxidation of arsenite to arsenate by a bacterium isolated from an aquatic environment. BioMetals 12:141-149
*Cenibacterium*arsenoxidans*						# DOI:10.1128/JB.188.3.1081-1088.2006
*Agrobacterium*tumefaciens*							# DOI:10.1128/JB.188.3.1081-1088.2006
*Alcaligenes*RS-19*									# DOI:10.1007/s10653-008-9170-0
*Achromobacter*arsenoxydans*						# Turner (1954) - Bacterial oxidation of arsenite
*Xanthomonas*arsenoxydans*							# Turner (1954) - Bacterial oxidation of arsenite
*Hydrogenobaculum*H55*								# DOI:10.1128/AEM.70.3.1865-1868.2004
*Herminiimonas*arsenicoxydans*						# DOI:10.1099/ijs.0.64308-0
*Polaromonas*GM1*									# DOI:10.1186/1471-2180-10-205  and  DOI:10.1039/C2MT20180A
*Agrobacterium*albertimagni*						# DOI:10.1080/014904502317246165
*Thiomonas*intermedia*								# DOI:10.1007/s10482-005-9013-2
*Thiomonas*WJ68*									# DOI:10.1186/1471-2180-9-127



arsenite_oxidation_energy_yielding		elements:As; main_element:As; electron_donor:As; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory oxidation of arsenite for energy, not for photosynthesis
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Pseudomonas*arsenitoxidans*						# DOI:10.1128/AEM.66.1.92-97.2000
*Sinorhizobium*M14*									# DOI:10.1080/01490450802402836
*Alphaproteobacteria*NT-26*							# DOI:10.1128/AEM.66.1.92-97.2000
*Bacillus*arsenoxydans*								# DOI:10.1128/AEM.66.1.92-97.2000
*Hydrogenophaga*NT-14*								# DOI:10.1016/j.bbabio.2004.03.001
*Gammaproteobacteria*MLHE-1*						# DOI:10.1128/AEM.68.10.4795-4802.2002
*Thiomonas*3As*										# DOI:10.1111/j.1462-2920.2007.01447.x
*Rhizobiales*DAO10*									# DOI:10.1111/j.1462-2920.2005.00977.x
*Rhodocyclales*DAO1*								# DOI:10.1111/j.1462-2920.2005.00977.x
*Ancylobacter*OL-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Thiobacillus*S-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Hydrogenophaga*CL-3*								# DOI:10.1111/j.1574-6941.2008.00569.x
*Rhizobiaceae*SDB1*									# DOI:10.1007/s12275-009-0279-3
*Acidicaldus*AO5*									# DOI:10.1128/AEM.01161-07
*Thiomonas*arsenivorans*							# DOI:10.1007/s10482-005-9013-2
*Thiomonas*NO-115*									# DOI:10.1007/s10482-005-9013-2
*Agrobacterium*BEN-5*								# DOI:10.1007/s10482-005-9013-2
*Thiomonas*arsenitoxydans*							# DOI:10.1007/s00792-013-0573-1



dissimilatory_arsenite_oxidation		elements:As; main_element:As; electron_donor:As; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:arsenite_oxidation_detoxification
add_group:arsenite_oxidation_energy_yielding
*Acidovorax*NO1*									# DOI:10.1128/JB.06814-11


anammox		elements:N; main_element:N; electron_donor:N; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Brocadiaceae*Brocadia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Brocadiaceae*Kuenenia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Brocadiaceae*Anammoxoglobus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Brocadiaceae*Jettenia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Brocadiaceae*Scalindua*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Brocadiales*Candidatus Scalindua*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Anammoximicrobium*moscowii*						# DOI:10.1134/S002626171305007X
*Jettenia*caeni*									# DOI:10.1111/1462-2920.12674
*Brocadia*caroliniensis*							# DOI:US Patent US 8574885 B2
*Kuenenia*stuttgartiensis*							# Poole (2012) - Advances in Microbial Physiology, Volume 60, Academic Prress
*Brocadia*sinica*									# Poole (2012) - Advances in Microbial Physiology, Volume 60, Academic Prress
*Brocadia*anammoxidans*								# Poole (2012) - Advances in Microbial Physiology, Volume 60, Academic Prress
*Pseudomonas*mendocina*D3*							# DOI:10.1007/s11427-006-2018-x



nitrate_denitrification			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# dissimilatory reduction of NO3 to N2
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Steroidobacter*denitrificans*						# DOI:10.1099/ijs.0.65342-0
*Denitratisoma*oestradiolicum*						# DOI:10.1099/ijs.0.63672-0
*Rubrimonas*shengliensis*							# DOI:10.1016/j.syapm.2011.03.004
*Thauera*DNT-1*										# DOI:10.1128/AEM.70.3.1385–1392.2004
*Herminiimonas*SP-B*								# DOI:10.1111/1462-2920.12110
*Arcobacter*KLS-1*									# DOI:10.1111/1462-2920.12110
*Arcobacter*SAS-1*									# DOI:10.1111/1462-2920.12110
*Arcobacter*SL-3*									# DOI:10.1111/1462-2920.12110
*Arcobacter*Y2S*									# DOI:10.1111/1462-2920.12110
*Arcobacter*YAPB-1*									# DOI:10.1111/1462-2920.12110
*Arcobacter*YAS-1*									# DOI:10.1111/1462-2920.12110
*Pseudomonas*SL-1*									# DOI:10.1111/1462-2920.12110
*Pseudomonas*SLB-2*									# DOI:10.1111/1462-2920.12110
*Pseudomonas*UL-1*									# DOI:10.1111/1462-2920.12110
*Psychromonas*SL-2*									# DOI:10.1111/1462-2920.12110
*Psychromonas*Y2B*									# DOI:10.1111/1462-2920.12110
*Bacillus*vireti*									# DOI:10.1111/1462-2920.12478
*Pseudomonas*JR12*									# Barak et al (1998) - Light-Mediated Nitrite Accumulation during Denitrification by Pseudomonas sp. Strain JR12
*Rhodocyclales*DAO1*								# DOI:10.1111/j.1462-2920.2005.00977.x
*Rhizobiales*DAO10*									# DOI:10.1111/j.1462-2920.2005.00977.x
*Sulfurimonas*gotlandica*							# DOI:10.1073/pnas.1111262109
*Sulfurimonas*hongkongensis*						# DOI:10.4056/sigs.4948668
*Persephonella*hydrogeniphila*						# DOI:10.1099/ijs.0.02505-0
*Sulfurihydrogenibium*subterraneum*					# DOI:10.1099/ijs.0.02506-0
*Zobellella*denitrificans*							# DOI:10.1099/ijs.0.64121-0
*Nisaea*denitrificans*								# DOI:10.1099/ijs.0.64592-0
*Ruegeria*atlantica*								# DOI:10.1099/ijs.0.64568-0
*Ruegeria*lacuscaerulensis*							# DOI:10.1099/ijs.0.64568-0
*Pannonibacter*phragmitetus*						# DOI:10.1099/ijs.0.02356-0
*Snuella*lapsa*										# DOI:10.1099/ijs.0.027458-0
*Rubricoccus*marinus*								# DOI:10.1099/ijs.0.026294-0
*Vogesella*indigofera*								# DOI:10.1099/00207713-47-1-19
*Pseudomonas*aeruginosa*							# DOI:10.1099/00207713-47-1-19  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Dinoroseobacter*shibae*							# DOI:10.1099/ijs.0.63511-0
*Sulfuricella*denitrificans*						# DOI:10.1099/ijs.0.016980-0
*Rhodobium*orientis*								# DOI:10.1099/00207713-45-2-226  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Thiohalomonas*denitrificans*						# DOI:10.1099/ijs.0.65112-0
*Pseudomonas*stutzeri*								# Carlson and Ingraham (1983) - Comparison of denitrification by Pseudomonas stutzeri, Pseudomonas aeruginosa, and Paracoccus denitrificans; Kester et al. (1997) - Production of NO and N2O by Pure Cultures of Nitrifying and Denitrifying Bacteria during Changes in Aeration
*Alcaligenes*eutrophus*								# Kester et al. (1997) - Production of NO and N2O by Pure Cultures of Nitrifying and Denitrifying Bacteria during Changes in Aeration
*Rhodocyclaceae*Zoogloea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Dechlorosoma*suillum*								# DOI:10.1099/00207713-51-2-527  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*anaerobius*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquaspirillaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy.
*Brachymonas*denitrificans*							# DOI:10.2323/jgam.41.99
*Thermothrix*thiopara*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Paracoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*adhaerens*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, TABLE BXII.a.58
*Hyphomonas*hirschiana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*jannaschiana*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*johnsonii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*neptunium*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*oceanitis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*rosenbergii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Iamia*majanohamensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Costertonia*aggregata*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Thiomicrospira*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Magnetospirillum*magnetotacticum*					# DOI:10.1196/annals.1419.010  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Georgfuchsia*toluolica*							# DOI:10.1111/j.1574-6941.2009.00778.x
*Azoarcus*tolulyticus*								# Zhou et al (1995). Phylogenetic analyses of a new group of denitrification capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov
*Achromobacter*xylosoxidans*						# DOI:10.1111/j.1348-0421.1998.tb02306.x
*Alcaligenes*denitrificans*							# DOI:10.1099/00207713-33-1-85
*Bradyrhizobium*japonicum*							# DOI:10.1099/00221287-135-1-189  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Blastobacter*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiobacillus*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Micrococcus*denitrificans*							# DOI:10.1099/00221287-29-2-301  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Paracoccus*denitrificans*							# DOI:10.1099/00221287-29-2-301  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Paracoccus*alkenifer*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*kocurii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*solventivorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*thicyanatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*versutus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Pseudomonas*balearica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*chlororaphis*chlororaphis*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.c.119
*Pseudomonas*fluorescens*II*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.c.119
*Pseudomonas*fluorescens*III*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.c.119
*Pseudomonas*fluorescens*IV*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.c.119
*Pseudomonas*putida*AD-21*							# DOI:10.1263/jbb.106.498
*Pseudomonas*mendocina*								# DOI:10.1007/s11427-006-2018-x  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiosphaera*pantotropha*							# Robertson et al. (1988). Simultaneous Nitrification and Denitrification in Aerobic Chemostat Cultures of Thiosphaera pantotropha
*Shewanella*denitrificans*							# DOI:10.1099/00207713-52-6-2211
*Shewanella*amazonensis*							# DOI:10.1099/00207713-48-3-965
*Thiosphaera*pantotropha*							# DOI:10.1099/00221287-129-9-2847  and  Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Aquitalea*denitrificans*							# DOI:10.1099/ijs.0.002840-0
*Marinobacter*hydrocarbonoclasticus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2  and  Gauthier et al. (1992) - Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
*Marinobacter*aquaeolei*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ferrimonas*sediminum*								# DOI:10.1099/ijs.0.042408-0
*Pseudomonas*nautica*								# DOI:10.1099/00207713-48-4-1445  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2  and  Gauthier et al. (1992) - Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
*Flavobacterium*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Dechloromonas*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Rhodobacter*azotoformans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonas*nitrativorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Brachymonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hydrogenophaga*pseudoflava*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hydrogenophaga*taeniospiralis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquaspirillum*magnetotacticum*						# Bazylinski et al. (1983) - Denitrification and assimilatory nitrate reduction in Aquaspirillum magnetotacticum
*Bradyrhizobium*japonicum*							# DOI:10.1111/j.1574-6968.1985.tb01008.x
*Azospirillum*brasilense*							# DOI:10.1071/PP01071  and  DOI:10.1007/BF00402122  and  Nelson et al. (1978) - Effect of oxygen and nitrate on nitrogen fixation and denitrification by Azospirillum brasilense grown in continuous culture
*Azospirillum*lipoferum*							# DOI:10.1071/PP01071  and  DOI:10.1007/BF00402122  and  Nelson et al. (1978) - Effect of oxygen and nitrate on nitrogen fixation and denitrification by Azospirillum brasilense grown in continuous culture
*Pseudovibrio*denitrificans*						# DOI:10.1099/ijs.0.63107-0
*Desulfococcus*cetonicum*							# DOI:10.1007/s11157-006-9118-8   and   DOI:10.1007/s002030050784
*Desulfosarcina*variabilis*							# DOI:10.1007/s11157-006-9118-8   and   DOI:10.1007/s002030050784
*Desulfococcus*multivorans*							# DOI:10.1007/s11157-006-9118-8   and   DOI:10.1007/s002030050784
*Thiomicrospira*denitrificans*						# DOI:10.1128/AEM.72.2.1364-1372.2006
*Sulfurimonas*denitrificans*						# DOI:10.1128/AEM.72.2.1364-1372.2006  and  DOI:10.1099/ijs.0.64255-0  and  DOI:10.1016/0077-7579(75)90008-3
*Thiomicrospira*denitrificans*						# DOI:10.1128/AEM.72.2.1364-1372.2006  and  DOI:10.1099/ijs.0.64255-0  and  DOI:10.1016/0077-7579(75)90008-3
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Nitratifractor*salsuginis*							# DOI:10.1099/ijs.0.64255-0
*Thauera*phenylacetica*								# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Thauera*aminoaromatica*							# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Azoarcus*buckelii*									# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Rugamonas*rubra*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Rhodoplanes*roseus*								# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodoplanes*elegans*								# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Rhodoplanes*							# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Rhodoplanes*						# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy.
*Comamonas*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acidovorax*delafieldii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acidovorax*temperans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Brachymonas*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillum*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Microvirgula*aerodenitrificans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*azotoformans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*subterraneus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Nitratiruptor*tergarcus*							# DOI:10.1099/ijs.0.63480-0
*Nitratifractor*salsuginis*							# DOI:10.1099/ijs.0.63480-0
*Costertonia*aggregata*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Propionibacterium*microaerophilum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioides*caricicola*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Iamia*majanohamensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Zunongwangia*profunda*								# DOI:10.1186/1471-2164-11-247  and  DOI:10.1111/j.1574-6968.2007.00694.x
*Pseudomonas*K172*									# DOI:10.1007/BF00414814
*Pseudomonas*S100*									# DOI:10.1007/BF00414814
*Thauera*aromatica*									# DOI:10.1007/BF00414814  and  DOI:10.1099/00207713-45-2-327  and  Biegert et al (1996). Evidence that anaerobic oxidation of toluene in the denitrifying bacterium Thauera aromatica is initiated by formation of benzylsuccinate from toluene and fumarate
*Azoarcus*evansii*									# DOI:10.1099/00207713-45-2-327
*Azoarcus*anaerobius*								# DOI:10.1099/00207713-48-3-953
*Shewanella*loihica*PV-4*							# DOI:10.1128/AEM.03872-12



nitrite_denitrification			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrate_denitrification					# assuming that all nitrate denitrifiers are also nitrite denitrifiers
*Rubrimonas*shengliensis*							# DOI:10.1016/j.syapm.2011.03.004
*Alcaligenes*faecalis*								# DOI:10.1099/00207713-33-1-85  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquaspirillaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy.
*Shewanella*denitrificans*							# DOI:10.1099/00207713-52-6-2211
*Methylomirabilis*oxyfera*							# DOI:10.1128/JB.05816-11
*Pseudovibrio*denitrificans*						# DOI:10.1099/ijs.0.63107-0
*Microvirgula*aerodenitrificans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*azotoformans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3



nitrous_oxide_denitrification			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrite_denitrification					# assuming that all nitite denitrifiers are also N2O denitrifiers
*Pseudomonas*perfectomarinus*						# DOI:10.1007/BF00413383
*Pseudomonas*stutzeri*								# DOI:10.1007/BF00413383
*Zobellella*denitrificans*							# DOI:10.1099/ijs.0.64121-0
*Aquaspirillaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Sinorhizobium*meliloti*							# DOI:10.1099/00221287-143-8-2817
*Pseudovibrio*denitrificans*						# DOI:10.1099/ijs.0.63107-0
*Microvirgula*aerodenitrificans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*azotoformans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3




denitrification			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# dissimilatory reduction of fixed nitrogen compounds (NO3, NO2, N2O ...) to dinitrogen
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrate_denitrification
add_group:nitrite_denitrification
add_group:nitrous_oxide_denitrification
*Pseudomonas*fluorescens*							# DOI:10.1007/BF00413383
*Pseudomonas*frederiksbergensis*					# DOI:10.1099/00207713-50-6-1957
*Marinobacter*maritimus*							# DOI:10.1099/ijs.0.63478-0


chitinolysis			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Arenicella*chitinivorans*							# DOI:10.1099/ijs.0.051599-0
*Chitinivibrio*alkaliphilus*						# DOI:10.1111/1462-2920.12284
*Clostridium*aminovalericum*						# DOI:10.1007/BF02931401
*Blastocatella*fastidiosa*							# DOI: 10.1016/j.syapm.2012.11.002
*Chitinolyticbacter*meiyuanensis*					# DOI:10.1007/s00284-011-9921-5
*Saccharophagus*degradans*							# DOI:10.1099/ijs.0.63627-0
*Microbulbifer*hydrolyticus*						# DOI:10.1099/00207713-47-2-369
*Siansivirga*zeaxanthinifaciens*					# DOI:10.1111/j.1574-6968.2012.02596.x
*Persicobacter*diffluens*							# DOI:10.1099/ijs.0.016113-0
*Persicobacter*psychrovividus*						# DOI:10.1099/ijs.0.016113-0
*Chitinilyticum*litopenaei*							# DOI:10.1099/ijs.0.005090-0
*Cytophaga*aquatilis*								# Reichardt et al. (1983) - Ecology and Taxonomy of Chitinoclastic Cytophagaand Related Chitin-Degrading Bacteria Isolated from an Estuary
*Cytophaga*johnsoniae*								# Reichardt et al. (1983) - Ecology and Taxonomy of Chitinoclastic Cytophagaand Related Chitin-Degrading Bacteria Isolated from an Estuary
*Flavobacterium*oceanosedimentum*					# Reichardt et al. (1983) - Ecology and Taxonomy of Chitinoclastic Cytophagaand Related Chitin-Degrading Bacteria Isolated from an Estuary
*Flavobacterium*aquatile*							# Reichardt et al. (1983) - Ecology and Taxonomy of Chitinoclastic Cytophagaand Related Chitin-Degrading Bacteria Isolated from an Estuary
*Flexibacter*elegans*								# Reichardt et al. (1983) - Ecology and Taxonomy of Chitinoclastic Cytophagaand Related Chitin-Degrading Bacteria Isolated from an Estuary
*Brevibacterium*linens*								# Reichardt et al. (1983) - Ecology and Taxonomy of Chitinoclastic Cytophagaand Related Chitin-Degrading Bacteria Isolated from an Estuary
*Cytophaga*johnsonae*								# Stanier (1947). Studies on Nonfruiting Myxobacteria I. Cytophaga johnsonae, n.sp., a Chitin-decomposing Myxobacterium			
*Streptomyces*coelicolor*							# DOI:10.1038/417141a
*Cellulomonas*uda*									# DOI:10.1128/AEM.68.10.5042–5050.2002
*Stenotrophomonas*maltophilia*						# DOI:10.1128/AEM.68.10.5042–5050.2002
*Arthrobacter*AJ250585*								# DOI:10.1128/AEM.68.10.5042–5050.2002
*Arthrobacter*AJ250586*								# DOI:10.1128/AEM.68.10.5042–5050.2002
*Janthinobacterium*lividum*							# DOI:10.1128/AEM.68.10.5042–5050.2002
*Doowaniella*chitinasigens*							# DOI:10.1128/AEM.68.10.5042–5050.2002
*Serratia*liquefaciens*								# DOI:10.1128/AEM.68.10.5042–5050.2002
*Streptomyces*coelicolor*							# DOI:10.1128/AEM.68.10.5042–5050.2002
*Streptomyces*thermoviolaceus*						# DOI:10.1128/AEM.68.10.5042–5050.2002
*Streptomyces*peucetius*							# DOI:10.1128/AEM.68.10.5042–5050.2002
*Streptomyces*plicatus*								# DOI:10.1128/AEM.68.10.5042–5050.2002  and  Béguin and Aubert (1994) - The biological degradation of cellulose
*Serratia*marcescens*								# DOI:10.1128/AEM.68.10.5042–5050.2002
*Vibrio*harvey*										# DOI:10.1128/AEM.68.10.5042–5050.2002
*Bacillus*circulans*								# DOI:10.1128/AEM.68.10.5042–5050.2002  and  Béguin and Aubert (1994) - The biological degradation of cellulose
*Bacillus*cereus*									# DOI:10.1128/AEM.68.10.5042–5050.2002
*Bacillus*licheniformis*							# DOI:10.1128/AEM.68.10.5042–5050.2002
*Kurthia*zopfii*									# DOI:10.1128/AEM.68.10.5042–5050.2002
*Clostridium*thermocellum*							# DOI:10.1128/AEM.68.10.5042–5050.2002
*Streptomyces*griseus*HUT6037*						# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*coelescens*							# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*cyanocolor*							# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*eurythermus*							# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*flavovirens*							# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*griseus*								# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*ipomoeae*								# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*prasinopilosus*						# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Streptomyces*scabies*								# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Serratia*marcescens*								# Watanabe et al. (1999). Family 19 chitinases of Streptomyces species: characterization and distribution
*Thermococcus*kodakarensis*							# DOI:10.1155/2004/204953
*Thermococcus*chitonophagus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chitinophaga*pinensis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*filiformis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*ginsengisoli*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sulfolobus*tokodaii*								# DOI:10.1016/j.micres.2011.11.001
*Streptomyces*lividans*								# DOI:10.1271/bbb.64.39
*Streptomyces*olivaceoviridis*						# Romaguera et al. (1992) - Chitinases of Streptomyces olivaceoviridis and significance of processing for multiplicity
*Actinomyces*kurssanovii*							# Tiunova et al. (1976) - Production of chitinase by Actinomyces kurssanovii and its properties
*Streptomyces*canus*								# Mane and Deshmukh (2009) - Chitin degrading potential of three aquatic actinomycetes and its optimization
*Streptomyces*pseudogriseolus*						# Mane and Deshmukh (2009) - Chitin degrading potential of three aquatic actinomycetes and its optimization
*Micromonospora*brevicatiana*						# Mane and Deshmukh (2009) - Chitin degrading potential of three aquatic actinomycetes and its optimization
*Streptomyces*lavendulae*							# Lungappa and Lockwood (1961) - A chitin medium for isolation, growth and maintenance of actinomycetes
*Bacillus*licheniformis*							# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Streptomyces*thermoviolaceus*						# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermococcus*chitonophagus*						# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermococcus*kodakaraensis*						# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Pyrococcus*furiosus*								# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Serratia*marcescens*								# Brurberg et al. (1996) - Comparative studies of chitinases A and B from Serratia marcescens
*Vibrio*furnissii*									# DOI:10.1074/jbc.M001042200
*Vibrio*alginolyticus*								# DOI:10.1099/13500872-142-8-2181
*Streptomyces*coelicolor*							# DOI:10.1271/bbb.63.710
*Burkholderia*gladioli*								# DOI:10.1016/S1389-1723(01)80123-7
*Vibrio*harveyi*									# Svitil et al. (1997) - Chitin degradation proteins produced by the marine bacterium Vibrio harveyi growing on different forms of chitin
*Pseudoalteromonas*S91*								# DOI:10.1099/13500872-145-4-925
*Nocardiopsis*prasina*								# DOI:10.1128/AEM.69.2.894-900.2003
*Chromobacterium*violaceum*							# Chernin et al. (1998) - Chitinolytic activity in Chromobacterium violaceum: substrate analysis and regulation by quorum sensing
*Streptomyces*griseus*HUT 6037*						# Ohno et al. (1996) - A modular family 19 chitinase found in the prokaryotic organism Streptomyces griseus HUT 6037
*Bacillus*chitinovorus*								# Zobell (1937) -  The occurrence and characteristics of chitinoclastic bacteria in the sea
*Limonium*bicolor*									# DOI:10.1155/2013/648382
*Chitinibacter*tainanensis*							# DOI:10.1099/ijs.0.02834-0
*Sanguibacter*C4*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Xanthomonadaceae*Lysobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sanguibacter*C4*									# DOI:10.1016/S0379-4172(06)60140-6
*Paenibacillus*thiaminolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Chitinophaga*pinensis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*filiformis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*ginsengisoli*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Gammaproteobacteria*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alteromonadaceae*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Schineria*larvae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ralstonia*A-471*									# DOI:10.1007/s00253-003-1351-2
*Aeromonas*hydrophila*H-2330*						# DOI:10.1271/bbb.61.174
*Alteromonas*O-7*									# DOI:10.2331/suisan.57.2127
*Isoptericola*jiangsuensis*							# DOI:10.1099/ijs.0.012864-0
*Pleuronectes*platessa*								# DOI:10.1099/00221287-136-4-695
*Clostridium*9.1*									# DOI:10.1099/00221287-136-4-695
*Salinimonas*lutimaris*								# DOI:10.1007/s10482-011-9695-6
*Delftia*lacustris*									# DOI:10.1099/ijs.0.008375-0
*Clostridium*paraputrificum*						# Morimoto et al (1997) - Cloning, sequencing, and expression of the gene encoding Clostridium paraputrificum chitinase ChiB and analysis of the functions of novel cadherin-like domains and a chitin-binding domain




knallgas_bacteria			elements:H,O; main_element:H; electron_donor:H; electron_acceptor:O; aerobic:yes; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Bacillus*tusciae*									# DOI:10.1007/BF00408386
*Kyrpidia*tusciae*									# DOI:10.1007/BF00408386  and  DOI:10.4056/sigs.2144922
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Thiosphaera*pantotropha*							# DOI:10.1099/00221287-129-9-2847  and  Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Paracoccus*pantotrophus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquificales*THS-11*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*THS-13*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*THS-25*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*TS-63*									# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*TS-17*									# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Ralstonia*eutropha*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquificales*Hydrogenobacter*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Gammaproteobacteria*Hydrogenovibrio*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Hydrogenovibrio*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Nitratifractor*salsuginis*							# DOI:10.1099/ijs.0.64255-0
*Acidovorax*delafieldii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sulfolobaceae*Acidianus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfolobaceae*Metallosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Hydrogenophilaceae*Hydrogenophilus*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pseudonocardia*autotrophica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Hydrogenovibrio*marinus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Arhodomonas*recens*								# DOI:10.1134/S002626171205013X
*Caminibacter*profundus*							# DOI:10.1099/ijs.0.02753-0
*Anaeromyxobacter*dehalogenans*						# DOI:10.1128/AEM.68.2.893–900.2002
*Tateyamaria*pelophila*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Hydrogenothermus*marinus*							# DOI:10.1099/00207713-51-5-1853
*Sulfurihydrogenibium*subterraneum*					# DOI:10.1099/ijs.0.02506-0
*Sulfurihydrogenibium*azorense*						# DOI:10.1099/ijs.0.02790-0
*Persephonella*hydrogeniphila*						# DOI:10.1099/ijs.0.02505-0
*Venenivibrio*stagnispumantis*						# DOI:10.1099/ijs.0.64842-0
*Sulfurihydrogenibium*kristjanssonii*				# DOI:10.1099/ijs.0.65570-0
*Thiomonas*islandica*								# DOI:10.1099/ijs.0.015511-0
*Vulcanithermus*mediatlanticus*						# DOI: 10.1099/ijs.0.02579-0
*Aquifex*pyrophilus*								# Huber et al (1992) - Aquifex pyrophilus gen. nov. sp. nov., Represents a Novel Group of Marine Hyperthermophilic Hydrogen-Oxidizing Bacteria
*Nitratiruptor*tergarcus*							# DOI:10.1099/ijs.0.63480-0
*Nitratifractor*salsuginis*							# DOI:10.1099/ijs.0.63480-0
*Pyrodictiaceae*Pyrolobus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea




dark_hydrogen_oxidation			elements:H; main_element:H; electron_donor:H; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# autotrophic or heterotrophic, H2 oxidation as energy or electron source, but not for photosynthesis
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:knallgas_bacteria
*Dissulfurirhabdus*thermomarina*					# DOI:10.1099/ijsem.0.001083
*Thermodesulfatator*autotrophicus*					# DOI:10.1099/ijsem.0.001297
*Desulfurella*amilsii*								# DOI:10.1099/ijsem.0.000866
*Thermodesulfobium*acidiphilum*						# DOI:10.1099/ijsem.0.001745
*Tepidibacillus*decaturensis*						# DOI:10.1099/ijsem.0.001295
*Dethiosulfatarculus*sandiegensis*					# DOI:10.1099/ijsem.0.000864
*Orenia*metallireducens*							# DOI:10.1128/AEM.02382-16
*Archaeoglobus*veneficus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Pyrodictiaceae*Pyrolobus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Pyrodictiaceae*Pyrodictium*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Dehalobacter*restrictus*							# DOI:10.1007/s002030050577
*Alkalibaculum*bacchi*								# DOI:10.1099/ijs.0.018507-0
*Eubacterium*aggregans*								# DOI:10.1006/anae.1998.0179
*Lachnospiraceae*Acetitomaculum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Sporomusa*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Dehalogenimonas*alkenigignens*						# DOI:10.1099/ijs.0.045054-0
*Hydrogenophaga*flava**								# DOI:10.1099/00207713-39-3-319
*Hydrogenophaga*palleronii*							# DOI:10.1099/00207713-39-3-319
*Hydrogenophaga*pseudoflava*						# DOI:10.1099/00207713-39-3-319
*Hydrogenophaga*taeniospiralis*						# DOI:10.1099/00207713-39-3-319
*Ammonifex*degensii*								# DOI:10.1016/S0723-2020(96)80007-5
*Wolinella*succinogenes*							# DOI:10.1128/AEM.02508-06
*Sulfurospirillum*deleyianum*						# DOI:10.1128/AEM.02508-06
*Rhizobiales*DAO10*									# DOI:10.1111/j.1462-2920.2005.00977.x
*Methanococcus*jannaschii*							# DOI:10.1007/BF00425213
*Hydrogenobaculum*H55*								# DOI:10.1128/AEM.70.3.1865-1868.2004
*Pseudomonas*arsenitoxidans*						# Turner (1954) - Bacterial oxidation of arsenite
*Thiobacillus*caldus*								# DOI:10.1099/13500872-140-12-3451
*Dehalococcoides*mccartyi*							# DOI:10.1099/ijs.0.034926-0
*Eubacterium*oxidoreducens*							# Krumholz and Bryant (1986) - Eubacterium oxidoreducens sp. nov. requiring H2 or formate to degrade gallate, pyrogallol, phloroglucinol and quercetin
*Deferribacter*abyssi*								# DOI: 10.1099/ijs.0.02673-0
*Desulfotomaculum*varum*							# DOI:10.1007/s13205-011-0017-5
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Deferribacter*desulfuricans*						# DOI:10.1099/ijs.0.02479-0
*Sulfurospirillum*arcachonense*						# DOI:10.1099/00207713-47-4-1212
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Desulfoconvexum*algidum*							# DOI:10.1099/ijs.0.043703-0
*Desulfovibrio*butyratiphilus*						# DOI:10.1099/ijs.0.013771-0
*Desulfovibrio*arcticus*							# DOI:10.1099/ijs.0.021451-0
*Desulfotomaculum*tongense*							# DOI:10.1007/s10482-013-0040-0
*Desulfuribacillus*alkaliarsenatis*					# DOI:10.1007/s00792-012-0459-7
*Desulfopila*inferna*								# DOI:10.1099/ijs.0.015644-0
*Carboxydothermus*pertinax*							# DOI:10.1099/ijs.0.031583-0
*Desulfovibrio*cavernae*							# DOI:10.1078/0723202041748181
*Desulfovibrio*oceani*								# DOI:10.1007/s10482-009-9403-y
*Desulfosalsimonas*propionicica*					# DOI:10.1099/ijs.0.014746-0
*Thermodesulfobacterium*geofontis*					# DOI:10.1007/s00792-013-0512-1
*Desulfitispora*alkaliphila*						# DOI:10.1007/s00792-010-0310-y
*Desulfovibrio*piezophilus*							# DOI:10.1099/ijs.0.028670-0
*Desulfosporosinus*acidiphilus*						# DOI:10.1007/s00792-010-0309-4
*Desulfonatronum*thiosulfatophilum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronum*thioautotrophicum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*magnus*						# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*thiodismutans*				# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*halophilus*					# DOI:10.1007/s00792-012-0440-5
*Acidianus*manzaensis*								# DOI:10.1007/s00284-006-0151-1
*Sulfurimonas*hongkongensis*						# DOI:10.4056/sigs.4948668
*Thiomicrospira*SP-41*								# DOI:10.1038/ismej.2014.173
*Thermodesulfatator*indicus*						# DOI:10.1099/ijs.0.02669-0
*Thermovibrio*ruber*								# DOI:10.1099/00207713-52-5-1859
*Thermovibrio*guaymasensis*							# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*atlanticum*						# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*pacificum*						# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*crinifex*						# DOI:10.1007/s00792-003-0329-4
*Desulfonauticus*autotrophicus*						# DOI:10.1007/s00792-008-0212-4
*Hydrogenovibrio*marinus*							# DOI:10.1007/s002030050584
*Thermolithobacter*ferrireducens*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Geothermobacterium*ferrireducens*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Caldimicrobium*rimae*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Treponema*intracellularis*							# DOI:10.1073/pnas.1423979112
*Ruminococcus*hydrogenotrophicus*					# DOI:10.1007/s002030050373
*Blautia*hydrogenotrophica*							# DOI:10.1099/ijs.0.65208-0  and  DOI:10.1007/s002030050373
*Ancylobacter*aquaticus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ancylobacter*dichloromethanicus*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ancylobacter*polymorphus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ancylobacter*vacuolatus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Methanoplasma*termitum*							# DOI:10.1128/AEM.03389-14
*Methanosphaera*stadtmanae*							# DOI:10.1128/JB.188.2.642-658.2006
*Methanogranum*caenicola*							# DOI:10.1264/jsme2.ME12189
*Methanomassiliicoccus*luminyensis*					# DOI:10.1099/ijs.0.033712-0
*Phorcysia*thermohydrogeniphila*					# DOI:10.1099/ijs.0.035642-0
*Thioreductor*micantisoli*							# DOI:10.1099/ijs.0.63351-0
*Caminibacter*hydrogeniphilus*						# DOI:10.1099/00207713-52-4-1317
*Caminibacter*mediatlanticus*						# DOI:10.1099/ijs.0.63430-0
*Deferribacter*autotrophicus*						# DOI:10.1099/ijs.0.006767-0
*Geoglobus*acetivorans*								# DOI:10.1099/ijs.0.011080-0
*Thermincola*ferriacetica*							# DOI:10.1007/s00792-006-0004-7
*Geoalkalibacter*subterraneus*						# DOI:10.1099/ijs.0.001537-0
*Caldithrix*abyssi*									# DOI:10.1099/ijs.0.02390-0
*Nautiliaceae*Lebetimonas*							# DOI:10.1038/ismej.2013.206			
*Sulfurimonas*gotlandica*							# DOI:10.3389/fmicb.2015.00989
*Sulfurimonas*paralvinellae*						# DOI:10.3389/fmicb.2015.00989
*Sulfurimonas*hongkongensis*						# DOI:10.3389/fmicb.2015.00989
*Thermosulfidibacter*takaii*						# DOI:10.1099/ijs.0.65349-0
*Nautilia*nitratireducens*							# DOI:10.1099/ijs.0.013904-0
*Cetia*pacifica*									# DOI:10.1099/ijs.0.000070
*Nautilia*abyssi*									# DOI:10.1099/ijs.0.005454-0
*Nautilia*profundicola*								# DOI:10.1099/ijs.0.65435-0
*Nitratiruptor*SB155-2*								# DOI:10.1073/pnas.0700687104
*Sulfurovum*NBC37-1*								# DOI:10.1073/pnas.0700687104
*Sulfurovum*aggregans*								# DOI:10.1099/ijs.0.065094-0
*Sulfuritalea*hydrogenivorans*						# DOI:10.1099/ijs.0.024968-0
*Methanobacterium*lacus*							# DOI:10.1099/ijs.0.034538-0
*Methanobacterium*aggregans*						# DOI:10.1099/ijs.0.000210
*Thiofractor*thiocaminus*							# DOI:10.1007/s00203-012-0814-1
*Methanothermobacter*tenebrarum*					# DOI:10.1099/ijs.0.041681-0
*Sulfurospirillum*alkalitolerans*					# DOI:10.1007/s00792-013-0538-4
*Desulfonatronum*alkalitolerans*					# DOI:10.1007/s00792-013-0538-4
*Methanolinea*mesophila*							# DOI:10.1099/ijs.0.035048-0
*Methanobacterium*lacus*							# DOI:10.1099/ijs.0.034538-0
*Methanobacterium*petrolearium*						# DOI:10.1099/ijs.0.022723-0
*Methanobacterium*ferruginis*						# DOI:10.1099/ijs.0.022723-0
*Desulfosoma*caldarium*								# DOI:10.1099/ijs.0.020586-0
*Methanobacterium*veterum*							# DOI:10.1099/ijs.0.011205-0
*Methanobacterium*kanagiense*						# DOI:10.1099/ijs.0.026013-0
*Methanoregula*boonei*								# DOI:10.1099/ijs.0.021782-0
*Lebetimonas*acidiphila*							# DOI:10.1099/ijs.0.63330-0
*Thioreductor*micantisoli*							# DOI:10.1099/ijs.0.63351-0
*Nautilia*lithotrophica*							# DOI:10.1099/00207713-52-4-1299
*Hydrogenobacter*acidophilus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Caminibacter*hydrogeniphilus*						# DOI:10.1371/journal.pgen.1000362
*Clostridium*aceticum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Acetobacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Methanospirillaceae*Methanospirillum*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Helicobacteraceae*Wolinella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Achromobacter*ruhlandii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidovorax*facilis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidovorax*delafieldii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bacillus*schlegelii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*tusciae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Herbaspirillum*autotrophicum*						# DOI:10.1099/00207713-28-1-112  and  DOI:10.1099/ijs.0.02975-0
*Aquaspirillum*autotrophicum*						# DOI:10.1099/00207713-28-1-112  and  DOI:10.1099/ijs.0.02975-0
*Pseudomonas*saccharophila*							# DOI:10.1099/ijs.0.65149-0  and  DOI:10.1099/ijs.0.63733-0
*Pelomonas*saccharophila*							# DOI:10.1099/ijs.0.65149-0  and  DOI:10.1099/ijs.0.63733-0
*Hydrogenomonas*thermophilus*						# Aragno (1992). Thermophilic, Aerobic, Hydrogen-Oxidizing (Knallgas) Bacteria. In: Balows et al (eds.), The Prokaryotes
*Xanthobacteraceae*Xanthobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Xanthobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Betaproteobacteriales*Hydrogenophaga*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Hydrogenophaga*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Hydrogenimonas*thermophila*						# DOI:10.1099/ijs.0.02787-0
*Xanthobacter*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Alpha, Beta, Delta, Epsilonproteobacteria
*Rhodobacteraceae*Paracoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfovibrio*desulfuricans*						# Seitz and Cypionka (1986) - Chemolithotrophic growth of Desulfovibrio desulfuricans with hydrogen coupled to ammonification of nitrate or nitrite
*Eubacteriaceae*Acetobacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Gammaproteobacteria*Hydrogenovibrio*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Hydrogenovibrio*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Desulfobulbaceae*Desulforhopalus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Coriobacteriales*Denitrobacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Denitrobacterium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Methanobacteriales*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Syntrophobacteraceae*Desulforhabdus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacterales*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacter*Desulfacinum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Thermoproteaceae*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrobaculum*aerophilum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Ignicoccaceae*Ignicoccus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Crenarchaeota*Ignicoccus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Euryarchaeota*Methanosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Archaeoglobaceae*Ferroglobus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Geobacter*hydrogenophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Veillonellaceae*Acetonema*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Ammonifex*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Thermovenabulum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*hafniense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*chlororespirans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Pyrobaculum*islandicum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrodictiaceae*Pyrodictium*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfolobaceae*Stygiolobus*							# DOI:10.1099/00207713-41-4-495  and  Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermoproteales*Thermoproteaceae*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*acrylicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*aespoeensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*africanus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*alcoholovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*aminophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*burkinensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*carbinolicus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*cuneatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gabonensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*giganteus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gigas*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*halophilus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*inopinatus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*intestinalis*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*litoralis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*longreachensis*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*longus*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*oxyclinae*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*piger*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*profundus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*salexigens*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*senezii*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*simplex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*vulgaris*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*zosterae*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Helicobacteraceae*Wolinella*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methanosarcinaceae*Methanosarcina*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1



nitrogen_fixation			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Burkholderia*insulsa*								# DOI:10.1099/ijs.0.064477-0
*Telmatospirillum*siberiense*						# DOI:10.1016/j.syapm.2006.06.003
*Rhizobiales*Methylocystis*							# DOI:10.1099/ijs.0.043505-0
*Methylocystaceae*Methylocystis*					# DOI:10.1099/ijs.0.043505-0 . Legacy taxonomy.
*Cohnella*plantaginis*								# DOI:10.1007/s10482-012-9715-1
*Anaerobacillus*alkalilacustre*						# DOI:10.1134/S0026261709060095
*Sinorhizobium*fredii*								# Reuhs et al (1998) - Sinorhizobium fredii and Sinorhizobium meliloti Produce Structurally Conserved Lipopolysaccharides and Strain-Specific K Antigens
*Sinorhizobium*meliloti*							# Reuhs et al (1998) - Sinorhizobium fredii and Sinorhizobium meliloti Produce Structurally Conserved Lipopolysaccharides and Strain-Specific K Antigens
*Azospirillum*canadense*							# DOI:10.1099/ijs.0.64804-0
*Azospirillum*doebereinerae*						# DOI:10.1099/00207713-51-1-17  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Azospirillum*largimobile*							# DOI:10.1099/00207713-49-2-541
*Azospirillum*halopraeferens*						# DOI:10.1099/00207713-37-1-43
*Azospirillum*brasilense*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*communis*									# Reinhold-hurek (1993) - Azoarcus gen, nov.,Nitrogen-Fixing Proteobacteria Associated with Roots of Kallar Grass (LeptochZoafusca (L.) Kunth), and Description of Two Species, Azoarcus indigens sp. nov. andhoarcus communis sp. nov.
*Arcobacter*nitrofigilis*							# DOI:10.4056/sigs.912121
*Rhizobium*TNAU-14*									# DOI:10.1007/BF03175347
*Rhodopseudomonas*sphaeroides*						# DOI:10.1128/AEM.68.5.2140-2147.2002
*Leptospirillum*ferrodiazotrophum*					# DOI:10.1128/AEM.02943-08  and  DOI:10.1128/AEM.71.10.6319–6324.2005
*Azospirillum*soli*									# DOI:10.1099/ijsem.0.000618
*Marinobacterium*mangrovicola*						# DOI:10.1099/ijs.0.067462-0
*Azospirillum*fermentarium*							# DOI:10.1099/ijs.0.050872-0
*Pontibacter*diazotrophicus*						# DOI:10.1371/journal.pone.0092294
*Methyloglobulus*morosus*							# DOI:10.1016/j.syapm.2014.02.001
*Rhizobium*azibense*								# DOI:10.1099/ijs.0.058651-0
*Cellvibrio*diazotrophicus*							# DOI:10.1099/ijs.0.054817-0
*Burkholderia*caballeronis*							# DOI:10.1007/s10482-013-0028-9
*Agromonas*oligotrophica*							# DOI:10.1128/AEM.00009-13  and  DOI:10.1007/BF00399322
*Bradyrhizobium*oligotrophicum*						# DOI:10.1128/AEM.00009-13  and  DOI:10.1007/BF00399322
*Azoarcus*olearius*									# DOI:10.1099/ijs.0.050609-0
*Azospirillum*humicireducens*						# DOI:10.1099/ijs.0.046813-0
*Mangrovibacterium*diazotrophicum*					# DOI:10.1099/ijs.0.052779-0
*Niveispirillum*cyanobacteriorum*					# DOI:10.1099/ijs.0.000299
*Anabaena*azotica*									# DOI:10.1007/s10811-011-9670-7
*Diplosphaera*colitermitum*							# DOI:10.1128/AEM.06466-11
*Treponema*intracellularis*							# DOI:10.1073/pnas.1423979112
*Derxia*gummosa*									# DOI:10.1007/BF00412286
*Derxia*lacustris*									# DOI:10.1099/ijs.0.041186-0
*Enterobacter*sacchari*								# DOI:10.1099/ijs.0.045500-0
*Burkholderia*heleia*								# DOI:10.1099/ijs.0.015198-0
*Pleomorphomonas*diazotrophica*						# DOI:10.1099/ijs.0.044461-0
*Arcobacter*sulfidicus*								# DOI:10.1128/AEM.68.1.316–325.2002
*Magnetospiraceae*Magnetospira*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodospirillaceae*Magnetospira*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy
*Beijerinckiaceae*Methylocapsa*						# DOI:10.1099/ijs.0.020149-0
*Tistlia*consotensis*								# DOI:10.1099/ijs.0.010926-0
*Chlorobium*tepidum*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Heliobacterium*modesticaldum*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanococcus*maripaludis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanococcus*aeolicus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanothermococcus*thermolithotrophus*			# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanospirillaceae*Methanospirillum*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanosarcina*barkeri*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfomonile*tiedjei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Azospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclus*tenuis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodoferax*fermentans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rubrivivax*gelatinosus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Herbaspirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Oxalobacteraceae*Herbaspirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Betaproteobacteriales*Derxia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcaligenaceae*Derxia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Beijerinckiaceae*Beijerinckia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Beijerinckiaceae*Methylocella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Agromonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Xanthobacteraceae*Xanthobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Xanthobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Burkholderia*vietnamiensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Phaeospirillum*fulvum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Phaeospirillum*molischianum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gluconacetobacter*diazotrophicus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodopila*globiformis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Magnetospirillum*gryphiswaldense*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Magnetospirillum*magnetotacticum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillum*photometricum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclus*tenuis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rubrivivax*gelatinosus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Allochromatium*vinosum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Allochromatium*warmingii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lamprobacter*modestohalophilus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marichromatium*gracile*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiococcus*pfennigii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*violacea*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*minor*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiorhodococcus*minor*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Beggiatoaceae*Beggiatoa*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiotrichaceae*Beggiatoa*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Methylacidiphilum*kamchatkensis*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Propionispira*arboris*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Orenia*salinaria*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Moorella*thermoautotrophica*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiales*Heliobacteriaceae*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Clostridium*butyricum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Cyanobacteria*Trichodesmium*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Azospirillaceae*Azospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillaceae*Azospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Arcobacter*nitrofigilis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*leguminosarum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*etli*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*galegae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*gallicum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*giardinii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*hainanense*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*huautlense*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*mongolense*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*tropici*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Allorhizobium*undicola*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2  and  Lajudie et al. (1998). Allorhizobium undicola gen. nov., sp. nov., nitrogen-fixing bacteria that efficiently nodulate Neptunia natans in Senegal
*Sinorhizobium*fredii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sinorhizobium*medicae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sinorhizobium*meliloti*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sinorhizobium*saheli*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sinorhizobium*terangae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sinorhizobium*xinjangense*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Mesorhizobium*loti*								# DOI:10.1007/s11104-008-9833-8
*Ensifer*meliloti*									# DOI:10.1007/s11104-008-9833-8
*Rhodobacter*sphaeroides*							# DOI:10.1007/s11104-008-9833-8
*Bradyrhizobium*japonicum*							# DOI:10.1007/s11104-008-9833-8
*Rhizobiales*Bradyrhizobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Bradyrhizobium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodospirillum*rubrum*								# DOI:10.1007/s11104-008-9833-8
*Sphingomonas*azotifigens*							# DOI:10.1007/s11104-008-9833-8
*Burgholderia*fungorum*								# DOI:10.1007/s11104-008-9833-8
*Azotobacter*vinelandii*							# DOI:10.1007/s11104-008-9833-8
*Magnetococcus*										# DOI:10.1007/s11104-008-9833-8
*Chlorobium*tepidum*								# DOI:10.1007/s11104-008-9833-8
*Clostridium*acetobutylicum*						# DOI:10.1007/s11104-008-9833-8
*Paenibacillus*durus*								# DOI:10.1007/s11104-008-9833-8
*Desulfitobacterium*hafniense*						# DOI:10.1007/s11104-008-9833-8
*Heliobacterium*chlorum*							# DOI:10.1007/s11104-008-9833-8
*Trichodesmium*erythraeum*							# DOI:10.1007/s11104-008-9833-8
*Nostoc*punctiforme*								# DOI:10.1007/s11104-008-9833-8
*Methanococcus*maripaludis*							# DOI:10.1007/s11104-008-9833-8
*Methanothermobacter*thermautotrophicus*			# DOI:10.1007/s11104-008-9833-8
*Methanosarcina*mazei*								# DOI:10.1007/s11104-008-9833-8
*Methanosarcina*barkeri*							# DOI:10.1007/s11104-008-9833-8
*Methanosarcina*acetivorans*						# DOI:10.1007/s11104-008-9833-8
*Crocosphaera*watsonii*								# DOI:10.1111/jpy.12090
*Cyanobacteria*Cyanothece*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Anabaena*variabilis*								# DOI:10.1016/j.tim.2010.12.004
*Anabaena*azollae*									# DOI:10.1016/j.tim.2010.12.004
*Cyanobacteria*Nostoc*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Cyanobacteria*Calothrix*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Xanthobacter*flavus*								# Malik and Claus (1979). Xanthobacter flavus, a New Species of Nitrogen-Fixing Hydrogen Bacteria
*Rhizobiaceae*Sinorhizobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiaceae*Allorhizobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonadaceae*Azotobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridium*aceticum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*acetobutylicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*akagii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*alkalicellulosi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*arcticum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*felsineum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*beijerinckii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*pasteurianum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Heliorestis*convoluta*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Methanosarcina*barkeri*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Nostoc*PCC 7120*									# DOI:10.1007/s11104-008-9833-8
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodopseudomonas*palustris*						# DOI:10.1038/nbt923  and  DOI:10.1007/s11104-008-9833-8
*Burkholderia*vietnamiensis*						# DOI:10.1007/s00284-013-0330-9
*Burkholderia*ferrariae*							# DOI:10.1007/s00284-013-0330-9
*Methylocapsa*acidiphila*							# DOI:10.1099/00207713-52-1-251
*Methylobacter*psychrophilus*						# DOI:10.1016/j.femsec.2005.02.010
*Methylocella*palustris*							# DOI:10.1016/j.femsec.2005.02.010
*Methylocella*silvestris*							# DOI:10.1016/j.femsec.2005.02.010
*Methylocella*tundrae*								# DOI:10.1016/j.femsec.2005.02.010
*Methylocapsa*acidiphila* 							# DOI:10.1016/j.femsec.2005.02.010
*Methylomonas*scandinavica*							# DOI:10.1016/j.femsec.2005.02.010
*Methylacidiphilum*fumariolicum*					# DOI:10.1099/mic.0.036061-0
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Rhodocyclaceae*Azospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Azovibrio*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Magnetospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Magnetospirillum*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Beijerinckiaceae*Beijerinckia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Beijerinckiaceae*Methylocella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bradyrhizobiaceae*Agromonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*cepacia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*vietnamiensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfomonile*tiedjei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodoferax*antarcticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Methylomonas*fodinarum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylomonas*aurantiaca*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylomonas*methanica*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylococcales*Methylosphaera*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylosphaera*Methylosphaera*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Agromonas*oligotrophica*							# DOI:10.1128/AEM.00009-13
*Bradyrhizobium*oligotrophicum*						# DOI:10.1128/AEM.00009-13
*Methanospirillaceae*Methanospirillum*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Herbaspirillum*rubrisubalbicans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Herbaspirillum*frisingense*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Herbaspirillum*seropedicae*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridiaceae*Anaerobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Methylovirgula*ligni*								# DOI:10.1099/ijs.0.010074-0



nitrate_ammonification			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory reduction of nitrate to ammonium (DNRA)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Shewanella*SLB-1*									# DOI:10.1111/1462-2920.12110
*Shewanella*YLB-1*									# DOI:10.1111/1462-2920.12110
*Denitrovibrio*acetiphilus*							# DOI:10.4056/sigs.892105
*Bacillus*vireti*									# DOI:10.1111/1462-2920.12478
*Rhizobium*TNAU-14*									# DOI:10.1007/BF03175347
*Ammonifex*degensii*								# DOI:10.1016/S0723-2020(96)80007-5
*Nautilia*profundicola*								# DOI:10.3389/fmicb.2013.00180
*Wolinella*succinogenes*							# DOI:10.1128/AEM.02508-06
*Sulfurospirillum*deleyianum*						# DOI:10.1128/AEM.02508-06
*Desulfurispirillum*indicum*						# DOI:10.1111/j.1574-6941.2012.01351.x
*Calditerrivibrio*nitroreducens*					# DOI:10.1099/ijs.0.65714-0
*Chrysiogenes*arsenatis*							# DOI:10.1099/00207713-46-4-1153
*Thermovenabulum*ferriorganovorum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Thermovibrio*ruber*								# DOI:10.1099/00207713-52-5-1859
*Thermovibrio*guaymasensis*							# DOI:10.1099/ijs.0.63994-0
*Desulfurobacterium*atlanticum*						# DOI:10.1099/ijs.0.63994-0
*Desulfurispirillum*alkaliphilum*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Thioreductor*micantisoli*							# DOI:10.1099/ijs.0.63351-0
*Bacillus*subtilis*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Nautilia*profundicola*								# DOI:10.3389/fmicb.2013.00180
*Shewanella*oneidensis*								# DOI:10.1128/JB.01194-06
*Flavobacterium*ATCC33514*							# DOI:10.1128/JB.01194-06
*Wolinella*succinogenes*							# DOI:10.1128/AEM.02508-06
*Sulfurospirillum*deleyianum*						# DOI:10.1128/AEM.02508-06
*Enterobacter*aerogenes*							# DOI:10.1080/01490450500533866
*Enterobacter*cloacae*								# DOI:10.1080/01490450500533866
*Klebsiella*pnemoniae*								# DOI:10.1080/01490450500533866
*Klebsiella*oxytoca*								# DOI:10.1080/01490450500533866
*Serratia*marcescens*								# DOI:10.1080/01490450500533866
*Aeromonas*encheleia*								# DOI:10.1080/01490450500533866
*Pectobacterium*carotovorum*						# DOI:10.1080/01490450500533866
*Desulfovibrio*desulfuricans*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*vulgaris*							# DOI:10.1080/01490450500533866
*Desulfovibrio*saprovorans*							# DOI:10.1080/01490450500533866
*Desulfobulbus*propionicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridium*thermoacticum*							# Gasche, Papen and Rennenberg (2013). Trace Gas Exchange in Forest Ecosystems. ISBN: 9789401598569
*Arthrobacter*globiformis*							# DOI:10.1016/S0378-1097(03)00383-5
*Arthrobacter*nicotianae*							# DOI:10.1016/S0378-1097(03)00383-5
*Gammaproteobacteria*Thioploca*						# DOI:10.1111/j.1574-6941.1999.tb00585.x  and  DOI:10.1128/AEM.67.12.5530-5537.2001
*Thiotrichaceae*Thioploca*							# DOI:10.1111/j.1574-6941.1999.tb00585.x  and  DOI:10.1128/AEM.67.12.5530-5537.2001 . Legacy taxonomy
*Desulforhopalus*singaporensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sulfurospirillum*arsenophilum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*selenatarsenatis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Garciella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Ammonifex*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carboxydothermus*ferrireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermovenabulum*ferriorganovorum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermovibrio*ammonificans*							# Vetriani et al. (2004) - Thermovibrio ammonificans sp. nov., a thermophilic, chemolithotrophic, nitrate-ammonifying bacterium from deep-sea hydrothermal vents
*Caminibacter*mediatlanticus*						# DOI:10.1099/ijs.0.63430-0  and  Voordeckers, et al. (2005) - Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
*Petrimonas*sulfuriphila*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Denitrobacterium*detoxificans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Slackia*heliotrinireducens*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lactobacillus*plantarum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*pentosus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Proteus*terrae*									# DOI:10.1007/s10482-015-0601-5
*Nautilia*nitratireducens*							# DOI:10.1099/ijs.0.013904-0
*Caldithrix*abyssi*									# DOI:10.1099/ijs.0.02390-0
*Caminibacter*profundus*							# DOI:10.1099/ijs.0.02753-0
*Caminibacter*mediatlanticus*						# DOI:10.1099/ijs.0.63430-0
*Caminibacter*hydrogeniphilus*						# DOI:10.1099/00207713-52-4-1317
*Phorcysia*thermohydrogeniphila*					# DOI:10.1099/ijs.0.035642-0
*Anaeromyxobacter*dehalogenans*						# DOI:10.1128/AEM.68.2.893–900.2002
*Desulfurobacterium*crinifex*						# DOI:10.1007/s00792-003-0329-4
*Desulfurobacterium*pacificum*						# DOI:10.1099/ijs.0.63994-0



nitrite_ammonification			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrate_ammonification					# assuming that all nitrate ammonifiers are also nitrite ammonifiers
*Lactobacillus*plantarum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*pentosus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*delbrueckii*lactis*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*sakei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*farciminis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*brevis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*buchneri*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillus*suebicus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfovibrio*gigas*								# Barton (1983) - Energy coupling to nitrite respiration in the sulfate-reducing bacterium Desulfovibrio gigas
*Wolinella*succinogenes*							# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Sulfurospirillum*deleyianum*						# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Campylobacter*sputorum*bubulus*					# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Desulfovibrio*desulfuricans*						# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Escherichia*coli*									# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Clostridium*butyricum*								# DOI:10.1111/j.1574-6968.1989.tb03498.x


nitrite_respiration			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrite_ammonification
add_group:nitrite_denitrification
add_group:anammox
*Desulfotomaculum*ferrireducens*					# DOI:10.1099/ijsem.0.001139
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Thauera*phenylacetica*								# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Thauera*aminoaromatica*							# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Azoarcus*buckelii*									# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Shewanella*woodyi*									# DOI:10.1099/00207713-47-4-1034
*Rhodopseudomonas*sphaeroides*2.4.3*				# DOI:10.1128/AEM.68.5.2140-2147.2002
*Chrysiogenes*arsenatis*							# DOI:10.1099/00207713-46-4-1153
*Oceanithermus*desulfurans*							# DOI: 10.1099/ijs.0.02962-0
*Pseudomonas*perfectomarinus*						# Matsubara et al (1982) - Modulation by copper of the products of nitrite respiration in Pseudomonas perfectomarinus
*Neisseria*gonorrhoeae*								# Knapp and Clark (1984) - Anaerobic growth of Neisseria gonorrhoeae coupled to nitrite reduction
*Neisseria*meningitidis*							# DOI:10.1111/j.1365-2958.2005.04866.x
*Pseudomonas*chlororaphis*							# DOI:10.1007/BF00413383
*Pseudomonas*aureofaciens*							# DOI:10.1007/BF00413383
*Nisaea*nitritireducens*							# DOI:10.1099/ijs.0.64592-0
*Thiohalomonas*nitratireducens*						# DOI:10.1099/ijs.0.65112-0
*Thiosphaera*pantotropha*							# DOI:10.1099/00221287-129-9-2847  and  Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Rhodocyclaceae*Thauera*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Flavobacterium*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Paenibacillus*anaericanus*							# DOI:10.1099/ijs.0.63484-0
*Dechloromonas*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Geobacillus*thermodenitrificans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*thermodenitrificans*						# DOI:10.1099/00207713-51-2-433  and  Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3


cellulolysis			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Clostridium*carboxidivorans*						# DOI:10.1099/ijs.0.63482-0
*Cohnella*cellulosilytica*							# DOI:10.1099/ijs.0.032607-0
*Bacillus*cellulosilyticus*							# DOI:10.1099/ijs.0.63649-0
*Bacillus*akibai*									# DOI:10.1099/ijs.0.63649-0
*Bacillus*wakoensis*								# DOI:10.1099/ijs.0.63649-0
*Blastocatella*fastidiosa*							# DOI: 10.1016/j.syapm.2012.11.002
*Telmatobacter*bradus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Saccharophagus*degradans*							# DOI:10.1099/ijs.0.63627-0
*Microbulbifer*hydrolyticus*						# DOI:10.1099/00207713-47-2-369
*Sagittula*stellata*								# DOI:10.1099/00207713-47-3-773
*Cellvibrio*diazotrophicus*							# DOI:10.1099/ijs.0.054817-0
*Mangrovibacterium*diazotrophicum*					# DOI:10.1099/ijs.0.052779-0
*Cohaesibacter*gelatinilyticus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Saprospiraceae*Lewinella*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Sorangium*cellulosum*								# DOI:10.1099/ijs.0.003814-0
*Byssovorax*cruenta*								# DOI:10.1099/ijs.0.003814-0  and  DOI:10.1099/ijs.0.63628-0
*Myxococcus*cruentus*								# DOI:10.1099/ijs.0.63628-0
*Archangium*gephyra*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Arcticibacter*svalbardensis*						# DOI:10.1099/ijs.0.044420-0
*Telmatobacter*bradus*								# DOI:10.1099/ijs.0.029629-0
*Herbinix*hemicellulosilytica*						# DOI:10.1099/ijs.0.000264
*Fervidobacterium*riparium*							# DOI:10.1099/ijs.0.026070-0
*Caldicellulosiruptor*obsidiansis*					# DOI:10.1128/AEM.01903-09  and  DOI:10.1007/s00792-013-0512-1
*Clostridium*chartatabidum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Polyangiaceae*Sorangium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aspergillus*terreus*								# Hrmova et al (1991). Induction of cellulose- and xylan-degrading enzyme systems in Aspergillus terreus by homo- and heterodisaccharides composed of glucose and xylose
*Cytophagales*Cytophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulomonas*flavigena*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*biazotea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*bogoriensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*cellasea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*composti*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*fimi*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*gelida*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*iranensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*persica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*terrae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*uda*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*xylanilytica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cytophagaceae*Cytophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Clostridium*cellulovorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacteroidetes*Dyadobacter*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Dyadobacter*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Clostridium*longisporum*							# Béguin and Aubert (1994) - The biological degradation of cellulose
*Agaricus*bisporus*									# Béguin and Aubert (1994) - The biological degradation of cellulose
*Bacillus*lautus*									# Béguin and Aubert (1994) - The biological degradation of cellulose
*Caldocellum*saccharolyticum*						# Béguin and Aubert (1994) - The biological degradation of cellulose
*Cellulomonas*fimi*									# Béguin and Aubert (1994) - The biological degradation of cellulose
*Clostridium*cellulovorans*							# Béguin and Aubert (1994) - The biological degradation of cellulose
*Clostridium*stercorarium*							# Béguin and Aubert (1994) - The biological degradation of cellulose
*Clostridium*thermocellurn*							# Béguin and Aubert (1994) - The biological degradation of cellulose
*Erwinia*chrysanthemi*								# Béguin and Aubert (1994) - The biological degradation of cellulose
*Clostridium*cellobioparum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lentocellum*							# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*cellulofermentans*						# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*cellulolyticum*						# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*josui*									# Leschine (1995) - Cellulose degradation in anaerobic environments
*Acetivibrio*cellulolyticus*						# Leschine (1995) - Cellulose degradation in anaerobic environments
*Bacteroides*cellulosolvens*						# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*aldrichii*								# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*celerecrescens*						# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*populeti*								# Leschine (1995) - Cellulose degradation in anaerobic environments
*Clostridium*papyrosolvens*							# Leschine (1995) - Cellulose degradation in anaerobic environments
*Caldicellulosiruptor*saccharolyticus*				# Rainey et al. (1994) - Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: an obligately anaerobic, extremely thermophilic, cellulolytic bacterium
*Eubacterium*cellulosolvens*						# Anderson and Blair (1996). Regulation of the cellulolytic activity of Eubacterium cellulosolvens 5494: a review
*Butyrivibrio*proteoclasticus*						# DOI:10.1021/pr200864j
*Thermobifida*fusca*								# DOI:10.1128/JB.01899-06
*Thermomonospora*fusca*								# Béguin and Aubert (1994) - The biological degradation of cellulose
*Sporocytophaga*myxococcoides*						# DOI:10.1128/genomeA.01154-14
*Cytophaga*hutchinsonii*							# DOI:10.1128/AEM.00225-07
*Spirochaeta*cytophaga*								# DOI:10.1017/S0021859600004755
*Ruminococcus*flavefaciens*							# Latham and Wolin (1977). Fermentation of cellulose by Ruminococcus flavefaciens in the presence and absence of Methanobacterium ruminantium
*Ruminococcus*albus*								# DOI:10.1128/JB.05621-11
*Ruminococcus*champanellensis*						# DOI:10.1099/ijs.0.027375-0
*Bacteroides*succinogenes*							# DOI:10.1007/BF00263846
*Fibrobacter*succinogenes*							# DOI:10.1007/BF00263846
*Acidothermus*cellulolyticus*						# DOI:10.1128/MMBR.66.3.506–577.2002
*Bacillus*pumilis*									# DOI:10.1128/MMBR.66.3.506–577.2002
*Caldibacillus*cellovorans*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Cellulomonas*flavigena*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Cellulomonas*uda*									# DOI:10.1128/MMBR.66.3.506–577.2002
*Cellvibrio*fulvus*									# DOI:10.1128/MMBR.66.3.506–577.2002
*Cellvibrio*gilvus*									# DOI:10.1128/MMBR.66.3.506–577.2002
*Erwinia*carotovora*								# DOI:10.1128/MMBR.66.3.506–577.2002
*Micromonospora*chalcae*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Pseudomonas*fluorescens*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Rhodothermus*marinus*								# DOI:10.1128/MMBR.66.3.506–577.2002
*Streptomyces*reticuli*								# DOI:10.1128/MMBR.66.3.506–577.2002
*Anaerocellum*thermophilum*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Butyrivibrio*fibrisolvens*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Caldicellulosiruptor*saccharolyticum*				# DOI:10.1128/MMBR.66.3.506–577.2002
*Fervidobacterium*islandicum*						# DOI:10.1128/MMBR.66.3.506–577.2002
*Halocella*cellulolytica*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Spirochaeta*thermophila*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Thermotoga*neapolitana*							# DOI:10.1128/MMBR.66.3.506–577.2002
*Micrococcus*cytophagus*							# DOI:10.2307/3625647
*Bacillus*agaradhaerens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*subtilis*									# DOI:10.5402/2012/650563
*Bacillus*thuringiensis*							# Lin et al (2012). Characterization of extracellular cellulose-degrading enzymes from Bacillus thuringiensis strains
*Clostridium*cellulolyticum*						# DOI:10.1111/j.1574-6968.2002.tb11450.x
*Clostridium*thermocellum*							# DOI:10.1111/j.1574-6968.2002.tb11450.x
*Clostridium*josui*									# DOI:10.1111/j.1574-6968.2002.tb11450.x
*Polyangiaceae*Sorangium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Cellulosimicrobium*cellulans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Isoptericola*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Xylanimonas*cellulosilytica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*subroseum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudomonadaceae*Cellvibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Gammaproteobacteria*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alteromonadaceae*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Erwinia*chrysanthemi*								# Garibaldi et al. (1973) - Pectolytic, cellulolytic and prote- olytic enzymes produced by isolated of Erwinia chrysanthemi
*Rhodobacteraceae*Sagittula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acidovorax*anthurii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Byssophaga*cruenta*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Polyangiaceae*Sorangium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Polyangiaceae*Byssophaga*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Clostridium*alkalicellum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*agaradhaerens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*curdlanolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*favisporus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*glucanolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*lautus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*pabuli*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*cellulosilyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacterium*indicireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldrichii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*alkalicellulosi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*celerecrescens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellobioparum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulosi*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*chartatabidum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*drakei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*herbivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*jejuense*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*josui*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lentocellum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*phytofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*stercorarium*leptospartum*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*straminisolvens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*termitidis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*thermocellum**							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*cellulosolvens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcus*flavefaciens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acetivibrio*cellulolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acetivibrio*cellulosolvens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halocella*cellulolytica*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobiaceae*Halocella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*thermocopriae*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*saccharolyticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*kristjanssonii*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*lactoaceticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*owensensis*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brachybacterium*zhongshanense*						# Zhang et al. (2007) - Brachybacterium zhongshanense sp. nov., a cellulose-decomposing bacterium from sediment along the Qijiang River, Zhongshan City, China
*Bacteroides*cellulosolvens*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*sancti*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Aureispira*marina*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophaga*hutchinsonii*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophaga*aurantiaca*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Sporocytophaga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*FIbrobacteraceae*Fibrobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Williamsia*marianensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Acidothermaceae*Acidothermus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nesterenkonia*lutea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*terrae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermacoccus*abyssi*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Jonesia*denitrificans*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agromyces*ulmi*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Cellulosimicrobium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Haloactinobacterium*album*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*chalcea*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*aurantiaca*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*halophytica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*pallida*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Aeromicrobium*ponti*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharomonospora*xinjiangensis*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*flava*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*endophytica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*cellulolyticus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*hainanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*pharetrae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*pseudovulgare*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*purpuratum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*yunnanenis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*subroseum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*yunnanense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*rubrum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermobifida*cellulosilytica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Herpetosiphon*geysericola*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Herbivorax*saccincola*								# DOI:10.1099/ijsem.0.001374




xylanolysis			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Herbivorax*saccincola*								# DOI:10.1099/ijsem.0.001374
*Pelolinea*submarina*								# DOI:10.1099/ijs.0.057547-0
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Koribacter*versatilis*								# DOI:10.1007/978-3-642-38954-2_160
*Lysinibacillus*xylanilyticus*						# DOI:10.1099/ijs.0.013367-0
*Cohnella*formosensis*								# DOI:10.1099/ijs.0.045831-0
*Cohnella*thailandensis*							# DOI:10.1099/ijs.0.015859-0
*Cohnella*damensis*									# Luo et al (2010) - Cohnella damensis sp. nov., a motile xylanolytic bacteria isolated from a low altitude area in Tibet
*Chryseolinea*serpens*								# DOI:10.1099/ijs.0.039404-0
*Mucilaginibacter*gynuensi*							# DOI:10.1099/ijs.0.050153-0
*Clostridium*xylanovorans*							# DOI:10.1016/S0723-2020(99)80044-7
*Pyrinomonas*methylaliphatogenes*					# DOI:10.1099/ijs.0.055079-0
*Telmatobacter*bradus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Meiothermus*rufus*									# DOI:10.1016/j.syapm.2009.05.002
*Caldicoprobacter*algeriensis*						# DOI:10.1007/s00284-010-9789-9
*Saccharophagus*degradans*							# DOI:10.1099/ijs.0.63627-0
*Microbulbifer*hydrolyticus*						# DOI:10.1099/00207713-47-2-369
*Paraprevotella*xylaniphila*						# DOI:10.1099/ijs.0.008169-0
*Rubrobacter*xylanophilus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria
*Zunongwangia*profunda*								# DOI:10.1007/s00792-014-0629-x
*Mesoflavibacter*zeaxanthinifaciens*				# DOI:10.1016/j.syapm.2006.12.003  and  DOI:10.1128/JB.05793-11
*Myxococcaceae*Corallococcus*						# DOI:10.1099/ijs.0.003566-0
*Elioraea*tepidiphila*								# DOI:10.1099/ijs.0.65294-0
*Cohnella*xylanilytica*								# DOI:10.1099/ijs.0.017855-0
*Cohnella*terrae*									# DOI:10.1099/ijs.0.017855-0
*Alkalitalea*saponilacus*							# DOI:10.1099/ijs.0.038315-0
*Themoanaerobacterium*calidifontis*					# DOI:10.1007/s00203-013-0895-5
*Marinimicrobium*haloxylanilyticum*					# DOI:10.1007/s10482-010-9472-y
*Oceanotoga*teriensis*								# DOI:10.1099/ijs.0.018036-0
*Fervidobacterium*riparium*							# DOI:10.1099/ijs.0.026070-0
*Clostridium*aerotolerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Xanthomonas*campestris*							# DOI:10.1111/nph.12187
*Xanthomonas*citri*									# DOI:10.1128/AEM.03091-14
*Caldocellum*saccharolyticum*						# Luthi et al (1990). Cloning, sequence analysis and expression of genes encoding xylan-degrading enzymes from the thermophile Caldocellum saccharolyticum
*Xanthomonas*oryzae*								# DOI:10.1094/MPMI.2000.13.4.394
*Bacteroides*cellulosilyticus*						# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*eggerthii*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*fragilis*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*intestinalis*							# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*ovatus*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*fragilis*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*thetaiotaomicron*						# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*vulgatus*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Bacteroides*xylanisolvens*							# DOI:10.1111/j.1365-2958.2010.07473.x
*Prevotella*albensis*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Prevotella*bryantii*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Prevotella*ruminicola*								# DOI:10.1111/j.1365-2958.2010.07473.x
*Alcaligenes*XY-234*								# DOI:10.2323/jgam.44.269
*Aspergillus*terreus*								# Hrmova et al (1991). Induction of cellulose- and xylan-degrading enzyme systems in Aspergillus terreus by homo- and heterodisaccharides composed of glucose and xylose
*Vibrio*XY-214*										# DOI:10.1128/AEM.66.4.1741-1743.2000
*Butyrivibrio*proteoclasticus*						# DOI:10.1021/pr200864j
*Butyrivibrio*fibrisolvens*							# Hespell et al. (1987) - Fermentation of Xylans by Butyrivibrio fibrisolvens and Other Ruminal Bacteria
*Selenomonas*ruminantium*							# Hespell et al. (1987) - Fermentation of Xylans by Butyrivibrio fibrisolvens and Other Ruminal Bacteria
*Bacteroides*ruminicola*							# Hespell et al. (1987) - Fermentation of Xylans by Butyrivibrio fibrisolvens and Other Ruminal Bacteria
*Bacteroides*succinogenes*							# Hespell et al. (1987) - Fermentation of Xylans by Butyrivibrio fibrisolvens and Other Ruminal Bacteria
*Ruminococcus*albus*								# Hespell et al. (1987) - Fermentation of Xylans by Butyrivibrio fibrisolvens and Other Ruminal Bacteria
*Ruminococcus*flavefaciens*							# Hespell et al. (1987) - Fermentation of Xylans by Butyrivibrio fibrisolvens and Other Ruminal Bacteria
*Pseudobutyrivibrio*xylanivorans*					# DOI:10.1099/ijs.0.02345-0
*Prevotella*bryantii*								# DOI:10.1006/anae.1997.0125
*Eubacterium*ruminantium*							# Cotta (1993). Utilization of Xylooligosaccharides by Selected Ruminal Bacteria
*Prevotella*ruminicola*								# Cotta (1993). Utilization of Xylooligosaccharides by Selected Ruminal Bacteria
*Ruminococcus*flavefaciens*							# van der Toorn et al. (1985). Xylan-digesting Bacteria from the Rumen of Sheep Fed Maize Straw Diets
*Eubacterium*xylanophilum*							# van der Toorn et al. (1985). Xylan-digesting Bacteria from the Rumen of Sheep Fed Maize Straw Diets
*Eubacterium*cellulosolvens*						# van der Toorn et al. (1985). Xylan-digesting Bacteria from the Rumen of Sheep Fed Maize Straw Diets
*Bacteroides*ruminicola*							# van der Toorn et al. (1985). Xylan-digesting Bacteria from the Rumen of Sheep Fed Maize Straw Diets
*Bacteroides*amylophilus*							# van der Toorn et al. (1985). Xylan-digesting Bacteria from the Rumen of Sheep Fed Maize Straw Diets
*Streptococcus*bovis*								# Goel et al. (2005). Xylanolytic activity of ruminal Streptococcus bovis in presence of tannic acid
*Fibrobacter*succinogenes*							# Matte and Forsberg (1992). Purification, characterization, and mode of action of endoxylanases 1 and 2 from Fibrobacter succinogenes S85
*Bacillus*subtilis*									# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Streptomyces*olivochromogenes*						# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermoactinomyces*vulgaris*						# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermoanaerobacter*saccharolyticum*				# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermonospora*fusca*								# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermotoga*maritima*								# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595  and  Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermotoga*neopolitana*							# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Thermococcus*zilligii*								# Le Gal (2005) - Marine Biotechnology I, ISBN: 9783540256595
*Neocallimastix*patriciarum*						# Béguin and Aubert (1994) - The biological degradation of cellulose
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Isoptericola*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Xylanimicrobium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Xylanibacterium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Xylanimonas*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gammaproteobacteria*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alteromonadaceae*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Bacillus*vedderi*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacterium*indicireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldrichii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*alkalicellulosi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lentocellum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*saccharolyticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*kristjanssonii*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*lactoaceticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*owensensis*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*acetigenus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agromyces*ulmi*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudomonas*mucidolens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Oxalobacteraceae*Telluria*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Melittangium*lichenicola*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Jahnia*thaxteri*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Sorangium*cellulosum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Bacillus*agaradhaerens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*vedderi*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermantarcticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Amphibacillus*xylanus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Amphibacillus*tropicus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*rupiensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*polymyxa*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*cellulosilyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*favisporus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*panacisoli*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*peoriae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*phyllosphaerae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*xylanilyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillaceae*Thermobacillus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacterium*indicireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Trichococcus*pasteurii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aerotolerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldrichii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*algidixylanolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*alkalicellulosi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*amygdalinum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulovorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lentocellum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*phytofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*proteoclasticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*stercorarium*thermolacticum*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*vincentii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*xylanolyticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caloramator*fervidus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*uniforme*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*xylanophilum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Butyrivibrio*fibrisolvens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Selenomonas*ruminantium*							# Cotta et al. (1995) - Degradation and utilization of xylan by the ruminal bacteria Butyrivibrio fibrisolvens and Selenomonas ruminantium
*Thermoanaerobacter*italicus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*mathranii*mathranii*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*thermocopriae*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*saccharolyticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*acetigenus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*kristjanssonii*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*lactoaceticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*owensensis*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*thermosulfurigenes*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*aciditolerans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*aotearoense*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*saccharolyticum*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*thermosaccharolyticum*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*zeae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacteroides*xylanolyticus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Alkaliflexus*imshenetskii*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophaga*xylanolytica*							# Haak et al. (1993) - Cytophaga xylanolytica sp. nov., a xylan-degrading, anaerobic gliding bacterium
*Prevotella*bryantii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*ruminicola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*veroralis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotellaceae*Xylanibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*frigidarium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Persicivirga*xylanidelens*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rhodothermus*marinus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Acidobacterium*capsulatum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dictyoglomus*thermophiilum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dictyoglomus*turgidum*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dictyoglomus*Rt46-B1*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Opitutus*terrae*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Schlesneria*paludicola*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Singulisphaera*acidiphila*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Actinopolyspora*mortivallis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Bifidobacterium*saeculare*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*xylanilytica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*paludicola*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*ulmi*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*xylanilyticum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agromyces ulmi*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*paludicola*							# Park et al. (2006) - Microbacterium paludicola sp. nov., a novel xylanolytic bacterium isolated from swamp forest
*Micromonospora*lupini*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*mirobrigensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*rosaria*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*saelicesensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinoplanes*couchii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioides*dokdonensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*orientalis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*azurea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*coloradensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*eurytherma*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*japonica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*lurida*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*regifaucium*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*plumensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*lactamdurans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharomonospora*viridis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*antimicrobica*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*flava*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*thermophila*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*javensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*mexicanus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*niger*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*speibonae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*thermoalcalitolerans*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*thermocoprophilus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microtetraspora*glauca*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermopolyspora*flexuosa*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermobifida*fusca*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermobifida*alba*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonospora*curvata*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonospora*chromogena*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocorallia*libanotica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomadura*rudentiformis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rubrobacter*xylanophilus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Crenarchaeota*Thermosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermotoga*hypogea*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Petrotoga*mobilis*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Herbiconiux*moechotypicola*						# DOI:10.1099/ijs.0.028357-0










dark_sulfide_oxidation			elements:S; main_element:S; electron_donor:S; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Thiosphaera*pantotropha*							# DOI:10.1099/00221287-129-9-2847  and  Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Paracoccus*pantotrophus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Thiobacillus*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiomicrospira*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermothrix*thiopara*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Dechloromonas*agitata*								# DOI:10.1099/00207713-51-2-527
*Thiohalomonas*denitrificans*						# DOI:10.1099/ijs.0.65112-0
*Thiobacillus*tepidarius*							# DOI:10.1099/00207713-35-4-434
*Thiomonas*WZW*										# DOI:10.1007/s00253-006-0663-4
*Hydrogenophaga*CL-3*								# DOI:10.1111/j.1574-6941.2008.00569.x
*Thiobacillus*S-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Ancylobacter*OL-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Alicyclobacillus*tolerans*							# DOI:10.1099/ijs.0.63300-0
*Thiobacillus*caldus*								# DOI:10.1099/13500872-140-12-3451
*Deltaproteobacteria*MLMS-1*						# DOI:10.1128/AEM.70.5.2741-2747.2004
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Thiobacillus*denitrificans*						# DOI:10.1002/bit.260290216
*Halothiobacillus*HT1*								# Shi, Lin, Yuan & Zhao (2011) - Isolation and characterization of a novel sulfuroxidizing chemolithoautotroph Halothiobacillus from Pb polluted paddy soil
*Sulfurimonas*gotlandica*							# DOI:10.1073/pnas.1111262109
*Thialkalivibrio*nitratireducens*					# DOI:10.1099/ijs.0.02615-0
*Thialkalivibrio*halophilus*						# DOI:10.1007/s00792-004-0391-6
*Sulfurimonas*hongkongensis*						# DOI:10.4056/sigs.4948668
*Thialkalivibrio*versutus*D301*						# DOI:10.1007/s10529-015-1845-x
*Thiogranum*longum*									# DOI:10.1099/ijs.0.070599-0
*Arcobacter*sulfidicus*								# DOI:10.1128/AEM.68.1.316–325.2002
*Thermithiobacillus*tepidarius*						# DOI:10.1099/00207713-50-2-511  and  Wood and Kelly (1986). Chemolithotrophic metabolism of the newly-isolated moderately thermophilic, obligately autotrophic Thiobacillus tepidarius
*Allochromatium*vinosum*							# DOI:10.1128/AEM.67.7.2873–2882.2001
*Chlorobaculum*tepidum*								# DOI:10.1128/AEM.67.7.2873–2882.2001
*Paracoccus*denitrificans*							# DOI:10.1128/AEM.67.7.2873–2882.2001
*Rhodobacter*capsulatus*							# DOI:10.1128/AEM.67.7.2873–2882.2001
*SUP05*												# DOI:10.1126/science.1175309  and  DOI:10.1073/pnas.1322132111  and  DOI:10.1038/ismej.2012.78
*Arctic96BD-19*										# DOI:10.1126/science.1175309  and  DOI:10.1073/pnas.1322132111  and  DOI:10.1038/ismej.2012.78
*Thiovulum*majus*									# DOI:10.1099/13500872-140-11-3109
*Alcaligenes*faecalis*								# DOI:10.1016/j.ibiod.2010.04.005
*Acinetobacter*MU1_03*								# DOI:10.1016/j.ibiod.2010.04.005
*Alcaligenes*faecalis*MU2_03*						# DOI:10.1016/j.ibiod.2010.04.005
*Xanthomonas*DY44*									# Cho (1992). Degradation of hydrogen sulfide by Xanthomonas sp. strain DY44 isolated from peat
*Thermothrix*azorensis*								# Odintsova et al (1996). Thermothrix azorensis sp. nov., an obligately chemolithoautotrophic, sulfur-oxidizing, thermophilic bacterium
*Sulfolobus*tokodaii*								# Kawarabayasi (2001). Complete Genome Sequence of an Aerobic Thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7
*Sulfolobus*solfataricus*							# DOI:10.1128/AEM.67.7.2873–2882.2001
*Acidianus*ambivalens*								# DOI:10.1128/AEM.67.7.2873–2882.2001
*Acidianus*sulfidivorans*							# DOI:10.1099/ijs.0.64846-0
*Paracoccus*bengalensis*							# DOI:10.1016/j.syapm.2005.10.004
*Thiosphaera*pantotropha*							# Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Paracoccus*pantotropha*							# Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Rhodopseudomonas*palustris*						# Rodova and Pedan (1980) - Thiosulfate metabolism in Rhodopseudomonas palustris
*Gammaproteobacteria*Thiomargarita*					# Munn (2011) - Marine Microbiology, chapter 4
*Thiotrichaceae*Thiomargarita*						# Munn (2011) - Marine Microbiology, chapter 4. Legacy taxonomy
*Gammaproteobacteria*Thioploca*						# Munn (2011) - Marine Microbiology, chapter 4  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiotrichaceae*Thioploca*							# Munn (2011) - Marine Microbiology, chapter 4  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Thiotrichaceae*Thiothrix*							# Munn (2011) - Marine Microbiology, chapter 4
*Halothiobacillaceae*Halothiobacillus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Thiomicrospiraceae*Thiomicrospira*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Piscirickettsiaceae*Thiomicrospira*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria. Legacy taxonomy
*Hydrogenophilaceae*Thiobacillus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospiraceae*Thioalkalivibrio*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiomicrospiraceae*Thioalkalimicrobium*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Thioalkalimicrobium*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Thiomicrospira*denitrificans*						# DOI:10.1128/AEM.72.2.1364-1372.2006
*Sulfurimonas*denitrificans*						# DOI:10.1128/AEM.72.2.1364-1372.2006  and  DOI:10.1099/ijs.0.64255-0  and  DOI:10.1016/0077-7579(75)90008-3
*Thiomicrospira*denitrificans*						# DOI:10.1128/AEM.72.2.1364-1372.2006  and  DOI:10.1099/ijs.0.64255-0  and  DOI:10.1016/0077-7579(75)90008-3
*Archaeoglobaceae*Ferroglobus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Arcobacter*sulfidicus*								# DOI:10.1128/AEM.68.1.316-325.2002
*Sulfolobaceae*Sulfolobus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thiomicrospira*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermothrix*azorensis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Betaproteobacteriales*Thiomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Thiomonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Thioalkalimicrobium*microaerophilum*				# DOI:10.1128/AEM.02087-06
*Thioalbus*denitrificans*							# DOI:10.1099/ijs.0.024844-0
*Rhodovulum*tesquicola*								# DOI:10.1099/ijs.0.035857-0
*Azoarcus*taiwanensis*								# DOI:10.1007/s00253-013-4976-9
*Sulfurovum*NBC37-1*								# DOI:10.1073/pnas.0700687104
*Nitratiruptor*SB155-2*								# DOI:10.1073/pnas.0700687104
*Sulfurimonas*hongkongensis*						# DOI:10.3389/fmicb.2015.00989
*Sulfurimonas*gotlandica*							# DOI:10.3389/fmicb.2015.00989
*Sulfuricurvum*kujiense*							# DOI:10.4056/sigs.2456004
*Proteobacteria*Magnetovibrio*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodospirillaceae*Magnetovibrio*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy



dark_sulfur_oxidation			elements:S; main_element:S; electron_donor:S; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# elementar sulfur oxidizers, non-photosynthetic
# (dissimilatory, for energy)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Sulfurovum*riftiae*								# DOI:10.1099/ijsem.0.001106
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Sulfurimonas*autotrophica*							# DOI:10.1099/ijs.0.64255-0
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Paracoccus*versutus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Thiobacillus*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermothrix*thiopara*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquifex*pyrophilus*								# Huber et al (1992) - Aquifex pyrophilus gen. nov. sp. nov., Represents a Novel Group of Marine Hyperthermophilic Hydrogen-Oxidizing Bacteria
*Aquificales*THS-11*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*THS-13*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*THS-25*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*TS-63*									# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*TS-17*									# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Thiobacillus*perometaboli*							# DOI:10.1007/BF00406335
*Burkholderia*kururiensis*thiooxydans*				# DOI:10.1007/s00203-009-0517-4
*Dyella*thiooxydans*								# DOI:10.1099/ijs.0.022012-0
*Thiobacillus*tepidarius*							# DOI:10.1099/00207713-35-4-434
*Thiomonas*arsenivorans*							# DOI:10.1007/s10482-005-9013-2
*Acidicaldus*organivorus*							# DOI:10.1007/s00203-006-0087-7
*Hydrogenophaga*CL-3*								# DOI:10.1111/j.1574-6941.2008.00569.x
*Thiobacillus*S-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Ancylobacter*OL-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Sulfobacillus*disulfidooxidans*					# DOI:10.1099/00207713-46-4-1056
*Alicyclobacillus*disulfidooxidans*					# DOI:10.1099/00207713-46-4-1056  and  DOI:10.1099/ijs.0.63300-0
*Alicyclobacillus*tolerans*							# DOI:10.1099/ijs.0.63300-0
*Thiobacillus*caldus*								# DOI:10.1099/13500872-140-12-3451
*Sulfolobus*acidocaldarius*							# DOI:10.1002/bit.260260709
*Thiobacillus*thiooxidans*							# Kodama and Mori (1968) - Studies on the metabolism of a sulfur-oxidizing bacterium V. Comparative studies on sulfur and sulfite oxidizing systems of Thiobacillus thiooxidans
*Halothiobacillus*HT1*								# Shi, Lin, Yuan & Zhao (2011) - Isolation and characterization of a novel sulfuroxidizing chemolithoautotroph Halothiobacillus from Pb polluted paddy soil
*Sulfurifustis*variabilis*							# DOI:10.1099/ijsem.0.000479
*Acidianus*manzaensis*								# DOI:10.1007/s00284-006-0151-1
*Thioprofundum*hispidum*							# DOI:10.1099/ijs.0.026963-0
*Thialkalivibrio*nitratireducens*					# DOI:10.1099/ijs.0.02615-0
*Thialkalivibrio*halophilus*						# DOI:10.1007/s00792-004-0391-6
*Thiolapillus*brandeum*								# DOI:10.1371/journal.pone.0104959
*Thiogranum*longum*									# DOI:10.1099/ijs.0.070599-0
*Sulfurovum*lithotrophicum*							# DOI:10.1099/ijs.0.03042-0
*Sulfurihydrogenibium*kristjanssonii*				# DOI:10.1099/ijs.0.65570-0
*Sulfurihydrogenibium*yellowstonense*				# DOI:10.1099/ijs.0.63708-0
*Aquifex*ambivalens*								# DOI:10.1128/AEM.67.7.2873–2882.2001
*Acidithiobacillus*ferrooxidans*					# DOI:10.1042/BJ20040003
*Acidithiobacillus*thiooxidans*						# DOI:10.1042/BJ20040003  and  Kelly and Wood (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
*Paracoccus*bengalensis*							# DOI:10.1016/j.syapm.2005.10.004
*Thiomicrospiraceae*Thiomicrospira*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Piscirickettsiaceae*Thiomicrospira*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria. Legacy taxonomy
*Rhodobacteraceae*Sulfitobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospiraceae*Thioalkalivibrio*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hydrogenovibrio*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurimonas*autotrophica*							# DOI:10.1099/ijs.0.64255-0
*Crenarchaeota*Desulfurococcales*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Carboxydothermus*ferrireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acidiphilium*acidophilum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfolobaceae*Sulfolobus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfolobaceae*Acidianus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfolobaceae*Metallosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfolobaceae*SulfurococcuS*						# DOI:10.1099/00207713-41-4-495  and  Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thioglobus*singularis*								# DOI:10.1038/ismej.2012.78
*Thiobacillus*thiooxidans*							# Waksman and Joffe (1922). Thiobacillus Thiooxidans, a New Sulfur-oxidizing Organism Isolated from the Soil
*Starkeya*novella*									# DOI:10.3389/fmicb.2013.00304
*Thermothrix*azorensis*								# Odintsova et al (1996). Thermothrix azorensis sp. nov., an obligately chemolithoautotrophic, sulfur-oxidizing, thermophilic bacterium
*Acidianus*sulfidivorans*							# DOI:10.1099/ijs.0.64846-0
*Halothiobacillaceae*Halothiobacillus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidithiobacillus*thiooxidans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermothrix*azorensis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Betaproteobacteriales*Thiomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Thiomonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Hydrogenovibrio*marinus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitratiruptor*SB155-2*								# DOI:10.1128/AEM.01844-07
*Sulfuricella*denitrifican*							# DOI:10.1099/ijs.0.016980-0
*Thioalbus*denitrificans*							# DOI:10.1099/ijs.0.024844-0
*Rhodovulum*tesquicola*								# DOI:10.1099/ijs.0.035857-0
*Thioalkalivibrio*sulfidiphilus*					# DOI:10.1099/ijs.0.034504-0
*Sulfuricella*denitrificans*						# DOI:10.1099/ijs.0.016980-0
*Sulfuritalea*hydrogenivorans*						# DOI:10.1099/ijs.0.024968-0
*Sulfuricella*T08*									# DOI:10.1128/genomeA.00498-15
*Sulfuriferula*multivorans*							# DOI:10.1099/ijs.0.000129
*Sulfurovum*lithotrophicum*							# DOI:10.1099/ijs.0.03042-0
*Sulfurovum*NBC37-1*								# DOI:10.1073/pnas.0700687104
*Nitratiruptor*SB155-2*								# DOI:10.1073/pnas.0700687104
*Sulfurimonas*paralvinellae*						# DOI:10.3389/fmicb.2015.00989
*Sulfurimonas*gotlandica*							# DOI:10.3389/fmicb.2015.00989
*Sulfuricurvum*kujiense*							# DOI:10.4056/sigs.2456004
*Acidithiomicrobium*sp.*P1*							# DOI:10.4028/www.scientific.net/AMR.71-73.271  and  Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Acidithiomicrobium*sp.*P2*							# DOI:10.4028/www.scientific.net/AMR.71-73.271  and  Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Sulfurihydrogenibium*subterraneum*					# DOI:10.1099/ijs.0.02506-0
*Sulfurihydrogenibium*azorense*						# DOI:10.1099/ijs.0.02790-0



dark_thiosulfate_oxidation			elements:S; main_element:S; electron_donor:S; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# (dissimilatory, for energy)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Sulfurovum*riftiae*								# DOI:10.1099/ijsem.0.001106
*Burkholderia*insulsa*								# DOI:10.1099/ijs.0.064477-0
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Sulfurimonas*autotrophica*							# DOI:10.1099/ijs.0.64255-0
*Sulfurimonas*paralvinellae*						# DOI:10.1099/ijs.0.64255-0
*Thiosphaera*pantotropha*							# DOI:10.1099/00221287-129-9-2847  and  Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Paracoccus*thicyanatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*pantotrophus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracoccus*aminovorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*thicyanatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*solventivorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Thiobacillus*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiomicrospira*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermothrix*thiopara*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiohalomonas*nitratireducens*						# DOI:10.1099/ijs.0.65112-0
*Thiohalomonas*denitrificans*						# DOI:10.1099/ijs.0.65112-0
*Azoarcus*taiwanensis*								# DOI:10.1007/s00253-013-4976-9
*Pseudomonas*16B*									# Tuttle (1980) - Thiosulfate Oxidation and Tetrathionate Reduction by Intact Cells of Marine Pseudomonad Strain 16B
*Thiobacillus*intermedius*							# DOI:10.1007/BF00276471
*Thiobacillus*versutus*								# DOI:10.1007/BF00276471
*Aquifex*pyrophilus*								# Huber et al (1992) - Aquifex pyrophilus gen. nov. sp. nov., Represents a Novel Group of Marine Hyperthermophilic Hydrogen-Oxidizing Bacteria
*Aquificales*THS-11*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*THS-13*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*THS-25*								# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*TS-63*									# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Aquificales*TS-17*									# Beffa, Blanc et al (1996) - Obligately and facultatively autotrophic, sulfur- and hydrogen-oxidizing thermophilic bacteria isolated from hot composts
*Thiobacillus*perometaboli*							# DOI:10.1007/BF00406335
*Burkholderia*kururiensis*thiooxydans*				# DOI:10.1007/s00203-009-0517-4
*Methylobacterium*goesingense*						# Anandham et al (2009) - Thiosulfate Oxidation and Mixotrophic Growth of Methylobacterium goesingense and Methylobacterium fujisawaense
*Methylobacterium*fujisawaense*						# Anandham et al (2009) - Thiosulfate Oxidation and Mixotrophic Growth of Methylobacterium goesingense and Methylobacterium fujisawaense
*Dyella*thiooxydans*								# DOI:10.1099/ijs.0.022012-0
*Thiobacillus*tepidarius*							# DOI:10.1099/00207713-35-4-434
*Bacillus*thioparus*								# DOI:10.1111/j.1574-6968.2007.00729.x
*Thiomonas*bhubaneswarensis*						# DOI:10.1099/ijs.0.007120-0
*Sulfurivirga*caldicuralii*							# DOI:10.1099/ijs.0.64297-0
*Klebsiella*aerogenes*								# DOI:10.1007/BF02011707
*Bacillus*globigii*									# DOI:10.1007/BF02011707
*Bacillus*megaterium*								# DOI:10.1007/BF02011707
*Pseudomonas*putida*								# DOI:10.1007/BF02011707
*Pseudomonas*fluorescens*							# DOI:10.1007/BF02011707
*Pseudomonas*aeruginosa*							# DOI:10.1007/BF02011707
*Thiobacillus*thiophilus*							# DOI:10.1099/ijs.0.002808-0
*Starkeya*novella*									# DOI:10.1007/s002030000241  and  Taylor et al (1969) - New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus
*Thiobacillus*novellus*								# DOI:10.1007/s002030000241  and  Taylor et al (1969) - New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus
*Thiobacillus*A2*									# DOI:10.1007/BF00421888
*Betaproteobacteria*RBS3-61*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP2-22*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP1-23*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP2-32*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP3-32*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP2-8*							# DOI:10.1078/072320203322497482
*Betaproteobacteria*RBS3-89*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP-E3*							# DOI:10.1078/072320203322497482
*Betaproteobacteria*RBS4-49*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RBS5-52*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RBS4-66*						# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP-E5*							# DOI:10.1078/072320203322497482
*Betaproteobacteria*RRP-E61*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RBS3-62*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RRP3-6*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RRP-E1*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RRP-E2*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RBS3-84*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RBS4-86*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RBS4-92*						# DOI:10.1078/072320203322497482
*Alphaproteobacteria*RRP-E4*						# DOI:10.1078/072320203322497482
*Thiobacillus*thioparus*							# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Bosea*5Z-2111*										# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Xanthobacter*TV6-2B*								# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Xanthobacter*Z2A-6A*								# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Xanthobacter*Z4A-2A*								# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Ancylobacter*aquaticus*							# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Thiomonas*WZW*										# DOI:10.1007/s00253-006-0663-4
*Thiomonas*SS*										# DOI:10.1111/j.1472-765X.2004.01615.x
*Thiomonas*arsenivorans*							# DOI:10.1007/s10482-005-9013-2
*Hydrogenophaga*CL-3*								# DOI:10.1111/j.1574-6941.2008.00569.x
*Thiobacillus*S-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Ancylobacter*OL-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Thiobacillus*caldus*								# DOI:10.1099/13500872-140-12-3451
*Rhodanobacter*thiooxydans*							# DOI:10.1099/ijs.0.65086-0
*Halothiobacillus*HT1*								# Shi, Lin, Yuan & Zhao (2011) - Isolation and characterization of a novel sulfuroxidizing chemolithoautotroph Halothiobacillus from Pb polluted paddy soil
*Sulfurifustis*variabilis*							# DOI:10.1099/ijsem.0.000479
*Thiomonas*islandica*								# DOI:10.1099/ijs.0.015511-0
*Thioprofundum*hispidum*							# DOI:10.1099/ijs.0.026963-0
*Thialkalivibrio*nitratireducens*					# DOI:10.1099/ijs.0.02615-0
*Thialkalivibrio*halophilus*						# DOI:10.1007/s00792-004-0391-6
*Sulfurimonas*hongkongensis*						# DOI:10.4056/sigs.4948668
*Thioglobus*singularis*								# DOI:10.1038/ismej.2012.78
*Pseudaminobacter*salicylatoxidans*					# DOI:10.1128/JB.00944-12
*Thiolapillus*brandeum*								# DOI:10.1371/journal.pone.0104959
*Thiogranum*longum*									# DOI:10.1099/ijs.0.070599-0
*Sulfurovum*lithotrophicum*							# DOI:10.1099/ijs.0.03042-0
*Sulfurihydrogenibium*kristjanssonii*				# DOI:10.1099/ijs.0.65570-0
*Sulfurihydrogenibium*yellowstonense*				# DOI:10.1099/ijs.0.63708-0
*Pyrobaculum*aerophilum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Crenarchaeota*Thermocladium*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Ectothiorhodospiraceae*Thioalkalivibrio*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidiphilium*acidophilum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquificales*Hydrogenobacter*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Acidithiobacillus*thiooxidans*						# DOI:10.1042/BJ20040003  and  Kelly and Wood (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
*Thermithiobacillus*tepidarius*						# DOI:10.1099/00207713-50-2-511  and  Wood and Kelly (1986). Chemolithotrophic metabolism of the newly-isolated moderately thermophilic, obligately autotrophic Thiobacillus tepidarius
*Thermothrix*azorensis*								# Odintsova et al (1996). Thermothrix azorensis sp. nov., an obligately chemolithoautotrophic, sulfur-oxidizing, thermophilic bacterium
*Meiothermus*cerbereus*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Meiothermus*ruber*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halothiobacillaceae*Halothiobacillus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidithiobacillus*thiooxidans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiomicrospira*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermothrix*azorensis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Betaproteobacteriales*Thiomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Thiomonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Catenococcus*thiocycli*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hydrogenovibrio*marinus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thioalkalimicrobium*microaerophilum*				# DOI:10.1128/AEM.02087-06
*Sulfuricella*denitrifican*							# DOI:10.1099/ijs.0.016980-0
*Thioalbus*denitrificans*							# DOI:10.1099/ijs.0.024844-0
*Rhodovulum*tesquicola*								# DOI:10.1099/ijs.0.035857-0
*Thioalkalivibrio*nitratireducens*					# DOI:10.1016/j.biochi.2012.07.004
*Sulfuricella*denitrificans*						# DOI:10.1099/ijs.0.016980-0
*Sulfuritalea*hydrogenivorans*						# DOI:10.1099/ijs.0.024968-0
*Sulfuriferula*multivorans*							# DOI:10.1099/ijs.0.000129
*Sulfurovum*lithotrophicum*							# DOI:10.1099/ijs.0.03042-0
*Sulfurovum*NBC37-1*								# DOI:10.1073/pnas.0700687104
*Nitratiruptor*SB155-2*								# DOI:10.1073/pnas.0700687104
*Sulfurimonas*hongkongensis*						# DOI:10.3389/fmicb.2015.00989
*Sulfurimonas*paralvinellae*						# DOI:10.3389/fmicb.2015.00989
*Sulfurimonas*gotlandica*							# DOI:10.3389/fmicb.2015.00989
*Sulfuricurvum*kujiense*							# DOI:10.4056/sigs.2456004
*Thiobios*ODIII6*									# 10.1128/AEM.72.3.2014–2021.2006
*Tumebacillus*permanentifrigoris*					# DOI:10.1099/ijs.0.65101-0
*Tumebacillus*flagellatus*							# DOI:10.1099/ijs.0.045351-0
*Elioraea*tepidiphila*								# DOI:10.1099/ijs.0.65294-0
*Magnetospiraceae*Magnetospira*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodospirillaceae*Magnetospira*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy
*Proteobacteria*Magnetovibrio*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodospirillaceae*Magnetovibrio*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy
*Salinisphaera*hydrothermalis*						# DOI:10.1099/ijs.0.005058-0
*Rhodobacteraceae*Citreicella*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Citreicella*marina*								# DOI:10.1099/ijs.0.022376-0
*Tateyamaria*pelophila*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Limnobacter*thiooxidans*							# DOI:10.1099/00207713-51-4-1463
*Limnobacter*litoralis*								# DOI:10.1099/ijs.0.020206-0
*Thiohalobacter*thiocyanaticus*						# DOI:10.1099/ijs.0.012880-0
*Sulfurihydrogenibium*subterraneum*					# DOI:10.1099/ijs.0.02506-0
*Sulfurihydrogenibium*azorense*						# DOI:10.1099/ijs.0.02790-0





dark_oxidation_of_sulfur_compounds			elements:S; main_element:S; electron_donor:S; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# (dissimilatory, for energy)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:dark_sulfide_oxidation
add_group:dark_sulfur_oxidation
add_group:dark_thiosulfate_oxidation
*Hydrogenophilaceae*Thiobacillus*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Proteobacteria*Acidithiobacillus*					# Kelly and Wood (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
*Proteobacteria*Halothiobacillus*					# Kelly and Wood (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
*Proteobacteria*Thermithiobacillus*					# Kelly and Wood (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
*Hydrogenophilaceae*Thiobacillus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiosphaera*pantotropha*							# DOI:10.1016/S0141-0229(97)00070-7
*Hydrogenobacter*acidophilus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Beggiatoaceae*Beggiatoa*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiotrichaceae*Beggiatoa*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Acidiphilium*acidophilum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Bosea*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Bosea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Tepidimonas*ignava*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiovulaceae*Sulfurimonas*							# DOI:10.3389/fmicb.2015.00989
*Helicobacteraceae*Sulfurimonas*					# DOI:10.3389/fmicb.2015.00989 . Legacy taxonomy
*Thioclava*pacifica*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria






manganese_oxidation			elements:Mn; main_element:Mn; electron_donor:Mn; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Oceanisphaera*donghaensis*							# DOI:10.1099/ijs.0.64116-0
*Shewanella*loihica*								# DOI:10.1099/ijs.0.64354-0
*Bacteria*SSW-22*									# Ehrlich (1983) - Manganese-Oxidizing Bacteria from a Hydrothermally Active Area on the Galapagos Rift
*Aurantimonas*SI85-9A1*								# DOI:10.1128/AEM.01656-07
*Aurantimonas*manganoxydans*						# DOI:10.1080/01490450902724840
*Aurantimonas*litoralis*							# DOI:10.1080/01490450902724840
*Alvinella*AE01*									# DOI:10.1080/01490450902724840
*Fulvomarina*pelagi*								# DOI:10.1080/01490450902724840
*Sulfidobacter*sp.*SPB-2*							# DOI:10.1080/01490450902724840
*Roseobacter*sp.*AzwK-3b*							# DOI:10.1080/01490450902724840
*Methylarcula*sp.*SPB-6*							# DOI:10.1080/01490450902724840
*Rhodobacter*sp.*CR07-8*							# DOI:10.1080/01490450902724840
*Erythrobacter*sp.*SD-21*							# DOI:10.1080/01490450902724840
*Pedomicrobium*sp.*ACM 3067*						# DOI:10.1080/01490450902724840
*Phanerochaete*chrysosporium*						# DOI:10.1016/0003-9861(86)90378-4
*Bacillus*pumilus*WH4*								# DOI:10.1371/journal.pone.0060573
*Bacillus*MB-1*										# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*MB-3*										# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*MB-5*										# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*MB-7*										# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*MB-9*										# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*MB-12*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*PL-7*										# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*PL-12*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*PL-16*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*PL-21*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*PL-26*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*PL-30*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*SD-18*									# DOI:10.1128/AEM.68.2.874-880.2002
*Bacillus*sp.*SG-1*									# DOI:10.1128/AEM.68.2.874-880.2002
*Leptothrix*discophora*								# DOI:10.1016/j.soilbio.2007.01.004  and  Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Herbaspirillum*seropedicae*						# DOI:10.1016/j.soilbio.2007.01.004
*Pseudomonas*putida*								# DOI:10.1016/j.soilbio.2007.01.004
*Acinetobacter*lwoffii*								# DOI:10.1016/j.soilbio.2007.01.004
*Bosea*thiooxidans*									# DOI:10.1016/j.soilbio.2007.01.004
*Propionibacterium*acnes*							# DOI:10.1016/j.soilbio.2007.01.004
*Facklamia*languida*								# DOI:10.1016/j.soilbio.2007.01.004
*Bacillales*bacterium*								# DOI:10.1016/j.soilbio.2007.01.004
*Bacterium*Ellin515*								# DOI:10.1016/j.soilbio.2007.01.004
*Aurantimonas*litoralis*							# DOI:10.1080/01490450902724840
*Geodermatophilaceae*Geodermatophilus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Caldimonas*manganoxidans*							# Takeda et al. (2002) - Caldimonas manganoxidans gen. nov., sp. nov., a poly(3-hydroxybuty- rate)-degrading, manganese-oxidizing thermophile
*Proteobacteria*Leptothrix*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Leptothrix*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Arthrobacter*globiformis*							# DOI:10.1016/j.tim.2005.07.009
*Arthrobacter*crystallopoietes*						# DOI:10.1016/j.tim.2005.07.009
*Pedomicrobium*manganicum*							# DOI:10.1016/j.tim.2005.07.009
*Erythrobacter*SD-21*								# DOI:10.1016/j.tim.2005.07.009
*Caldimonas*manganoxidans*							# DOI:10.1016/j.tim.2005.07.009
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Bacillus*rigiliprofundi*							# DOI:10.1099/ijs.0.000211



manganese_respiration			elements:Mn; main_element:Mn; electron_donor:variable; electron_acceptor:Mn; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Tepidibacillus*decaturensis*						# DOI:10.1099/ijsem.0.001295
*Desulfotomaculum*reducens*							# DOI:10.1099/ijsem.0.000786
*Orenia*metallireducens*							# DOI:10.1128/AEM.02382-16
*Geobacteraceae*Geoalkalibacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Geoalkalibacter*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria. Legacy taxonomy
*Desulfuromonas*acetoxidans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*acetexigens*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*palmitatis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*svalbardensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Rhodoferax*ferrireducens*							# DOI:10.1099/ijs.0.02298-0
*Ferrimonas*futtsuensis*							# DOI:10.1099/ijs.0.64399-0
*Shewanella*amazonensis*							# DOI:10.1099/00207713-48-3-965
*Georgfuchsia*toluolica*							# DOI:10.1111/j.1574-6941.2009.00778.x
*Geobacteraceae*Dfrl*								# DOI:10.1016/S0723-2020(98)80054-4
*Geobacteraceae*Dfr2*								# DOI:10.1016/S0723-2020(98)80054-4
*Thermoanaerobaculum*aquaticum*						# DOI:10.1099/ijs.0.051425-0
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Shewanella*O23S*									# DOI:10.3390/ijms160714409
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*hafniense*DCB-2*				# DOI:10.1186/1471-2180-12-21
*Bacillus*subterraneus*								# Kanso et al. (2002) - Bacillus subterraneus sp. nov., an iron- and manganese-reducing bacterium from a deep subsurface Australian thermal aquifer
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*putrefaciens*							# Myers et al. (1993) - Role of menaquinone in the reduction of fumarate, nitrate, iron(III) and manganese(IV) by Shewanella putrefaciens 
*Bacillus*subterraneus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Deferribacteraceae*Deferribacter*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Bacillus*subterraneus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*chlororespirans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*metallireducens*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Geothrix*fermentans*								# DOI:10.1099/00207713-49-4-1615  and  Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fervidicella*metallireducens*						# DOI:10.1099/ijs.0.014670-0
*Thermovenabulum*gondwanense*						# DOI:10.1099/ijs.0.009886-0
*Ferrimonas*balearica*								# DOI:10.4056/sigs.1161239
*Geoalkalibacter*subterraneus*						# DOI:10.1099/ijs.0.001537-0
*Deferribacter*autotrophicus*						# DOI:10.1099/ijs.0.006767-0
*Albidiferax*ferrireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Geobacter*argillaceus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*bemidjiensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*bremensis*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*chapellei*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*lovleyi*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*metallireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*pelophilus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*pickeringii*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*uraniireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Deferribacter*autotrophicus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Deferribacter*thermophilus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea			
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341



ligninolysis			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Thermomonospora*mesophila*							# DOI:10.1099/00221287-130-11-2905
*Phanerochaete*chrysosporium*						# Pribnow et al. (1989) - Characterization of a cDNA encoding a manganese peroxidase, from the lignin-degrading basidiomycete Phanerochaete chrysosporium
*Streptomyces*viridosporus							# DOI:10.1016/j.cbpa.2013.11.015
*Streptomyces*setonii*								# DOI:10.1016/j.cbpa.2013.11.015
*Streptomyces*griseus*								# DOI:10.1016/j.cbpa.2013.11.015
*Bacillus*atrophaeus*								# DOI:10.1002/bit.24833
*Bacillus*pumilus*									# DOI:10.1002/bit.24833
*Bacillus*subtilis*									# DOI:10.1007/s11515-008-0097-8
*Sphingomonas*paucimobilis*							# DOI:10.1039/C1NP00042J
*Rhodococcus*jostii*								# DOI:10.1039/C1NP00042J
*Pseudomonas*putida*								# DOI:10.1039/C1NP00042J
*Aneurinibacillus*aneurinilyticus*					# DOI:10.1039/C1NP00042J  and  DOI:10.1002/jctb.1683
*Klebsiella*BRL6-2*									# DOI:10.1186/1944-3277-9-19
*Raoultella*ornithinolytica*						# DOI:10.1128/genomeA.00104-15
*Dictyoglomus*turgidum*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rhodobacteraceae*Sagittula*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptomyces*coelicolor*							# DOI:10.1016/j.copbio.2010.10.009
*Rhodococcus*jostii*RHA1*							# DOI:10.1016/j.copbio.2010.10.009
*Rhodococcus*erythropolis*							# DOI:10.1016/j.copbio.2010.10.009
*Nocardia*autotrophica*								# DOI:10.1016/j.copbio.2010.10.009
*Arthrobacter*globiformis*							# DOI:10.1016/j.copbio.2010.10.009
*Sphingobium*SYK-6*									# DOI:10.1016/j.copbio.2010.10.009
*Pseudomonas*putida*MT-2*							# DOI:10.1016/j.copbio.2010.10.009
*Sagittula*stellata*								# DOI:10.1099/00207713-47-3-773
*Pseudomonas*acidovorans*							# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*cepacia*								# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*cruciviae*								# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*fluorescens*							# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*multivorans*							# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*ovalis*								# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*paucimobilis*							# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Pseudomonas*pseudoalcaligenes*						# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Streptomyces*badius*								# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Streptomyces*cyaneus*								# Zimmermann (1990) - Degradation of lignin by bacteria, Journal of Biotechnology 13:119-130
*Rhodococcus*erythropolis*							# DOI:10.1111/j.1365-2672.2012.05352.x
*Comamonas*B-9*										# DOI:10.1111/j.1365-2672.2012.05275.x
*Bacillus*CS-1*										# DOI:10.1016/j.biortech.2013.11.032
*Bacillus*CS-2*										# DOI:10.1016/j.biortech.2013.11.032
*Ochrobactrum*LMG-20564*							# DOI:10.1111/j.1365-2672.2012.05352.x
*Ochrobactrum*anthropi*								# DOI:10.1111/j.1365-2672.2012.05352.x
*Micrococcus*luteus*								# DOI:10.1111/j.1365-2672.2012.05352.x
*Microbacterium*phyllosphaerae*						# DOI:10.1111/j.1365-2672.2012.05352.x
*Microbacterium*oxydans*							# DOI:10.1111/j.1365-2672.2012.05352.x
*Microbacterium*marinilacus*						# DOI:10.1111/j.1365-2672.2012.05352.x
*Mycolatopsis*ATC-39116*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Thermomonospora*mesophila*							# DOI:10.1007/BF00257062
*Enterobacter*soli*									# DOI:10.1007/s00284-010-9809-9




fermentation			elements:C; main_element:C; electron_donor:C; electron_acceptor:none; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfotomaculum*aquiferis*						# DOI:10.1099/ijsem.0.001352
*Desulfotomaculum*profundi*							# DOI:10.1099/ijsem.0.001352
*Tepidibacillus*decaturensis*						# DOI:10.1099/ijsem.0.001295
*Dethiosulfatarculus*sandiegensis*					# DOI:10.1099/ijsem.0.000864
*Desulfobulbus*aggregans*							# DOI:10.1007/s00284-017-1211-4
*Orenia*metallireducens*							# DOI:10.1128/AEM.02382-16
*Herbivorax*saccincola*								# DOI:10.1099/ijsem.0.001374
*Pyrodictiaceae*Hyperthermus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Thermosphaera*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Sulfophobococcus*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Desulfurococcus*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Staphylothermus*				# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Telmatospirillum*siberiense*						# DOI:10.1016/j.syapm.2006.06.003
*Desulfuromonadaceae*Pelobacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Desulfuromonas*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Malonomonas*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobaculum*xiamenense*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfocurvus*vexinensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrionaceae*Desulfobaculum*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrionaceae*Desulfocurvus*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfonatronum*thioautotrophicum*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfonatronum*thiosulfatophilum*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobacteraceae*Desulfatirhabdium*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobacteraceae*Desulfatitalea*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobacteraceae*Desulfobotulus*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobacteraceae*Desulfoconvexum*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfobacteraceae*Desulfofrigus*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Pelolinea*submarina*								# DOI:10.1099/ijs.0.057547-0
*Anaerolineaceae*Thermomarinilinea*					# DOI:10.1264/jsme2.ME12193
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Rhodoferax*fermentans*								# DOI:10.1007/BF00243451
*Thermicanus*aegyptius*								# Gøßner et al (1999) - Thermicanus aegyptius gen. nov., sp. nov., Isolated from Oxic Soil, a Fermentative Microaerophile That Grows Commensally with the Thermophilic Acetogen Moorella thermoacetica
*Eubacterium*aggregans*								# DOI:10.1006/anae.1998.0179
*Lachnospiraceae*Acetitomaculum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Natronincola*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Tindallia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacterium*thalassium*						# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*pelagium*							# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*putridalgicola*					# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*kapii*								# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*gilvum*							# DOI:10.1099/ijs.0.042556-0
*Anaerobacillus*alkalilacustre*						# DOI:10.1134/S0026261709060095
*Martelella*radicis*								# DOI:10.1099/ijs.0.066373-0
*Martelella*BM9-1*									# DOI:10.1099/ijs.0.066373-0
*Sufflavibacter*maritimus*							# Kwon et al (2007) - Sufflavibacter maritimus gen. nov., sp. nov., novel Flavobacteriaceae bacteria isolated from marine environments
*Hydrogenispora*ethanolica*							# DOI:10.1099/ijs.0.060186-0
*Chitinivibrio*alkaliphilus*						# DOI:10.1111/1462-2920.12284
*Thermoflexus*hugenholtzii*							# DOI:10.1099/ijs.0.055855-0
*Shewanella*electrodiphila*							# DOI:10.1099/ijs.0.000345
*Desulfonatronum*buryatense*						# DOI:10.1007/s00792-013-0567-z
*Azoarcus*evansii*									# DOI:10.1099/00207713-45-2-327
*Propionibacteriaceae*Propionibacterium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Paenibacillus*anaericanus*							# DOI:10.1099/ijs.0.63484-0
*Ferrimonas*marina*									# DOI:10.1099/ijs.0.63689-0
*Gluconacetobacter*diazotrophicus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*vesiculosa*								# DOI:10.1099/ijs.0.000737-0
*Bacillus*vireti*									# DOI:10.1111/1462-2920.12478
*Citrobacter*freundii*								# DOI:10.1007/BF00242936
*Ammonifex*degensii*								# DOI:10.1016/S0723-2020(96)80007-5
*Psychrosinus*fermentans*							# DOI:10.1111/j.1574-6968.2008.01300.x
*Sharpea*azabuensis*								# DOI:10.1099/ijs.0.65543-0
*Kandleria*vitulina*								# DOI:10.1099/ijs.0.029231-0
*Eggerthia*catenaformis*							# DOI:10.1099/ijs.0.029231-0
*Mariniphaga*anaerophila*							# DOI:10.1099/ijs.0.066274-0
*Eubacterium*oxidoreducens*							# Krumholz and Bryant (1986) - Eubacterium oxidoreducens sp. nov. requiring H2 or formate to degrade gallate, pyrogallol, phloroglucinol and quercetin
*Clostridium*aminovalericum*						# Eikmanns and Buckel (1991) - A green 2,4-pentadienoyl-CoA reductase from Clostridium aminovalericum
*Clostridium*xylanovorans*							# DOI:10.1016/S0723-2020(99)80044-7
*Clostridium*viride*								# DOI:10.1007/BF00282102
*Pisciglobus*halotolerans*							# DOI:10.1099/ijs.0.025981-0
*Facklamia*ignava*									# Collins, Lawson et al (1998) - Facklamia ignava sp. nov., Isolated from Human Clinical Specimens
*Clostridium*oxalicum*								# DOI:10.1007/BF00277545
*Oxalophagus*oxalicus*								# DOI:10.1007/BF00277545  and  DOI:10.1099/00207713-44-4-812
*Oxalobacter*vibrioformis*							# DOI:10.1007/BF00277545
*Alistipes*indistinctus*							# DOI:10.1099/ijs.0.014571-0
*Odoribacter*splanchnicus*							# DOI:10.1099/ijs.0.63458-0  and  Werner, Rintelen et al. (1975) - A new butyric acid-producing bacteroides species: B. splanchnicus n. sp. (author's transl)
*Thermoanaerobaculum*aquaticum*						# DOI:10.1099/ijs.0.051425-0
*Telmatobacter*bradus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Desulfotomaculum*varum*							# DOI:10.1007/s13205-011-0017-5
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Christensenella*minuta*							# DOI:10.1099/ijs.0.026989-0
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Alkalimarinus*sediminis*							# DOI:10.1099/ijsem.0.000446
*Marinobacter*santoriniensis*						# DOI:10.1099/ijs.0.003145-0
*Sulfurospirillum*arcachonense*						# DOI:10.1099/00207713-47-4-1212
*Sulfurospirillum*barnesii*							# DOI:10.1099/00207713-49-3-1177
*Sulfurospirillum*arsenophilum*						# DOI:10.1099/00207713-49-3-1177
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Desulfoconvexum*algidum*							# DOI:10.1099/ijs.0.043703-0
*Desulfotomaculum*defluvii*							# DOI:10.1099/ijs.0.047662-0
*Caldicoprobacter*algeriensis*						# DOI:10.1007/s00284-010-9789-9
*Desulfovibrio*cavernae*							# DOI:10.1078/0723202041748181
*Desulfovibrio*oceani*								# DOI:10.1007/s10482-009-9403-y
*Desulfitispora*alkaliphila*						# DOI:10.1007/s00792-010-0310-y
*Desulfovibrio*piezophilus*							# DOI:10.1099/ijs.0.028670-0
*Desulfonatronum*thiosulfatophilum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronum*thioautotrophicum*					# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*magnus*						# DOI:10.1007/s00792-011-0370-7
*Desulfonatronovibrio*thiodismutans*				# DOI:10.1007/s00792-011-0370-7
*Desulfotomaculum*reducens*							# DOI:10.1111/j.1462-2920.2010.02242.x
*Tateyamaria*pelophila*								# DOI:10.1099/ijs.0.013524-0
*Desulfurispirillum*alkaliphilum*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Zobellella*taiwanensis*							# DOI:10.1099/ijs.0.64121-0
*Zobellella*denitrificans*							# DOI:10.1099/ijs.0.64121-0
*Zobellella*aerophila*								# DOI:10.1099/ijs.0.027466-0
*Celeribacter*indicus*								# DOI:10.1099/ijs.0.069039-0
*Citreicella*marina*								# DOI:10.1099/ijs.0.022376-0
*Celeribacter*marinus*								# DOI:10.1099/ijs.0.060673-0
*Marinilactibacillus*piezotolerans*					# DOI:10.1099/ijs.0.63236-0
*Exiguobacterium*profundum*							# DOI:10.1099/ijs.0.64639-0
*Salinimicrobium*marinum*							# DOI:10.1099/ijs.0.019166-0
*Mangrovibacterium*diazotrophicum*					# DOI:10.1099/ijs.0.052779-0
*Taonella*mepensis*									# DOI:10.1099/ijs.0.047803-0
*Longimonas*halophila*								# DOI:10.1099/ijs.0.000247
*Prevotella*salivae*								# DOI:10.1099/ijs.0.02876-0
*Prevotella*multisaccharivorax*						# DOI:10.1099/ijs.0.63739-0
*Prevotella*marshii*								# DOI:10.1099/ijs.0.63634-0
*Prevotella*baroniae*								# DOI:10.1099/ijs.0.63634-0
*Prevotellaceae*Alloprevotella*						# DOI:10.1099/ijs.0.041376-0
*Paraprevotella*clara*								# DOI:10.1099/ijs.0.008169-0
*Paraprevotella*xylaniphila*						# DOI:10.1099/ijs.0.008169-0
*Oscillibacter*valericigenes*						# DOI:10.1099/ijs.0.64717-0
*Clostridiales*Blautia*								# DOI:10.1099/ijs.0.65208-0
*Blautia*stercoris*									# DOI:10.1099/ijs.0.031625-0
*Blautia*glucerasei*								# DOI:10.1007/s00203-010-0566-8
*Rhizomicrobium*electricum*							# DOI:10.1099/ijs.0.023580-0
*Sporomusa*rhizae*									# DOI:10.1099/mic.0.28725-0
*Cellulosimicrobium*cellulans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Telmatobacter*bradus*								# DOI:10.1099/ijs.0.029629-0
*Caldithrix*palaeochoryensis*						# DOI:10.1099/ijs.0.016667-0
*Caldithrix*abyssi*									# DOI:10.1099/ijs.0.02390-0
*Alkalitalea*saponilacus*							# DOI:10.1099/ijs.0.038315-0
*Thermoanaerobacter*mathranii*BG1*					# DOI:US Patent US 8512714 B2
*Haloanaerobium*alcaliphilum*						# DOI:10.1099/00207713-45-2-301
*Thennosipho*melanesiensis*							# DOI:10.1099/00207713-47-4-1118
*Rubrivivax*gelatinosus*							# DOI:10.1128/JB.00511-12  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobium*marinum*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*stamsii*									# DOI:10.1016/j.syapm.2015.06.004
*Oscillibacter*ruminantium*							# DOI:10.1099/ijs.0.041749-0
*Themoanaerobacterium*calidifontis*					# DOI:10.1007/s00203-013-0895-5
*Youngiibacter*fragilis*							# DOI:10.1099/ijs.0.053728-0
*Youngiibacter*multivorans*							# DOI:10.1099/ijs.0.053728-0
*Thermogladius*shockii*								# DOI:10.1007/s00203-010-0639-8
*Caloramator*mitchellensis*							# DOI:10.1099/ijs.0.023655-0
*Fervidicella*metallireducens*						# DOI:10.1099/ijs.0.014670-0
*Desulfosoma*caldarium*								# DOI:10.1099/ijs.0.020586-0
*Kosmotoga*arenicorallina*							# DOI:10.1007/s00203-010-0611-7
*Oceanotoga*teriensis*								# DOI:10.1099/ijs.0.018036-0
*Fervidobacterium*riparium*							# DOI:10.1099/ijs.0.026070-0
*Proteiniclasticum*ruminis*							# DOI:10.1099/ijs.0.011759-0
*Caldicellulosiruptor*obsidiansis*					# DOI:10.1128/AEM.01903-09  and  DOI:10.1007/s00792-013-0512-1
*Thermoanaerobacteraceae*Thermoanaerobacter*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Flavobacterium*hydatis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Actinomycetaceae*Actinomyces*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinobaculum*suis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinobaculum*schaalii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomycetaceae*Arcanobacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mobiluncus*mulieris*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Aeriscardovia*aeriphila*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Alloscardovia*omnicolens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Bifidobacteriaceae*Gardnerella*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Metascardovia*criceti*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Parascardovia*denticolens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Bifidobacteriaceae*Scardovia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ammoniagenes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*appendicis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*aurimucosum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cor*ynebacterium*freneyi*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*glaucum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*mycetoides*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*resistens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*simulans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*sundsvallense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*thomssenii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ulcerans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*xerosis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*globiformis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*subterraneus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcaceae*Rothia*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonadaceae*Cellulomonas*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Oerskovia*turbata*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Oerskovia*paurometabola*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermabacteraceae*Dermabacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leifsonia*xyli*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonospora*aerolata*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonospora*kroppenstedtii*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulosimicrobium*cellulans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Xylanimicrobium*pachnodae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionibacterium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Brooklawnia*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Luteococcus*japonicus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionicicella*superfundia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicimonas*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionimicrobium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*achromogenes*rubradiris*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Coriobacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Collinsella*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriales*Olsenella							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Olsenella						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Bacteroidaceae*Bacteroides*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidaceae*Acetofilamentum*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidaceae*Acetomicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidaceae*Acetothermus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Marinilabiliaceae*Marinilabilia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Marinilabiliaceae*Anaerophaga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Marinilabiliaceae*Alkaliflexus*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rikenellaceae*Rikenella*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Alistipes*onderdonkii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Alistipes*shahii*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidales*Porphyromonas*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Porphyromonas*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Barnesiellaceae*Barnesiella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Barnesiella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidales*Dysgonomonas*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Dysgonomonas*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidales*Paludibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Paludibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidales*Petrimonas*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Petrimonas*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Prevotella*bergensis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*buccalis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*corporis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*dentalis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*denticola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*disiens*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*heparinolyticus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*intermedia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*loescheii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*marshii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*multiformis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*nigrescens*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*oralis*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*oris*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*oulorum*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*pallens*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*ruminicola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*veroralis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*zoogleoformans*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotellaceae*Xylanibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*hydatis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*succinicans*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Algibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Algibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Capnocytophaga*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Capnocytophaga*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Chryseobacterium*scophthalmum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Cloacibacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Cloacibacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Mariniflexile*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Mariniflexile*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Muricauda*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Muricauda*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Sejongia*antarctica*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sejongia*jeonii*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidia*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Cytophaga*fermentans*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophaga*xylanolytica*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dyadobacter*fermentans*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Meniscus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Runella*zeae*										# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cyclobacteriaceae*Echinicola*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirga*aprica*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*africana*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*alkalica*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*americana*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*asiatica*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*aurantia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*bajacaliforniensis*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*caldaria*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*halophila*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*isovalerica*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*smaragdinae*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*litoralis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*stenostrepta*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*zuelzerae*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Spirochaeta*coccoides*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Borrelia*turicatae*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*pallidum*pallidum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*azotonutricium*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*bryantii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*denticola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*medium*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*minutum*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*pectinovorum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*phagedenis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*primitia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*refringens*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*saccharophilum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*scoliodontus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*socranskii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*succinifaciens*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*vincentii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*macrodentium*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*orale*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Treponema*zioleckii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Entomoplasmataceae*Entomoplasma*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Entomoplasmataceae*Mesoplasma*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Anaeroplasmataceae*Anaeroplasma*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Holophagaceae*Holophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Holophagaceae*Geothrix*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fibrobacteraceae*Fibrobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacteriaceae*Fusobacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacteriaceae*Cetobacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacteriaceae*Ilyobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacteriaceae*Propionigenium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Leptotrichiaceae*leptotrichia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Leptotrichiaceae*Sebaldella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Leptotrichiaceae*Sneathia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Leptotrichiaceae*Streptobacillus*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dictyoglomaceae*Dictyoglomus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Victivallis*vadensis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Verrucomicrobiaceae*Verrucomicrobium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Akkermansiaceae*akkermansia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Opitutaceae*Opitutus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Opitutaceae*alterococcus							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacillus*arseniciselenatis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*infernus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*selenitireducens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillaceae*Anoxybacillus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Listeriaceae*Listeria*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Listeriaceae*Brochothrix*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*polymyxa*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillusanaericanus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*koreensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*macerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*turicensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Planomicrobium*mcmeekinii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporolactobacillaceae*Sporolactobacillus*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermicanus*aegyptius*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Gemella*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillaceae*Lactobacillus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactobacillaceae*Paralactobacillus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aerococcaceae*Abiotrophia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Facklamia*sourekii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Globicatella*sulfidifaciens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacterium*divergens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacterium*alterfunditum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacterium*funditum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacterium*maltaromaticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacterium*mobile*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacterium*psychrotolerans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacterium*iburiense*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacteriaceae*Desemzia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Granulicatella*adiacens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Marinilactibacillus*psychrotolerans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carnobacteriaceae*Trichococcus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Enterococcaceae*Enterococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Enterococcaceae*Tetragenococcus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Leuconostocaceae*Leuconostoc*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Leuconostocaceae*Oenococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Leuconostocaceae*Weissella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptococcaceae*Streptococcus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptococcaceae*Lactococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactococcus*lactis*lactis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactococcus*plantarum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lactococcus*raffinolactis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptococcaceae*Lactovum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*butyricum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*acetobutylicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*acidisoli*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aciditolerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aestuarii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*akagii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldenense*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldrichii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*algidicarnis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*algidixylanolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*alkalicellulosi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*amygdalinum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*arcticum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*asparagiforme*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aurantibutyricum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*baratii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*beijerinckii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*bifermentans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*bowmanii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cadaveris*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*caminithermale*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*celatum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*celerecrescens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellobioparum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulosi*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*chauvoei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*clostridioforme*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*coccoides*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cochlearium*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*collagenovorans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cylindrosporum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*diolis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*disporicum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*estertheticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*fimetarium*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*formicaceticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*frigidicarnis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*frigoris*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*ganghwense*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*gasigenes*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*glycolicum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*grantii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*haemolyticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*halophilum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hathewayi*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*herbivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*histolyticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*homopropionicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hylemonae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*indolis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*intestinale*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*jejuense*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*kluyveri*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lacusfryxellense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lentocellum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*limosum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*litorale*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*magnum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*mayombei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*methoxybenzovorans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*methylpentosum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*neopropionicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*novyi*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*papyrosolvens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*paradoxum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*paraputrificum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*pascui*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiumpeptidivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*phytofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polyendosporum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*populeti*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*proteoclasticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*proteolyticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*psychrophilum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*purinilyticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*quinii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*ramosum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*roseum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*saccharobutylicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*saccharolyticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*saccharoperbutylacetonicum*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*sardiniense*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*sartagoforme*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*scatologenes*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*schirmacherense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*scindens*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*septicum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*schirmacherense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*scindens*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*sphenoides*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*stercorarium*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*stercorarium*leptospartum*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*stercorarium*thermolacticum*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*straminisolvens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*symbiosum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*termitidis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*tertium*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*thermoalcaliphilum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*thermobutyricum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*thermopalmarium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*thermopapyrolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*tyrobutyricum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*uliginosum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*ultunense*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*viride*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*vincentii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*xylanolyticum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Anaerobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Anoxynatronum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Caloramator*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Caloranaerobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Caminicella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Natronincola*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Oxobacter*pfennigii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Sarcina*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Thermohalobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Tindallia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*limosum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*acidaminophilum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*barkeri*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*biforme*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*budayi*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*callanderi*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*coprostanoligenes*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*desmolans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*fissicatena*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*hallii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*ramulus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*rectale*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*sulci*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*uniforme*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*xylanophilum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Acetobacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Alkalibacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Garciella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Pseudoramibacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Gracilibacter*thermotolerans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Lachnospira*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Acetitomaculum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Butyrivibrio*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Catonella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Coprococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Dorea*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Hespellia*porcina*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Hespellia*stercorisuis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Lachnobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Pseudobutyrivibrio*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Roseburia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Shuttleworthia*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporobacterium*olearium*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pelotomaculum*terephthalicicum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pelotomaculum*thermopropionicum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*chlororespirans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Desulfonispora*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Desulfosporosinus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Sporotomaculum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Syntrophobotulus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptostreptococcus*stomatis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Filifactor*villosus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Tepidibacter*formicigenes*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Ruminococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Acetivibrio*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Anaerofilum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Anaerotruncus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Faecalibacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Subdoligranulum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Syntrophomonadaceae*Pelospora*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Syntrophospora*bryantii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Syntrophothermus*lipocalidus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Veillonella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Acetonema*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acidaminococcus*fermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Anaeroarcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Anaeromusa*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Anaerovibrio*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Centipeda*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Megasphaera*elsdenii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Mitsuokella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pectinatus*cerevisiiphilus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pectinatus*haikarae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pectinatus*frisingensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Phascolarctobacterium*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Propionispira*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Propionispora*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Quinella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Schwartzia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Selenomonas*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Succiniclasticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Succinispira*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Thermosinus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Zymophilus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anaerococcus*octavius*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anaerococcus*tetradius*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Sedimentibacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Soehngenia*saccharolytica*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Sporanaerobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporanaerobacter*acetigenes*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Acidaminobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Anaerovorax*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anaerobaculum*mobile*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anaerobaculum*thermoterrenum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aminomonas*paucivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Anaerobaculum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Synergistetes*Dethiosulfovibrio*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Dethiosulfovibrio*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3. Legacy taxonomy
*Firmicutes*Acetoanaerobium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*praevalens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*acetethylicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*congolense*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*fermentans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*kushneri*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*lacusrosei*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*saccharolyticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*salsuginis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobiaceae*Halocella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Halobacteroides*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Halanaerobacter*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Halonatronum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Natroniella*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Orenia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Sporohalobacter*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Thermoanaerobacter*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Caldanaerobacter*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermacetogenium*phaeum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Coprothermobacter*proteolyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Coprothermobacter*platensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Caldicellulosiruptor*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Thermoananerobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermovenabulum*ferriorganovorum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Mahella*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Erysipelotrichaceae*Bulleidia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Erysipelotrichaceae*Catenibacterium*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Erysipelotrichaceae*Holdemania*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Erysipelotrichaceae*Solobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Erysipelotrichaceae*Turicibacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*chartatabidum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aerotolerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*equorum*linens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Oxalobacter*vibrioformis*							# Dehning and Schink (1989) - Two new species of anaerobic oxalate- fermenting bacteria, Oxalobacter vibrioformis sp. nov. and Clostridium oxalicum sp. nov., from sediment samples
*Clostridium*oxalicum*								# Dehning and Schink (1989) - Two new species of anaerobic oxalate- fermenting bacteria, Oxalobacter vibrioformis sp. nov. and Clostridium oxalicum sp. nov., from sediment samples
*Rhodospirillum*rubrum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azospirillum*largimobile*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azospirillales*Skermanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillaceae*Skermanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodobacteraceae*Rhodovulum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Citromicrobium*bathyomarinum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sphingomonadaceae*Zymomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodopseudomonas*palustris*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Ancalomicrobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Ancalomicrobium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Gemmiger*formicilis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobium*marinum*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderiaceae*Lautropia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Rhodoferax*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Rhodoferax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rubrivivax*gelatinosus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Formivibrio*citricus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Catenococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Catenococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Propionivibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfohalobium*retbaense*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacteraceae*Desulfobacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacteraceae*Desulfofaba*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobacteraceae*Desulfotignum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobulbaceae*Desulfobulbus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfocapsa*thiozymogenes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfocapsa*sulfexigens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfobulbaceae*Desulforhopalus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulforhopalus*vacuolatus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulforhopalus*singaporensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pelobacter*acidigallici*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pelobacter*acetylenicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pelobacter*carbinolicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pelobacter*massiliensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pelobacter*propionicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pelobacter*venetianus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacterales*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacteraceae*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Syntrophaceae*Syntrophus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophaceae*Desulfomonile*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sorangium*cellulosum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurospirillum*arsenophilum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Crenarchaeota*Thermosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrodictium*abyssi*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrodictiaceae*Hyperthermus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermococcus*alcaliphilus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermococcus*fumicolans*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermococcus*hydrothermalis*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermotogaceae*Thermotoga*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Fervidobacterium*nodosum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Fervidobaeterium*gondwanense*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Fervidobaeterium*pennivorans*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermotogae*Thermosipho*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Deferribacteraceae*Flexistipes*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Methanosarcina*barkeri*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrococcus*furiosus*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Cardiobacteriaceae*Cardiobacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Cardiobacteriaceae*Suttonella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Halomonadaceae*Zymobacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Serratia*rubidaea*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Moraxella*equi*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Psychrobacter*Enhydrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadales*Colwellia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadaceae*Colwellia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Psychromonas*kaikoae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Psychromonas*profunda*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*gelidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*aerogenes*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*ichthyoenteri*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrionaceae*Photobacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aeromonadaceae*Aeromonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aeromonadaceae*Tolumonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Succinivibrionaceae*Succinivibrio*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Succinivibrionaceae*Anaerobiospirillum*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Succinivibrionaceae*Ruminobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Succinivibrionaceae*Succinimonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Escherichia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Escherichia*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Alterococcus*agarolyticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Brenneria*salicis*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Budvicia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Budvicia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Buttiauxella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Buttiauxella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Cedecea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Cedecea*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Citrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Citrobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Edwardsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Edwardsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Enterobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Enterobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Erwinia*amylovora*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Erwinia*aphidicola*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Erwinia*pyrifoliae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ewingella*americana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Kluyvera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Kluyvera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Leclercia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Leclercia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Leminorella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Leminorella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Moellerella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Moellerella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Obesumbacterium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Obesumbacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Hafnia-Obesumbacterium*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Pantoea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Pantoea*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Photorhabdus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Photorhabdus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Plesiomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Plesiomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Plesiomonas*shigelloides*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Pragia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Pragia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Providencia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Providencia*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Rahnella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Rahnella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Saccharobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Saccharobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Salmonella*enterica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Serratia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Serratia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Shigella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Shigella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Escherichia-Shigella*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Tatumella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Tatumella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Trabulsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Trabulsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Xenorhabdus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Xenorhabdus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Yersinia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Yersinia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Yokenella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Yokenella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Pasteurellaceae*Pasteurella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pasteurellaceae*Actinobacillus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lonepinella*koalarum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pasteurellaceae*Mannheimia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridiaceae*Anaerobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pseudobutyrivibrio*xylanivorans*					# DOI:10.1099/ijs.0.02345-0
*Clostridium*cellulovorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Shewanella*frigidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*benthica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*gelidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Clostridium*butyricum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Enterobacteriales*Citrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Citrobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Aliivibrio*finisterrensis*							# DOI:10.1099/ijs.0.010710-0
*Vibrionaceae*Aliivibrio*							# DOI:10.1099/ijs.0.010710-0
*Enterobacteriales*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Clostridium*pasteurianum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*caminithermale*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cadaveris*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*bowmanii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*bifermentans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*beijerinckii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*bartlettii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*baratii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aurantibutyricum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*asparagiforme*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*arcticum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*amygdalinum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aminophilum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*alkalicellulosi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*algidicarnis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldrichii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aldenense*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*akagii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aestuarii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*aerotolerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*acidisoli*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*acetobutylicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*butyricum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Enterobacteriales*Kluyvera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Kluyvera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Thermotogaceae*Thermotoga*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Eubacterium*acidaminophilum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Arthrobacter*globiformis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Aeromonadaceae*Aeromonas*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Arthrobacter*globiformis*							# DOI:10.1016/S0378-1097(03)00383-5
*Enterobacteriales*Enterobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Enterobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Megasphaera*elsdenii*								# Marounek et al. (1989) - Metabolism and some characteristics of ruminal strains of Megasphaera elsdenii
*Spirochaetaceae*Spirochaeta*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Veillonellaceae*Veillonella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anaerolinea*thermolimosa*							# DOI:10.1099/ijs.0.64169-0
*Levilinea*saccharolytica*							# DOI:10.1099/ijs.0.64169-0
*Leptolinea*tardivitalis*							# DOI:10.1099/ijs.0.64169-0
*Paludibacter*propionicigenes*						# DOI:10.1099/ijs.0.63896-0
*Paludibacter*jiangxiensis*							# DOI:10.1007/s00203-013-0951-1
*Streptococcus*thermophilus*						# DOI:10.1051/lait:2003031
*Lactobacillus*delbrueckii*							# DOI:10.1051/lait:2003031
*Streptococcus*sobrinus*							# DOI:10.1159/000072171
*Streptococcus*bovis*								# DOI:10.1046/j.1344-3941.2002.00044.x
*Methylocystis*parvus*								# DOI:10.1111/j.1758-2229.2009.00069.x
*Lachnospira*multiparus*							# Rode et al. (1981) - Syntrophic Association by Cocultures of the Methanol- and CO(2)-H(2)-Utilizing Species Eubacterium limosum and Pectin-Fermenting Lachnospira multiparus During Growth in a Pectin Medium
*Lachnospiraceae*Roseburia*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*perfringens*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacteriaceae*Bifidobacterium*				# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383  and  Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Enterococcus*										# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Escherichia*coli*									# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Ruminobacter*										# Holt (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Klebsiella*pneumoniae*								# Meurant (2012) - Computer-Assisted Bacterial Systematics, ISBN: 9780080984445
*Klebsiella*ozaenae*								# Meurant (2012) - Computer-Assisted Bacterial Systematics, ISBN: 9780080984445
*Klebsiella*rhinoscleromatis*						# Meurant (2012) - Computer-Assisted Bacterial Systematics, ISBN: 9780080984445
*Klebsiella*planticola*								# Meurant (2012) - Computer-Assisted Bacterial Systematics, ISBN: 9780080984445
*Vibrio*hollisae*									# Meurant (2012) - Computer-Assisted Bacterial Systematics, ISBN: 9780080984445
*Lactobacillus*										# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences  and  Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Brevibacterium*linens*								# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Penicillium*cambertii*								# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Lactobacillus*casei*								# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Streptococcus*cremoris*							# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Lactobacillus*delbrueckii*							# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Streptococcus*diacetilactis*						# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Lactobacillus*										# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Zymomonas*mobilis*									# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Clostridium*propionicum*							# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Klebsiella*										# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Enterobacter*										# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Moorella*thermoacetica*							# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Clostridium*acetobutylicum*						# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Serratia*											# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Enterobacteriales*Erwinia*							# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Enterobacteriaceae*Erwinia*						# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences. Legacy taxonomy
*Hafnia*											# Volker Mueller (2001) - Bacterial Fermentation, Encyclopedia of life sciences
*Aerobacter*										# Gerardi (2006) - Wastewater Bacteria, ISBN: 9780471979890
*Fibrobacter*succinogens*							# Srivastava (2013) - Understanding Bacteria, ISBN: 9789401701297
*Ruminococcus*albus*								# Srivastava (2013) - Understanding Bacteria, ISBN: 9789401701297
*Ruminococcus*flavefaciens*							# Srivastava (2013) - Understanding Bacteria, ISBN: 9789401701297
*Butyvivibrio*fibrisolvens*							# Srivastava (2013) - Understanding Bacteria, ISBN: 9789401701297
*Prerotella*ruminicola*								# Srivastava (2013) - Understanding Bacteria, ISBN: 9789401701297
*Selenomonas*ruminatium*							# Srivastava (2013) - Understanding Bacteria, ISBN: 9789401701297
*Oenocuccus*										# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Leuconostoc*mesenteroides*							# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Leuconostoc*oenos*									# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Lactobacillus*plantarum*							# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Lactobacillus*casei*								# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Pediococcus*damnosus*								# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Pediococcus*pentosaceus*							# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Pediococcus*parvulus*								# Konigs, Kuipers et al. (2013) - Lactic Acid Bacteria: Genetics, Metabolism and Applications: Proceedings of the Sixth Symposium on lactic acid bacteria: genetics, metabolism and applications, ISBN: 9789401720274
*Leuconostoc*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Pediococcus*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Streptococcus*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Aerococcus*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Carnobacterium*									# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Enterococcus*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Lactococcus										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Streptococcus*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Tetragenococcus*									# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Vagococcus*										# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Weissella*											# Salminen and von Wright (2004) - Lactic Acid Bacteria: Microbiological and Functional Aspects, ISBN: 9780824752033
*Haloanaerobiales*									# DOI:10.1006/anae.1995.1018
*Halobacteroidaceae*								# DOI:10.1006/anae.1995.1018
*Orenia*											# DOI:10.1006/anae.1995.1018
*Shigella*dysenteriae*								# Hugh and Leifson (1953) - The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
*higella*sonnei*									# Hugh and Leifson (1953) - The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
*Vibrio*comma*										# Hugh and Leifson (1953) - The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
*Salmonella*enteritidis*							# Hugh and Leifson (1953) - The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
*Aeromonas*liquefaciens*							# Hugh and Leifson (1953) - The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
*Aerobacter*aerogenes*								# Hugh and Leifson (1953) - The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria
*Propionibacterium*									# Malik et al. (1968) - An evaluation of the taxonomy of Propionibacterium
*Aquitalea*magnusonii*								# DOI:10.1099/ijs.0.64089-0
*Rhizobiales*Gemmiger*								# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Hyphomicrobiaceae*Gemmiger*						# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032 . Legacy taxonomy
*Seliberia*											# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Rhizomicrobium*palustre*							# DOI:10.2323/jgam.56.193
*Vibrionales*Vibrionaceae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Peptostreptococcaceae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, The Firmicutes
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Holophagaceae*Holophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Ruminococcaceae*Ruminococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Anaerophaga*										# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sporosarcina*psychrophila*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Rhodobacteraceae*Rhodovulum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Geotoga*petraea*									# DOI:10.1016/S0723-2020(11)80467-4
*Lachnospiraceae*Lachnospira*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Bacteroidales*Dysgonomonas*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Dysgonomonas*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidaceae*Bacteroides*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidales*Paludibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Paludibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Opitutaceae*Opitutus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Syntrophorhabdus*aromaticivorans*					# DOI:10.1128/AEM.02378-07
*Halanaerobiaceae*Halanaerobium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alteromonadales*Colwellia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadaceae*Colwellia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Ruminococcaceae*Faecalibacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Rikenellaceae*Alistipes*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Lachnospiraceae*Pseudobutyrivibrio*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Dictyoglomi*Dictyoglomus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidales*Parabacteroides*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Parabacteroides*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Ruminococcaceae*Ethanoligenens*					# DOI:10.1099/ijs.0.63926-0
*Ruminococcaceae*Acetanaerobacterium*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Victivallaceae*Victivallis*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Ruminococcaceae*Anaerotruncus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacteroidia*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Barnesiellaceae*Barnesiella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Barnesiella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Clostridiales*Fusibacter*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiales*Acidaminobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pasteurellaceae*Haemophilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lachnospiraceae*Coprococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Hespellia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Lachnobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Moryella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Oribacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Anaerostipes*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Bryantella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Butyrivibrio*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Alkaliphilus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Anoxynatronum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiales*Sedimentibacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Tannerellaceae*Tannerella*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Tannerella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Propionivibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Actinomycetaceae*Actinomyces*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcaceae*Rothia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicicella*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Collinsella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Bacteroidales*Porphyromonas*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Porphyromonadaceae*Porphyromonas*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Rikenellaceae*Rikenella*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Algibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Algibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Cloacibacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Cloacibacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Carnobacteriaceae*Atopostipes*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptococcaceae*Lactococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Acetobacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Subdoligranulum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Erysipelotrichaceae*Allobaculum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acidaminococcaceae*Phascolarctobacterium*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Propionivibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Moraxellaceae*Enhydrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Anaeroplasmataceae*Anaeroplasma*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacteriaceae*Propionigenium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Opitutaceae*Alterococcus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Pseudovibrio*denitrificans*						# DOI:10.1099/ijs.0.63107-0
*Streptococcaceae*Streptococcus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aeromonadaceae*Tolumonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Propionibacteriaceae*Brooklawnia*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Synergistaceae*Synergistes*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Deferribacteres*Synergistes*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Lactosphaera*pasteurii*							# DOI:10.5772/55920
*Propionicimonas*paludicola*						# DOI:10.5772/55920
*Lactosphaera*pasteurii*							# DOI:10.5772/55920
*Thermococcus*sibericus*							# DOI:10.5772/55920
*Petrotoga*olearia*									# DOI:10.5772/55920
*Petrotoga*siberica*								# DOI:10.5772/55920
*Thermosipho*geolei*								# DOI:10.5772/55920
*Anaerobaculum*thermoterrenum*						# DOI:10.5772/55920
*Fusibacter*paucivorans*							# DOI:10.5772/55920
*Thermovirga*lienii*								# DOI:10.5772/55920
*Syntrophobacterales*Desulfacinum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Syntrophobacter*Desulfacinum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Ruminococcaceae*Sporobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporobacter*termitidis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Holophagaceae*Holophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Crenarchaeota*Desulfurococcales*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Deferribacteraceae*Flexistipes*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Succinivibrionaceae*Succinivibrio*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Desulforhopalus*singaporensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillaceae*Anoxybacillus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Garciella*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Heliobacteriaceae*Heliobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Veillonella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Mitsuokella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiales*Sporanaerobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Thermanaeromonas*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Petrimonas*sulfuriphila*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidia*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Spirochaeta*halophila*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Geothrix*fermentans*								# DOI:10.1099/00207713-49-4-1615  and  Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacterium*ulcerans*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cetobacterium*somerae*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Opitutaceae*Opitutus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulomonadaceae*Cellulomonas*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicicella*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicimonas*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriales*Atopobium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Atopobium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Coriobacteriales*Olsenella*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Olsenella*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Rhodospirillum*rubrum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Azospirillales*Skermanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Skermanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodobacteraceae*Rhodovulum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Gammaproteobacteria*Rhodoferax*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Comamonadaceae*Rhodoferax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Clostridium*cellulofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulosi*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*chartatabidum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*drakei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*fimetarium*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*herbivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*lentocellum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*phytofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*termitidis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*thermocellum**							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcus*flavefaciens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aminobacterium*mobile*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobiaceae*Halocella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*saccharolyticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*kristjanssonii*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*lactoaceticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Caldicellulosiruptor*owensensis*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Marinilabiliaceae*Alkaliflexus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Fibrobacteraceae*Fibrobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Clostridium*aerotolerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulovorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*hungatei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*phytofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*polysaccharolyticum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*stercorarium*thermolacticum*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Caloramator*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacterium*uniforme*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*italicus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*saccharolyticum*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*thermosaccharolyticum*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*zeae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Prevotella*bryantii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*ruminicola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotella*veroralis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Prevotellaceae*Xylanibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bifidobacterium*saeculare*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Crenarchaeota*Thermosphaera*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Petrotoga*mobilis*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Corynebacterium*glaucum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*mycetoides*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*spheniscorum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Demequina*globuliformis*							# DOI:10.1099/ijs.0.024299-0
*Demequina*salsinemoris*							# DOI:10.1099/ijs.0.024299-0
*Dermabacteraceae*Dermabacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Verrucomicrobiaceae*Verrucomicrobium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulomonas*fermentans*							# DOI:10.1099/ijs.0.64525-0
*Cellulomonadaceae*Oerskovia*						# DOI:10.1099/ijs.0.64525-0
*Sanguibacteraceae*Sanguibacter*					# DOI:10.1099/ijs.0.64525-0
*Promicromonosporaceae*Cellulosimicrobium*			# DOI:10.1099/ijs.0.64525-0
*Bogoriellaceae*Georgenia*							# DOI:10.1099/ijs.0.64525-0
*Micrococcales*Isoptericola*						# DOI:10.1099/ijs.0.64525-0
*Phycisphaera*mikurensis*							# Fugunaga et al (2009). Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov. in the phylum Planctomycetes.
*Enterobacteriales*Budvicia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Budvicia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Verrucomicrobiaceae*Verrucomicrobium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Corynebacterium*ulcerans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*iranensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Cellulomonas*persica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Rhodobacter*sphaeroides*							# DOI:10.1146/annurev.micro.61.080706.093402
*Peptococcaceae*Desulfonispora*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 53
*Desulfomicrobiaceae*Desulfomicrobium*				# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfuromonaceae*Pelobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfurococcus*mucosus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*aespoeensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*alcoholovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*aminophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*burkinensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*carbinolicus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*cuneatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*fructosovorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gabonensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*giganteus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*gigas*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*intestinalis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*litoralis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*longreachensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*oxyclinae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*profundus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*termitidis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*vulgaris*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*zosterae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Bacillus*licheniformis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*cereus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*thuringiensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Shewanella*benthica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*frigidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*violacea*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Eubacteriaceae*Acetobacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3





aerobic_chemoheterotrophy			elements:C,O; main_element:C; electron_donor:C; electron_acceptor:O; aerobic:yes; exclusively_prokaryotic:no; light_dependent:no
# other than lignin, chitin, xylan, cellulose, methanol, methane, aromatic hydrocarbons
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Halobacteriales*Natronomonas*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Natronomonas*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Halobacteriales*Natrinema*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Natrinema*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Halobacteriales*Haloterrigena*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Haloterrigena*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Halobacteriales*Halogeometricum*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Halogeometricum*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Halobacteriales*Halobaculum*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Halobaculum*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Sulfolobaceae*Sulfurisphaera*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Crenarchaeota*Aeropyrum*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Desulfurococcaceae*Aeropyrum*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Burkholderia*insulsa*								# DOI:10.1099/ijs.0.064477-0
*Denitratisoma*oestradiolicum*						# DOI:10.1099/ijs.0.63672-0
*Dechloromonas*hortensis*							# DOI:10.1099/ijs.0.63404-0
*Rhodobacteraceae*Cereibacter*						# DOI:10.1099/ijs.0.65110-0  and  DOI:10.1099/ijs.0.000016
*Rhodobacter*changlensis*							# DOI:10.1099/ijs.0.65110-0
*Bacteria*Ignavibacteriae*							# DOI:10.1111/1462-2920.12067
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Gammaproteobacteria*Rhodoferax*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C  and  DOI:10.1099/ijs.0.02298-0  and  DOI:10.1007/BF00243451  and  DOI:10.1007/s002030000140
*Comamonadaceae*Rhodoferax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C  and  DOI:10.1099/ijs.0.02298-0  and  DOI:10.1007/BF00243451  and  DOI:10.1007/s002030000140 . Legacy taxonomy
*Rhodoferax*ferrireducens*							# DOI:10.1099/ijs.0.02298-0
*Rhodoferax*fermentans*								# DOI:10.1007/BF00243451
*Rhodoferax*antarcticus*							# DOI:10.1007/s002030000140
*Acidobacteria*Bryobacter*							# DOI:10.1099/ijs.0.013250-0
*Metallibacterium*scheffleri*						# DOI:10.1099/ijs.0.042986-0
*Arenicella*chitinivorans*							# DOI:10.1099/ijs.0.051599-0
*Arenicella*xantha*									# DOI:10.1099/ijs.0.017194-0
*Oceanisphaera*donghaensis*							# DOI:10.1099/ijs.0.64116-0
*Arcobacter*molluscorum*							# DOI:10.1016/j.syapm.2010.10.001
*Phaselicystis*flava*								# DOI:10.1099/ijs.0.003814-0
*Pseudorhodoferax*aquiterrae*						# DOI:10.1099/ijs.0.039842-0
*Mitsuaria*chitosanitabida*							# DOI:10.1099/ijs.0.63629-0
*Ottowia*thiooxydans*								# DOI:10.1099/ijs.0.02727-0
*Phenylobacterium*muchangponense*					# DOI:10.1099/ijs.0.028902-0
*Phenylobacterium*composti*							# DOI:10.1099/ijs.0.65530-0
*Amorphus*orientalis*								# DOI:10.1099/ijs.0.015735-0
*Alkalibacterium*thalassium*						# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*pelagium*							# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*putridalgicola*					# DOI:10.1099/ijs.0.65602-0
*Alkalibacterium*gilvum*							# DOI:10.1099/ijs.0.042556-0
*Pullulanibacillus*uraniitolerans*					# DOI:10.1099/ijs.0.040923-0
*Bhargavaea*cecembensis*							# DOI:10.1099/ijs.0.002691-0
*Cohnella*plantaginis*								# DOI:10.1007/s10482-012-9715-1
*Bacillus*safensis*									# DOI:10.1099/ijs.0.64189-0
*Bacillus*altitudinis*								# DOI:10.1099/ijs.0.64029-0
*Bacillus*aerius*									# DOI:10.1099/ijs.0.64029-0
*Paenibacillus*darwinianus*							# DOI:10.1099/ijs.0.056697-0
*Bacillus*tusciae*									# DOI:10.1007/BF00408386
*Kyrpidia*tusciae*									# DOI:10.1007/BF00408386  and  DOI:10.4056/sigs.2144922
*Thermogemmatispora*carboxidivorans*				# DOI:10.1099/ijs.0.059675-0
*Litorilinea*aerophila*								# DOI:10.1099/ijs.0.044115-0
*Fluviicola*taffensis*								# DOI:10.1099/ijs.0.63736-0
*Larkinella*insperata*								# DOI:10.1099/ijs.0.63948-0
*Chryseolinea*serpens*								# DOI:10.1099/ijs.0.039404-0
*Arcicella*aurantiaca*								# DOI:10.1099/ijs.0.021527-0
*Arcicella*aquatica*								# DOI:10.1099/ijs.0.02896-0
*Rhodonellum*psychrophilum*							# DOI:10.1099/ijs.0.64450-0
*Cyclobacterium*marinus*							# DOI:10.1099/00207713-40-4-337
*Cyclobacterium*amurskyense*						# DOI:10.1099/ijs.0.63781-0
*Rheinheimera*pacifica*								# DOI:10.1099/ijs.0.02252-0
*Rheinheimera*aquimaris*							# DOI:10.1099/ijs.0.64898-0
*Oceanimonas*smirnovii*								# DOI:10.1016/j.syapm.2004.11.002
*Aquincola*tertiaricarbonis*						# DOI:10.1099/ijs.0.64663-0
*Tropicimonas*isoalkanivorans*						# DOI:10.1099/ijs.0.65822-0
*Thalassobaculum*salexigens*						# DOI:10.1099/ijs.0.011460-0
*Pseudorhodobacter*wandonensis*						# DOI:10.1099/ijs.0.042879-0
*Thalassococcus*lentus*								# DOI:10.1007/s10482-012-9826-8
*Primorskyibacter*sedentarius*						# DOI:10.1099/ijs.0.025551-0
*Ponticoccus*litoralis*								# DOI:10.1099/ijs.0.65612-0
*Rubrimonas*shengliensis*							# DOI:10.1016/j.syapm.2011.03.004
*Phaeobacter*daeponensis*							# DOI:10.1099/ijs.0.64779-0
*Phaeobacter*caeruleus*								# DOI:10.1099/ijs.0.002642-0
*Phaeobacter*arcticus*								# DOI:10.1099/ijs.0.65708-0
*Octadecabacter*antarcticus*						# DOI:10.1016/S0723-2020(97)80003-3
*Roseobacter*algicola*								# DOI:10.1099/00207713-45-2-290
*Marinovum*algicola*								# DOI:10.1099/00207713-45-2-290  and  DOI:10.1099/ijs.0.63724-0
*Jhaorihella*thermophila*							# DOI:10.1099/ijs.0.025817-0
*Loktanella*sediminilitoris*						# DOI:10.1099/ijs.0.049841-0
*Labrenzia*alexandrii*								# DOI:10.1099/ijs.0.64821-0
*Aurantimonas*coralicida*							# DOI:10.1099/ijs.0.02359-0
*Maricaulis*parjimensis*							# DOI:10.1099/ijs.0.02248-0  and  Abraham et al (1999) - Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundirnonas and Caulobacter
*Maricaulis*salignorans*							# DOI:10.1099/ijs.0.02248-0  and  Abraham et al (1999) - Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundirnonas and Caulobacter
*Maricaulis*washingtonensis*						# DOI:10.1099/ijs.0.02248-0  and  Abraham et al (1999) - Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundirnonas and Caulobacter
*Maricaulis*virginensis*							# DOI:10.1099/ijs.0.02248-0  and  Abraham et al (1999) - Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundirnonas and Caulobacter
*Maricaulis*maris*									# Abraham et al (1999) - Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundirnonas and Caulobacter
*Mucilaginibacter*gynuensi*							# DOI:10.1099/ijs.0.050153-0
*Henriciella*litoralis*								# DOI:10.1099/ijs.0.020396-0
*Arthrobacter*alkaliphilus*							# DOI:10.1099/ijs.0.65301-0
*Pelagibaca*bermudensis*							# DOI:10.1099/ijs.0.64063-0
*Mameliella*alba*									# DOI:10.1099/ijs.0.011437-0
*Martelella*radicis*								# DOI:10.1099/ijs.0.066373-0
*Martelella*BM9-1*									# DOI:10.1099/ijs.0.066373-0
*Oceanicaulis*alexandrii*							# DOI:10.1099/ijs.0.02635-0
*Zunongwangia*mangrovi*								# DOI:10.1099/ijs.0.053512-0
*Zunongwangia*P2E16*								# DOI:10.1099/ijs.0.053512-0
*Sufflavibacter*maritimus*							# Kwon et al (2007) - Sufflavibacter maritimus gen. nov., sp. nov., novel Flavobacteriaceae bacteria isolated from marine environments
*Thermoflexus*hugenholtzii*							# DOI:10.1099/ijs.0.055855-0
*Shewanella*electrodiphila*							# DOI:10.1099/ijs.0.000345
*Flavobacterium*limicola*							# DOI:10.1099/ijs.0.02369-0
*Nocardioidaceae*Nocardioides*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Costertonia*aggregata*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Costertonia*aggregata*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacillaceae*Geobacillus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*azotoformans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3; Pichinoty et al (1983) - Description of Bacillus azotoformans sp. nov.
*Microvirgula*aerodenitrificans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillum*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillum*elegans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Brachymonas*petroleovorans*						# DOI:10.1016/S0378-1097(03)00655-4
*Brachymonas*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Rhodoplanes*							# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Rhodoplanes*						# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodoplanes*roseus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sinorhizobium*fredii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sinorhizobium*meliloti*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Brachymonas*chironomi*								# DOI:10.1099/ijs.0.007211-0
*Pseudovibrio*denitrificans*						# DOI:10.1099/ijs.0.63107-0
*Betaproteobacteriales*Hydrogenophaga*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Hydrogenophaga*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Comamonadaceae*Brachymonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonas*nitrativorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Rhodoplanes*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Rhodoplanes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Dechloromonas*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Paenibacillus*anaericanus*							# DOI:10.1099/ijs.0.63484-0
*Flavobacterium*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Rhodocyclaceae*Thauera*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ferrimonas*futtsuensis*							# DOI:10.1099/ijs.0.64399-0
*Ferrimonas*marina*									# DOI:10.1099/ijs.0.63689-0
*Ferrimonas*senticii*								# DOI:10.1099/ijs.0.65074-0
*Marinobacter*lipolyticus*							# DOI:10.1099/ijs.0.02528-0
*Marinobacter*lutaoensis*							# DOI:10.1139/w03-032
*Alteromonadales*Marinobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Alteromonadaceae*Marinobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria. Legacy taxonomy
*Aquitalea*denitrificans*							# DOI:10.1099/ijs.0.002840-0
*Thiosphaera*pantotropha*							# DOI:10.1099/00221287-129-9-2847  and  Bell et al. (1991) - Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha
*Shewanella*woodyi*									# DOI:10.1099/00207713-47-4-1034
*Bacillus*licheniformis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pseudomonas*balearica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Bradyrhizobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Bradyrhizobium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Acidovorax*delafieldii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidovorax*temperans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomonas*adhaerens*								# DOI:10.1099/00207713-50-2-459
*Brachymonas*denitrificans*							# DOI:10.2323/jgam.41.99
*Aquaspirillaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Microvirgula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Azoarcus*indigens*									# Reinhold-hurek (1993) - Azoarcus gen, nov.,Nitrogen-Fixing Proteobacteria Associated with Roots of Kallar Grass (LeptochZoafusca (L.) Kunth), and Description of Two Species, Azoarcus indigens sp. nov. andhoarcus communis sp. nov.
*Azoarcus*communis*									# Reinhold-hurek (1993) - Azoarcus gen, nov.,Nitrogen-Fixing Proteobacteria Associated with Roots of Kallar Grass (LeptochZoafusca (L.) Kunth), and Description of Two Species, Azoarcus indigens sp. nov. andhoarcus communis sp. nov.
*Halomicroarcula*pellucida*							# DOI:10.1099/ijs.0.049965-0
*Dinoroseobacter*shibae*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ruegeria*atlantica*								# DOI:10.2323/jgam.44.201
*Shewanella*vesiculosa*								# DOI:10.1099/ijs.0.000737-0
*Arcobacter*nitrofigilis*							# DOI:10.4056/sigs.912121
*Thiobacillus*perometaboli*							# DOI:10.1007/BF00406335
*Dyella*thiooxydans*								# DOI:10.1099/ijs.0.022012-0
*Diaphorobacter*oryzae*								# DOI:10.1099/ijs.0.001669-0
*Thiomonas*bhubaneswarensis*						# DOI:10.1099/ijs.0.007120-0
*Starkeya*novella*									# DOI:10.1007/s002030000241  and  Taylor et al (1969) - New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus
*Thiobacillus*novellus*								# DOI:10.1007/s002030000241  and  Taylor et al (1969) - New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus
*Bosea*5Z-2111*										# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Xanthobacter*TV6-2B*								# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Xanthobacter*Z2A-6A*								# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Xanthobacter*Z4A-2A*								# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Ancylobacter*aquaticus*							# Stubner (1998) - Sulfur Oxidation in Rice Field Soil: Activity, Enumeration, Isolation and Characterization of Thiosulfate-oxidizing Bacteria
*Halobacterium*volcanii*							# DOI:10.1007/BF00447326
*Pseudomonas*libanensis*							# Dabboussi et al (1999) - Pseudornonas libanensis sp. nov., a new species isolated from Lebanese spring waters
*Thiomonas*SS*										# DOI:10.1111/j.1472-765X.2004.01615.x
*Thiomonas*arsenivorans*							# DOI:10.1007/s10482-005-9013-2
*Acidicaldus*organivorus*							# DOI:10.1007/s00203-006-0087-7
*Rhizobiaceae*SDB1*									# DOI:10.1007/s12275-009-0279-3
*Ancylobacter*OL-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Thiobacillus*S-1*									# DOI:10.1111/j.1574-6941.2008.00569.x
*Hydrogenophaga*CL-3*								# DOI:10.1111/j.1574-6941.2008.00569.x
*Rhodocyclales*DAO1*								# DOI:10.1111/j.1462-2920.2005.00977.x
*Polaromonas*vacuolata*								# Irgens et al (1996) - Polaromonas vacuolata gen. nov., sp. nov., a Psychrophilic, Marine, Gas Vacuolate Bacterium from Antarctica
*Polaromonas*naphthalenivorans*						# DOI:10.1099/ijs.0.02636-0
*Herminiimonas*arsenicoxydans*						# DOI:10.1099/ijs.0.64308-0
*Sulfobacillus*disulfidooxidans*					# DOI:10.1099/00207713-46-4-1056
*Alicyclobacillus*disulfidooxidans*					# DOI:10.1099/00207713-46-4-1056  and  DOI:10.1099/ijs.0.63300-0
*Alicyclobacillus*tolerans*							# DOI:10.1099/ijs.0.63300-0
*Xanthomonadaceae*Arenimonas*						# DOI:10.1099/ijs.0.64457-0  and  DOI:10.1099/ijs.0.000201
*Pseudolabrys*taiwanensis*							# DOI:10.1099/ijs.0.64124-0
*Lutibaculum*baratangense*							# DOI:10.1099/ijs.0.036350-0
*Bauldia*litoralis*									# DOI:10.1099/ijs.0.018234-0
*Bauldia*consociata*								# DOI:10.1099/ijs.0.018234-0
*Mycoplana*ramosa*									# DOI:10.1099/00207713-40-4-434
*Mycoplana*segnis*									# DOI:10.1099/00207713-40-4-434
*Mariniphaga*anaerophila*							# DOI:10.1099/ijs.0.066274-0
*Thermaerobacter*composti*							# DOI:10.2323/jgam.55.323
*Pisciglobus*halotolerans*							# DOI:10.1099/ijs.0.025981-0
*Ignavigranum*ruoffiae*								# DOI:10.1099/00207713-49-1-97
*Facklamia*ignava*									# Collins, Lawson et al (1998) - Facklamia ignava sp. nov., Isolated from Human Clinical Specimens
*Sporosarcina*contaminans*							# DOI:10.1099/ijs.0.014423-0
*Sporosarcina*thermotolerans*						# DOI:10.1099/ijs.0.014423-0
*Planococcaceae*Domibacillus*						# DOI:10.1099/ijs.0.068924-0  and  DOI:10.1099/ijs.0.064295-0
*Domibacillus*enclensis*							# DOI:10.1099/ijs.0.068924-0
*Domibacillus*robiginosus*							# DOI:10.1099/ijs.0.044396-0
*Virgibacillus*pantothenticus*						# DOI:10.1099/00207713-49-3-1083
*Moheibacter*sediminis*								# DOI:10.1099/ijs.0.060178-0
*Intrasporangium*mesophilum*						# DOI:10.1099/ijs.0.029934-0
*Phycicoccus*soli*									# DOI:10.1099/ijs.0.000265
*Aquipuribacter*nitratireducens*					# DOI:10.1099/ijs.0.000269
*Ornithinibacter*aureus*							# DOI:10.1099/ijs.0.022806-0
*Humibacillus*xanthopallidus*						# DOI:10.1099/ijs.0.65042-0
*Pyrinomonas*methylaliphatogenes*					# DOI:10.1099/ijs.0.055079-0
*Blastocatella*fastidiosa*							# DOI:10.1016/j.syapm.2012.11.002
*Meiothermus*rufus*									# DOI:10.1016/j.syapm.2009.05.002
*Rhabdothermus*arcticus*							# DOI:10.1099/ijs.0.027839-0
*Oceanithermus*desulfurans*							# DOI:10.1099/ijs.0.02962-0
*Fodinibacter*luteus*								# DOI:10.1099/ijs.0.006882-0
*Intrasporangiaceae*Oryzihumus*						# DOI:10.1099/ijs.0.63799-0  and  DOI:10.1099/ijs.0.060897-0
*Bacillus*selenatarsenatis*							# DOI:10.1099/ijs.0.64667-0
*Alkalimarinus*sediminis*							# DOI:10.1099/ijsem.0.000446
*Sulfurospirillum*arcachonense*						# DOI:10.1099/00207713-47-4-1212
*Oceaniovalibus*guishaninsula*						# DOI:10.1007/s00284-012-0081-z
*Pontibaca*methylaminivorans*						# DOI:10.1099/ijs.0.020172-0
*Sulfitobacter*pacificus*							# DOI:10.1007/s10482-015-0407-5
*Tateyamaria*pelophila*								# DOI:10.1099/ijs.0.013524-0
*Tateyamaria*omphalii*								# DOI:10.1099/ijs.0.013524-0
*Parvibaculum*lavamentivorans*						# DOI:10.1099/ijs.0.03020-0
*Sulfitobacter*mediterraneus*						# Pukall, Buntefuss et al (1999) - Sulfitobacter rnediterraneus sp. nov., a new sulfite-oxidizing member of the a-Proteobacteria
*Sulfitobacter*brevis*								# DOI:10.1099/00207713-50-1-303
*Staleya*guttiformis*								# DOI:10.1099/00207713-50-1-303
*Acidianus*manzaensis*								# DOI:10.1007/s00284-006-0151-1
*Thiomonas*islandica*								# DOI:10.1099/ijs.0.015511-0
*Thioglobus*singularis*								# DOI:10.1038/ismej.2012.78
*Sulfurihydrogenibium*kristjanssonii*				# DOI:10.1099/ijs.0.65570-0
*Sulfurihydrogenibium*yellowstonense*				# DOI:10.1099/ijs.0.63708-0
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341
*Zobellella*aerophila*								# DOI:10.1099/ijs.0.027466-0
*Limnobacter*litoralis*								# DOI:10.1099/ijs.0.020206-0
*Limnobacter*thiooxidans*							# DOI:10.1099/00207713-51-4-1463
*Wenxinia*marina*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Tropicibacter*multivorans*							# DOI:10.1099/ijs.0.030973-0
*Rhodobacteraceae*Thalassobius*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodobacteraceae*Shimia*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Shimia*haliotis*									# DOI:10.1099/ijs.0.053140-0
*Sediminimonas*qiaohouensis*						# DOI:10.1099/ijs.0.006965-0
*Silicibacter*lacuscaerulensis*						# DOI:10.1007/s007920050020
*Rhodobacteraceae*Ruegeria*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rubellimicrobium*roseum*							# DOI:10.1007/s10482-010-9452-2
*Pelagicola*litoralis*								# DOI:10.1099/ijs.0.65820-0
*Pannonibacter*phragmitetus*						# DOI:10.1099/ijs.0.02356-0
*Oceanicola*nitratireducens*						# DOI:10.1099/ijs.0.016311-0
*Oceanicola*nanhaiensis*							# DOI:10.1099/ijs.0.64532-0
*Oceanicola*marinus*								# DOI:10.1099/ijs.0.65020-0
*Oceanicola*litoreus*								# DOI:10.1007/s10482-012-9867-z
*Nereida*ignava*									# DOI:10.1099/ijs.0.63442-0
*Nautella*italica*									# DOI:10.1099/ijs.0.002683-0
*Rhodobacteraceae*Marivita*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Marivita*geojedonensis*							# DOI:10.1099/ijs.0.039065-0
*Loktanella*vestfoldensis*							# DOI:10.1099/ijs.0.03006-0
*Loktanella*fryxellensis*							# DOI:10.1099/ijs.0.03006-0
*Loktanella*salsilacus*								# DOI:10.1099/ijs.0.03006-0
*Loktanella*agnita*									# DOI:10.1099/ijs.0.63461-0
*Loktanella*rosea*									# DOI:10.1099/ijs.0.63461-0
*Loktanella*soesokkakensis*							# DOI:10.1007/s10482-013-9962-9
*Loktanella*cinnabarina*							# DOI:10.1099/ijs.0.043174-0
*Loktanella*hongkongensis*							# DOI:10.1099/ijs.0.63294-0
*Loktanella*pyoseonensis*							# DOI:10.1099/ijs.0.011072-0
*Rhodobacteraceae*Litoreibacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Labrenzia*alexandri*								# DOI:10.1099/ijs.0.64821-0
*Labrenzia*aggregata*								# DOI:10.1099/ijs.0.64821-0
*Labrenzia*marina*									# DOI:10.1099/ijs.0.64821-0
*Labrenzia*alba*									# DOI:10.1099/ijs.0.64821-0
*Hwanghaeicola*aestuarii*							# DOI:10.1099/ijs.0.021048-0
*Huaishuia*halophila*								# DOI:10.1099/ijs.0.025536-0
*Hasllibacter*halocynthiae*							# DOI:10.1099/ijs.0.028738-0
*Thioclava*dalianensis*								# DOI:10.1099/ijs.0.046094-0
*Citreimonas*salinaria*								# DOI:10.1099/ijs.0.64373-0
*Rhodobacteraceae*Ketogulonicigenium*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodobacteraceae*Jannaschia*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodobacteraceae*Dinoroseobacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodobacteraceae*Citreimonas*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodobacteraceae*Citreicella*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Celeribacter*marinus*								# DOI:10.1099/ijs.0.060673-0
*Celeribacter*neptunius*							# DOI:10.1099/ijs.0.014159-0
*Hoeflea*halophila*									# DOI:10.1007/s10482-013-9876-6
*Nitratireductor*kimnyeongensis*					# DOI:10.1099/ijs.0.65734-0
*Hoeflea*marina*									# DOI:10.1099/ijs.0.63291-0
*Amorphus*suaedae*									# DOI:10.1099/ijs.0.048959-0
*Amorphus*coralli*									# DOI:10.1099/ijs.0.65462-0
*Marinilactibacillus*piezotolerans*					# DOI:10.1099/ijs.0.63236-0
*Exiguobacterium*profundum*							# DOI:10.1099/ijs.0.64639-0
*Pseudomonas*bauzanensis*							# DOI:10.1099/ijs.0.026104-0
*Bacillus*megaterium*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*flexus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*soli*										# DOI:10.1099/ijs.0.02723-0
*Bacillus*drentensis*								# DOI:10.1099/ijs.0.02723-0
*Bacillus*bataviensis*								# DOI:10.1099/ijs.0.02723-0
*Tamlana*agarivorans*								# DOI:10.1099/ijs.0.65704-0
*Snuella*lapsa*										# DOI:10.1099/ijs.0.027458-0
*Siansivirga*zeaxanthinifaciens*					# DOI:10.1111/j.1574-6968.2012.02596.x
*Aquibacter*zeaxanthinifaciens*						# DOI:10.1099/ijs.0.052621-0
*Salinimicrobium*xinjiangense*						# DOI:10.1099/ijs.0.65297-0
*Salinimicrobium*marinum*							# DOI:10.1099/ijs.0.019166-0
*Hydrotalea*sandarakina*							# DOI:10.1099/ijs.0.034496-0
*Pseudozobellia*thermophila*						# DOI:10.1099/ijs.0.004143-0
*Meridianimaribacter*flavus*						# DOI:10.1099/ijs.0.009845-0
*Gillisia*sandarakina*								# DOI:10.1099/ijs.0.63527-0
*Subsaximicrobium*wynnwilliamsii*					# DOI:10.1099/ijs.0.63527-0
*Subsaximicrobium*saxinquilinus*					# DOI:10.1099/ijs.0.63527-0
*Subsaxibacter*broadyi*								# DOI:10.1099/ijs.0.63527-0
*Lacinutrix*copepodicola*							# DOI:10.1099/ijs.0.63527-0
*Gillisia*hiemivivida*								# DOI:10.1099/ijs.0.63527-0
*Lacinutrix*algicola*								# DOI:10.1099/ijs.0.65799-0
*Lacinutrix*mariniflava*							# DOI:10.1099/ijs.0.65799-0
*Gelidibacter*algens*								# DOI:10.1099/00207713-47-3-670
*Gelidibacter*mesophilus*							# DOI:10.1099/00207713-52-4-1325
*Flavivirga*jejuensis*								# DOI:10.1099/ijs.0.033605-0
*Flavivirga*amylovorans*							# DOI:10.1099/ijs.0.033605-0
*Azospirillum*soli*									# DOI:10.1099/ijsem.0.000618
*Azospirillum*fermentarium*							# DOI:10.1099/ijs.0.050872-0
*Cellvibrio*diazotrophicus*							# DOI:10.1099/ijs.0.054817-0
*Agromonas*oligotrophica*							# DOI:10.1128/AEM.00009-13  and  DOI:10.1007/BF00399322
*Bradyrhizobium*oligotrophicum*						# DOI:10.1128/AEM.00009-13  and  DOI:10.1007/BF00399322
*Azoarcus*olearius*									# DOI:10.1099/ijs.0.050609-0
*Azospirillum*humicireducens*						# DOI:10.1099/ijs.0.046813-0
*Mangrovibacterium*diazotrophicum*					# DOI:10.1099/ijs.0.052779-0
*Hoeflea*olei*										# DOI:10.1099/ijs.0.000277
*Burkholderia*heleia*								# DOI:10.1099/ijs.0.015198-0
*Croceitalea*eckloniae*								# DOI:10.1099/ijs.0.65697-0
*Croceitalea*dokdonensis*							# DOI:10.1099/ijs.0.65697-0
*Bacteroidetes*Gracilimonas*						# DOI:10.1099/ijs.0.005512-0  and  DOI:10.1099/ijs.0.052340-0
*Balneola*alkaliphila*								# DOI:10.1099/ijs.0.65555-0
*Longimonas*halophila*								# DOI:10.1099/ijs.0.000247
*Rubrivirga*marina*									# DOI:10.1099/ijs.0.046318-0
*Rubricoccus*marinus*								# DOI:10.1099/ijs.0.026294-0
*Gaiella*occulta*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria
*Actinobacteria*Rubrobacter*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria
*Rubrobacteriaceae*Rubrobacter*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria. Legacy taxonomy
*Pseudonocardiaceae*Crossiella*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Pseudonocardiaceae*Actinophytocola*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Yonghaparkia*alkaliphila*							# DOI:10.1099/ijs.0.64258-0
*Propionibacteriaceae*Friedmanniella*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Nitriliruptor*alkaliphilus*						# DOI:10.1099/ijs.0.002204-0
*Yonghaparkia*alkaliphila*							# DOI:10.1099/ijs.0.64258-0
*Labedella*gwakjiensis*								# DOI:10.1099/ijs.0.64591-0
*Pontimonas*salivibrio*								# DOI:10.1099/ijs.0.043661-0
*Pleomorphomonas*diazotrophica*						# DOI:10.1099/ijs.0.044461-0
*Antricoccus*suffuscus*								# DOI:10.1099/ijsem.0.000588
*Jatrophihabitans*soli*								# DOI:10.1099/ijs.0.000173
*Jatrophihabitans*fulvus*							# DOI:10.1099/ijsem.0.000443
*Salinisphaera*shabanensis*							# DOI:10.1007/s00792-002-0292-5
*Salinisphaera*orenii*								# DOI:10.1099/ijs.0.028647-0
*Salinisphaera*dokdonensis*							# DOI:10.1099/ijs.0.010058-0
*Salinisphaera*halophila*							# DOI:10.1099/ijs.0.035584-0
*Salinisphaera*hydrothermalis*						# DOI:10.1099/ijs.0.005058-0
*Rheinheimera*texasensis*							# DOI:10.1099/ijs.0.65045-0
*Rheinheimera*perlucida*							# DOI:10.1099/ijs.0.64172-0
*Tistrella*mobilis*									# DOI:10.2323/jgam.48.335
*Humitalea*rosea*									# DOI:10.1099/ijs.0.043018-0
*Tistrella*bauzanensis*								# DOI:10.1099/ijs.0.026930-0
*Thalassospira*profundimaris*						# DOI:10.1099/ijs.0.64544-0
*Thalassospira*lucentensis*							# DOI:10.1099/ijs.0.01928-0
*Cohaesibacter*gelatinilyticus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Martelella*mangrovi*								# DOI:10.1099/ijs.0.066373-0
*Martelella*BM9-1 *									# DOI:10.1099/ijs.0.066373-0
*Aurantimonas*frigidaquae*							# DOI:10.1099/ijs.0.65421-0
*Aurantimonas*ureilytica*							# DOI:10.1099/ijs.0.65035-0
*Ponticaulis*koreensis*								# DOI:10.1099/ijs.0.011114-0
*Henriciella*marina*								# DOI:10.1007/s12275-008-0290-0
*Algisphaera*agarilytica*							# DOI:10.1007/s10482-013-0076-1
*Gemmatimonas*aurantiaca*							# DOI:10.1099/ijs.0.02520-0
*Cytophagales*Persicobacter*						# DOI:10.1099/ijs.0.016113-0
*Saprospiraceae*Saprospira*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Saprospiraceae*Haliscomenobacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Saprospiraceae*Aureispira*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Saprospiraceae*Rubidimonas*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Saprospiraceae*Portibacter*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Saprospiraceae*Lewinella*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Chitinophagaceae*Ferruginibacter*					# DOI:10.1099/ijs.0.000311
*Flavitalea*populi*									# DOI:10.1099/ijs.0.025221-0
*Ferruginibacter*yonginensis*						# DOI:10.1099/ijs.0.057083-0
*Mesoflavibacter*aestuarii*							# DOI:10.1099/ijs.0.061085-0
*Mesoflavibacter*sabulilitoris*						# DOI:10.1099/ijs.0.067223-0
*Mesoflavibacter*zeaxanthinifaciens*				# DOI:10.1016/j.syapm.2006.12.003  and  DOI:10.1128/JB.05793-11
*Jejudonia*soesokkakensis*							# DOI:10.1007/s10482-013-9934-0
*Tamlana*sedimentorum*								# DOI:10.1099/ijs.0.061812-0
*Altuibacter*lentus*								# DOI:10.1007/s10482-013-0037-8
*Aureitalea*marina*									# DOI:10.1099/ijs.0.031450-0
*Marixanthomonas*ophiurae*							# DOI:10.1099/ijs.0.64662-0
*Croceibacter*atlanticus*							# DOI:10.1078/072320203322337344
*Alphaproteobacteria*Thalassospira*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodospirillaceae*Thalassospira*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy
*Ferrovibrio*denitrificans*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhizobiales*Microvirga*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Methylobacteriaceae*Microvirga*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy
*Dyella*marensis*									# DOI:10.1099/ijs.0.000968-0
*Dyella*jiangningensis*								# DOI:10.1099/ijs.0.048470-0
*Dyella*japonica*									# DOI:10.1099/ijs.0.63377-0
*Polyangiaceae*Chondromyces*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2;  and  Reichenbach (1999) - The ecology of the myxobacteria
*Chondromyces*crocatus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2;  and  Reichenbach (1999) - The ecology of the myxobacteria
*Nannocystis*exedens*								# Taylor and Draughon (2001) - Nannocystis exedens: A potential biocompetitive agent against Aspergillus flavus and Aspergillus parasiticus*
*Cystobacteraceae*Cystobacter*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Anaeromyxobacter*dehalogenans*						# DOI:10.1128/AEM.68.2.893–900.2002
*Vogesella*indigofera*								# DOI:10.1099/00207713-47-1-19
*Elioraea*tepidiphila*								# DOI:10.1099/ijs.0.65294-0
*Dinoroseobacter*shibae*							# DOI:10.1099/ijs.0.63511-0
*Rubritepida*flocculans*							# DOI:10.1078/0723-2020-00116
*Rhodovastum*atsumiense*							# DOI:10.2323/jgam.55.43
*Acidisoma*sibiricum*								# DOI:10.1099/ijs.0.009209-0
*Rhizomicrobium*electricum*							# DOI:10.1099/ijs.0.023580-0
*Rhizobium*herbae*									# DOI:10.1099/ijs.0.024943-0
*Ochrobactrum*tritici*								# DOI:10.1099/00207713-50-6-2207
*Ochrobactrum*oryzae*								# DOI:10.1099/ijs.0.63934-0
*Martelella*mediterranea*							# DOI:10.1099/ijs.0.63438-0
*Aureimonas*ferruginea*								# DOI:10.1099/ijs.0.047431-0
*Aureimonas*rubiginis*								# DOI:10.1099/ijs.0.047431-0
*Cohnella*ferri*									# DOI:10.1007/s00284-011-9917-1
*Cohnella*boryungensis*								# DOI:10.1007/s10482-011-9691-x
*Ammoniphilus*oxalaticus*							# DOI:10.1099/00207713-48-1-151
*Alicyclobacillaceae*Alicyclobacillus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Mucilaginibacter*herbaticus*						# DOI:10.1099/ijs.0.038398-0
*Arcticibacter*svalbardensis*						# DOI:10.1099/ijs.0.044420-0
*Segetibacter*koreensis*							# DOI:10.1099/ijs.0.64803-0
*Actinopolymorpha*pittospori*						# DOI:10.1099/ijs.0.029579-0
*Stackebrandtia*nassauensis*						# DOI:10.1099/ijs.0.63496-0
*Plantactinospora*endophytica*						# DOI:10.1099/ijs.0.036459-0
*Planosporangium*flavigriseum*						# DOI:10.1099/ijs.0.65211-0
*Micromonosporaceae*Pilimelia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Phytohabitans*houttuyneae*							# DOI:10.1099/ijs.0.037747-0
*Phytohabitans*rumicis*								# DOI:10.1099/ijs.0.037747-0
*Phytohabitans*flavus*								# DOI:10.1099/ijs.0.037747-0
*Luedemannella*flava*								# DOI:10.2323/jgam.53.39
*Luedemannella*helvata*								# DOI:10.2323/jgam.53.39
*Micromonosporaceae*Hamadaea*						# DOI:10.1099/ijs.0.65548-0
*Micromonosporaceae*Dactylosporangium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonosporaceae*Catellatospora*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Catellatospora*bangladeshensis*					# DOI:10.1099/ijs.0.63862-0
*Catellatospora*coxensis*							# DOI:10.1099/ijs.0.63862-0
*Catellatospora*chokoriensis*						# DOI:10.1099/ijs.0.63862-0
*Catellatospora*methionotrophica*					# DOI:10.1099/ijs.0.63862-0
*Myceligenerans*halotolerans*						# DOI:10.1099/ijs.0.024091-0
*Zhihengliuella*alba*								# DOI:10.1099/ijs.0.007344-0
*Tersicoccus*phoenicis*								# DOI:10.1099/ijs.0.047134-0
*Sinomonas*albida*									# DOI:10.1099/ijs.0.030361-0
*Corynebacterium*cyclohexanicum*					# Tokuyama and Kaneda (1973) - Corynebacterium cyclohexanicum n. sp.: a cyclohexanecarboxylic acid utilizing bacterium
*Arthrobacter*rhombi*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*nitroguajacolicus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*flavus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agreia*pratensis*									# DOI:10.1099/ijs.0.02138-0  and  DOI:10.1099/ijs.0.02664-0
*Oryzihumus*leptocrescens*							# DOI:10.1099/ijs.0.63799-0
*Lapillicoccus*jejuensis*							# DOI:10.1099/ijs.0.64911-0
*Humibacillus*xanthopallidu*						# DOI:10.1099/ijs.0.65042-0
*Helcobacillus*massiliensis*						# DOI:10.1099/ijs.0.003319-0
*Micrococcales*Cellulosimicrobium*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Kineosporiaceae*Kineosporia*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Angustibacter*aerolatus*							# DOI:10.1099/ijs.0.042218-0
*Glycomyces*harbinensis*							# DOI:10.1099/00207713-35-4-417
*Glycomyces*rutgersensis*							# DOI:10.1099/00207713-35-4-417
*Geodermatophilaceae*Blastococcus*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Jatrophihabitans*endophyticus*						# DOI:10.1099/ijs.0.039685-0
*Aciditerrimonas*ferrireducens*						# DOI:10.1099/ijs.0.023044-0
*Telmatobacter*bradus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Acidobacteriales*Granulicella*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Koribacter*versatilis*Ellin345*					# DOI:10.1128/AEM.69.12.7210–7215.2003  and  DOI:10.1046/j.1462-2920.2002.00352.x
*Bryobacter*aggregatus*								# DOI:10.1099/ijs.0.013250-0
*Telmatobacter*bradus*								# DOI:10.1099/ijs.0.029629-0
*Bryocella*elongata*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Acidobacteriales*Acidicapsa*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Proteobacteria*Reyranella*							# DOI:10.1099/ijs.0.025775-0  and  DOI:10.1099/ijs.0.045922-0
*Rhodospirillales*Reyranella*						# DOI:10.1099/ijs.0.025775-0  and  DOI:10.1099/ijs.0.045922-0 . Legacy taxonomy
*Alphaproteobacteria*Elstera*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhodospirillaceae*Elstera*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria. Legacy taxonomy
*Acetobacteraceae*Acidicaldus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Tumebacillus*luteolus*								# DOI:10.1099/ijsem.0.000549
*Tumebacillus*algifaecis*							# DOI:10.1099/ijs.0.000240
*Tumebacillus*lipolyticus*							# DOI:10.1099/ijsem.0.000576
*Tumebacillus*flagellatus*							# DOI:10.1099/ijs.0.045351-0
*Tumebacillus*ginsengisoli*							# DOI:10.1099/ijs.0.023358-0
*Tumebacillus*permanentifrigoris*					# DOI:10.1099/ijs.0.65101-0
*Flavobacteriales*Dokdonia*							# DOI:10.1099/ijs.0.63817-0  and  DOI:10.1099/ijs.0.035253-0
*Flavobacteriaceae*Dokdonia*						# DOI:10.1099/ijs.0.63817-0  and  DOI:10.1099/ijs.0.035253-0 . Legacy taxonomy
*Patulibacter*										# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Conexibacter*arvalis*								# DOI:10.1099/ijs.0.036095-0
*Conexibacter*woesei*								# DOI:10.1099/ijs.0.02400-0
*Thermomonosporaceae*Actinoallomurus*				# DOI:10.1099/ijs.0.006858-0
*Actinoallomurus*oryzae*							# DOI:10.1099/ijs.0.022509-0
*Actinoallomurus*liliacearum*						# DOI:10.1038/ja.2012.31
*Actinoallomurus*vinaceus*							# DOI:10.1038/ja.2012.31
*Allocatelliglobosispora*scoriae*					# DOI:10.1099/ijs.0.020313-0
*Micromonosporaceae*Rugosimonospora*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Rugosimonospora*acidiphila*						# DOI:10.1099/ijs.0.010231-0
*Gammaproteobacteria*Marinicella*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria
*Ruegeria*pelagia*									# DOI:10.1099/ijs.0.65032-0
*Ruegeria*mobilis*									# DOI:10.1099/ijs.0.64572-0
*Pseudoruegeria*sabulilitoris*						# DOI:10.1099/ijs.0.066258-0
*Pseudoruegeria*limi*								# DOI:10.1007/s10482-014-0158-8
*Pseudoruegeria*aquimaris*							# DOI:10.1099/ijs.0.64594-0
*Rhizobiales*Mesorhizobium*							# DOI:10.1099/00207713-47-3-895
*Phyllobacteriaceae*Mesorhizobium*					# DOI:10.1099/00207713-47-3-895 . Legacy taxonomy
*Sulfuriferula*multivorans*							# DOI:10.1099/ijs.0.000129
*Bacillus*zhanjiangensis*							# DOI:10.1007/s10482-010-9510-9
*Planococcus*dechangensis*							# DOI:10.1007/s10482-015-0399-1
*Rheinheimera*baltica*								# DOI:10.1099/ijs.0.02151-0
*Alteromonas*infernus*								# DOI:10.1046/j.1365-2672.1997.00125.x
*Glaciecola*polaris*								# DOI:10.1099/ijs.0.63123-0
*Halobaculum*gomorrense*							# Oren et al. (1995) - Halobaculum gomorrense gen. nov., sp. nov., a Novel Extremely Halophilic Archaeon from the Dead Sea
*Rubrivivax*gelatinosus*							# DOI:10.1128/JB.00511-12  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Roseicyclus*mahoneyensis*							# DOI:10.1007/s11120-011-9718-1  and  DOI:10.1099/ijs.0.63195-0
*Arhodomonas*aquaeolei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclus*purpureus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclus*tenuis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobium*orientis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Chloroflexus*aurantiacus*							# DOI:10.1007/BF00446302
*Arhodomonas*recens*								# DOI:10.1134/S002626171205013X
*Ardenticatena*maritima*							# DOI:10.1099/ijs.0.046532-0
*Bacillus*stamsii*									# DOI:10.1016/j.syapm.2015.06.004
*Ectothiorhodospira*salini*							# DOI:10.2323/jgam.56.313
*Halorubrum*rubrum*									# DOI:10.1007/s10482-013-0002-6
*Rhodovulum*tesquicola*								# DOI:10.1099/ijs.0.035857-0
*Ferrimonas*balearica*								# DOI:10.4056/sigs.1161239
*Magnetospirillum*aberrantis*						# Gorlenko et al (2011) - Magnetospirillum aberrantis sp. nov., a New Freshwater Bacterium with Magnetic Inclusions
*Nocardioides*mesophilus*							# DOI:10.1099/ijs.0.019059-0
*Rhodovulum*imhoffii*								# DOI:10.1099/ijs.0.64470-0
*Desertibacter*roseus*								# DOI:10.1099/ijs.0.021246-0
*Tistlia*consotensis*								# DOI:10.1099/ijs.0.010926-0
*Arcobacter*mytili*									# DOI:10.1099/ijs.0.003749-0
*Escherichia*coli*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Magnetospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillaceae*Magnetospirillum*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Shewanellaceae*Shewanella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadaceae*Shewanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Citrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Citrobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiaceae*Sinorhizobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Achromobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcaligenaceae*Achromobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Bradyrhizobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Bradyrhizobium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Cytophagaceae*Cytophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidetes*Adhaeribacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Adhaeribacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidetes*Dyadobacter*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Dyadobacter*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Cytophagaceae*Effluviibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chthoniobacter*flavus*								# DOI:10.1128/AEM.70.10.5875-5881.2004
*Bryobacter*aggregatus*								# DOI:10.1099/ijs.0.013250-0
*Bradyrhizobiaceae*Blastobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Stella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Stella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Acetobacteraceae*Roseomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Roseococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Acetobacteraceae*Gluconobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Gluconacetobacter*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Craurococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Acidomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Acidocella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Acidisphaera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Acidiphilium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Acetobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Hyphomicrobium*						# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Hyphomicrobium*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Ancalomicrobium*						# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Ancalomicrobium*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Proteobacteria*Aquabacter*							# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Aquabacter*						# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Proteobacteria*Cucumibacter*						# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Cucumibacter*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Devosia*								# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Devosia*							# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Proteobacteria*Dichotomicrobium*					# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Dichotomicrobium*				# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Proteobacteria*Filomicrobium*						# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Filomicrobium*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Maritalea*								# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Maritalea*						# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Methylorhabdus*						# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Methylorhabdus*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Pedomicrobium*							# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Pedomicrobium*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Pelagibacterium*						# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Pelagibacterium*					# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Prosthecobacterium*					# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Prosthecobacterium*				# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Seliberia*								# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Seliberia*						# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Rhizobiales*Vasilyevaea*							# DOI:10.1007/978-3-642-30197-1_257
*Hyphomicrobiaceae*Vasilyevaea*						# DOI:10.1007/978-3-642-30197-1_257 . Legacy taxonomy
*Telmatospirillum*siberiense*						# DOI:10.1016/j.syapm.2006.06.003
*Pelagibacterales*Pelagibacter*						# DOI:10.1038/ismej.2012.122
*SAR11 clade*										# DOI:10.1038/ismej.2012.122
*SAR86 clade*										# DOI:10.1038/ismej.2011.189
*Marinobacterium*litorale*							# DOI:10.1099/ijs.0.64892-0
*Alteromonadaceae*Marinobacterium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Oceanospirillaceae*								# DOI:10.1007/0-387-28022-7_8
*Oceanospirillales*									# Munn (2011) - Marine Microbiology, chapter 4
*Azotobacter*										# Munn (2011) - Marine Microbiology, chapter 4
*Caulobacter*										# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Asticcacaulis*										# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Dichotomicrobium*									# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Ancalomicrobium*									# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Labrys*											# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Pedomicrobium*										# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Hyphomonas*										# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Angulomicrobium*									# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Ensifer*											# Bergey (1994) - Bergey's Manual of Determinative Bacteriology, ISBN: 9780683006032
*Burkholderia*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Alpha, Beta, Delta, Epsilonproteobacteria
*Pseudoalteromonas*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Sphingomonadales*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Alpha, Beta, Delta, Epsilonproteobacteria
*Vibrionaceae*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Xanthobacter*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Alpha, Beta, Delta, Epsilonproteobacteria
*Nevskia*											# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Stenotrophomonas*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Pseudomonadaceae*Pseudomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Acidobacterium*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4, The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes
*Gordonia*											# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5, Actinobacteria
*Microbacteriaceae*Agromyces*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5, Actinobacteria
*Flavobacteriales*Tenacibaculum*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4, The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes
*Flavobacteriaceae*Tenacibaculum*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4, The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Legacy taxonomy
*Moraxellaceae*Acinetobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Kaistia*adipata*									# DOI:10.2323/jgam.50.249
*Subtercola*frigoramans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5, Actinobacteria
*Acidobacteriaceae*Terriglobus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Xanthomonadaceae*Xanthomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudonocardiaceae*Saccharopolyspora*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5, Actinobacteria
*Rhodobacteraceae*Paracoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Brevibacteriaceae*Brevibacterium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Flavobacteriales*Chryseobacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Chryseobacterium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flammeovirgaceae*Marivirga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Plesiocystis*pacifica*								# DOI:10.1099/ijs.0.02418-0
*Paenibacillaceae*Paenibacillus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sphingobacteriaceae*Pedobacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Amycolatopsis*australiensis*						# DOI:10.1099/ijs.0.64260-0
*Mucilaginibacter*composti*							# DOI:10.1007/s12275-011-1176-0
*Sediminibacter*furfurosus*							# DOI:10.1099/ijs.0.64628-0
*Andreprevotia*lacus*								# DOI:10.1099/ijs.0.009233-0
*Labrenzia*marina*									# DOI:10.1128/AEM.01724-06  and  DOI:10.1099/ijs.0.63735-0  and  DOI:10.1099/ijs.0.64821-0
*Alphaproteobacteria*Stappia*						# DOI:10.1128/AEM.01724-06
*Rhodobacteraceae*Stappia*							# DOI:10.1128/AEM.01724-06 . Legacy taxonomy
*Labrenzia*alba*									# DOI:10.1099/ijs.0.64821-0
*Chthoniobacteraceae*Chthoniobacter*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Gammaproteobacteria*Rhodanobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Xanthomonadaceae*Rhodanobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rubritaleaceae*Rubritalea*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Promicromonosporaceae*Cellulosimicrobium*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gammaproteobacteria*Alteromonadales*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Flammeovirgaceae*Flexithrix*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Acidothermaceae*Acidothermus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Flavobacteriales*Ulvibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Ulvibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Nocardiaceae*Gordonia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Planctomycetes*Blastopirellula*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Blastopirellula*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Winogradskyella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Winogradskyella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Robiginitalea*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Robiginitalea*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Microbacteriaceae*Frondihabitans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Planctomycetes*Isosphaera*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Isosphaera*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Nakamurellaceae*Nakamurella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryomorphaceae*Owenweeksia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Nakamurellaceae*Nakamurella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saprospiraceae*Aureispira*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Saprospiraceae*Lewinella*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidia*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Crocinitomicaceae*Crocinitomix*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Crocinitomix*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Pasteurellaceae*Haemophilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Verrucomicrobiales*Akkermansia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Tenericutes*Acholeplasmataceae*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Acholeplasma*Acholeplasmataceae*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Cyclobacteriaceae*Reichenbachiella*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Reichenbachiella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidetes*Roseivirga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Roseivirga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Planctomycetes*Rhodopirellula*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Rhodopirellula*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Micromonosporaceae*Spirilliplanes*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonosporaceae*Verrucosispora*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioidaceae*Nocardioides*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Flavobacteriales*Psychroserpens*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Psychroserpens*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Rhodocyclaceae*Thauera*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Zoogloea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Plesiocystis*pacifica*								# DOI:10.1099/ijs.0.02418-0
*Streptomycetaceae*Streptomyces*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Verrucomicrobiaceae*Prosthecobacter*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Cryomorpha*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rhodocyclaceae*Dechloromonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Dechlorosoma*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Flavobacteriales*Muricauda*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Muricauda*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Myroides*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Myroides*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Acanthopleuribacteraceae*Acanthopleuribacter*		# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryptosporangiaceae*Cryptosporangium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Geodermatophilaceae*Modestobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineosporia*aurantiaca*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Janibacter*anophelis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Ornithinicoccus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcaceae*Kocuria*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Yaniella*halotolerans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rarobacteraceae*Rarobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioidaceae*Marmoricola*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicicella*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardiaceae*Pseudonocardia*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Euzebyaceae*Euzebya*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Solirubrobacteraceae*Solirubrobacter*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cyclobacteriaceae*Algoriphagus*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cyclobacteriaceae*Fabibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Fabibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flammeovirgaceae*Flammeovirga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Aequorivita*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Aequorivita*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Aquimarina*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Aquimarina*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Bizionia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Bizionia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Cellulophaga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Cellulophaga*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Dokdonia*donghaensis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Elizabethkingia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Elizabethkingia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Flavobacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Flavobacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Formosa*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Formosa*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Gillisia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Gillisia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Gramella*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Gramella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Kordia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Kordia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Leeuwenhoekiella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Leeuwenhoekiella*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Lutibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Lutibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Maribacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Maribacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Nonlabens*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Nonlabens*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Ornithobacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Ornithobacterium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Persicivirga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Persicivirga*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Polaribacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Polaribacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Psychroflexus*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Psychroflexus*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Psychroserpens*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Psychroserpens*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Riemerella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Riemerella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Robiginitalea*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Robiginitalea*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Salegentibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Salegentibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Sandarakinotalea*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Sandarakinotalea*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Sediminicola*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Sediminicola*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Sejongia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Sejongia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Stenothermobacter*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Stenothermobacter*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Subsaxibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Subsaxibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Subsaximicrobium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Subsaximicrobium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Tenacibaculum*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Tenacibaculum*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Ulvibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Ulvibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Vitellibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Vitellibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Wautersiella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Wautersiella*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Weeksella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Weeksella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Yeosuana*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Yeosuana*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Zhouia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Zhouia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flavobacteriales*Zobellia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Zobellia*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Saprospiraceae*Haliscomenobacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Geobacillus*stearothermophilus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Beijerinckiaceae*Chelatococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Bosea*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Bosea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Phyllobacteriaceae*Amaricoccus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Amaricoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Amaricoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Phyllobacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Phyllobacteriaceae*Phyllobacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Alphaproteobacteria*Rhodobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobiaceae*Rhodobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodobacteraceae*Gemmobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Loktanella*tamlensis*								# DOI:10.1099/ijs.0.029462-0
*Maritimibacter*alkaliphilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Roseobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Roseovarius*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacteraceae*Sulfitobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Neisseria*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Azospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Azovibrio*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acinetobacter*radioresistens*						# Nishimura et al. (1988) - Acinetobacter radioresistens sp. nov. Isolated from Cotton and Soil
*Legionellaceae*Legionella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Moraxellaceae*Enhydrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Cycloclasticus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Cycloclasticus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Thiotrichaceae*Leucothrix*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Fangia*hongkongensis*								# DOI:10.1099/ijs.0.65156-0
*Xanthomonadaceae*Thermomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Mycoplasmataceae*Mycoplasma*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Puniceicoccaceae*Cerasicoccus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Puniceicoccaceae*Coraliomargarita*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Puniceicoccaceae*Pelagicoccus*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Gammaproteobacteria*Vitreoscilla*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Neisseriaceae*Vitreoscilla*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Planctomycetes*Singulisphaera*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Singulisphaera*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Proteobacteria*Comamonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Comamonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Proteobacteria*Leptothrix*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Leptothrix*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Proteobacteria*Sphaerotilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Sphaerotilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Pasteurellaceae*Pasteurella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Geobacillus*jurassicus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Rhodopseudomonas*palustris*						# Harwood et al. (1988) - Anaerobic and aerobic metabo- lism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris.
*Euryarchaeota*Haloferax*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Flavobacteriales*Sediminicola*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Sediminicola*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Bacteroidia*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Cyclobacteriaceae*Aquiflexum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cyclobacteriaceae*Belliella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Flammeovirga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidetes*Persicobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Persicobacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Rubritaleaceae*Rubritalea*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomyces*brasiliensis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetes*Schlesneria*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Schlesneria*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Sporichthyaceae*Sporichthya*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Jiangella*alba*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcaceae*Micrococcus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcaceae*Kocuria*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Georgenia*muralis*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Georgenia*thermotolerans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonadaceae*Cellulomonas*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermabacteraceae*Brachybacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermacoccaceae*Kytococcus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Janibacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Knoellia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Ornithinimicrobium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Terrabacter*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Tetrasphaera*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Microbacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Agromyces*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Cryobacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Curtobacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Gulosibacter*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Leifsonia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Salinibacterium*xinjiangense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonospora*sukumoe*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Isoptericola*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Xylanimicrobium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Xylanibacterium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonosporaceae*Xylanimonas*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Ruania*albidiflava*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonosporaceae*Micromonospora*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocatenispora*sera*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocatenispora*thailandica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonosporaceae*Actinoplanes*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonosporaceae*Couchioplanes*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinobacteria*Virgisporangium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Virgisporangium*Virgisporangium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Propionibacteriaceae*Brooklawnia*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Luteococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Microlunatus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Micropruina*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicicella*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propionicimonas*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Propioniferax*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tessaracoccus*bendigoensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioidaceae*Nocardioides*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioidaceae*Aeromicrobium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardiaceae*Actinosynnema*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardiaceae*Kibdelosporangium*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardiaceae*Kutzneria*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardiaceae*Saccharomonospora*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinobacteria*Streptoalloteichus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptoalloteichus*Streptoalloteichus*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Pseudonocardiaceae*Thermocrispum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomycetaceae*Streptomyces*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomycetaceae*Kitasatospora*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Streptosporangium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Acrocarpospora*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Microbispora*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Nonomuraea*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Planobispora*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Sphaerisporangium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangiaceae*Thermopolyspora*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsaceae*Nocardiopsis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsaceae*Thermobifida*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonosporaceae*Thermomonospora*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonosporaceae*Actinocorallia*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonosporaceae*Actinomadura*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriales*Atopobium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Coriobacteriaceae*Atopobium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Actinobacteria*Rubrobacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rubrobacteraceae*Rubrobacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Proteobacteria*Rhodospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Azospirillaceae*Azospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Azospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Phaeospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Phaeospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Rhodocista*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodocista*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Rhodovibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodovibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Roseospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Roseospira*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Roseospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Roseospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Azospirillales*Skermanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Skermanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracraurococcus*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Acetobacteraceae*Roseococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodobaca*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodovulum*				 		# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Proteobacteria*Roseibium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Roseibium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Alphaproteobacteria*Rhodothalassium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodothalassium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Sphingomonadaceae*Erythromonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Rhodopseudomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bradyrhizobiaceae*Rhodopseudomonas*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhizobiales*Blastochloris*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Blastochloris*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodomicrobium*vannielii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Rhodoplanes*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Rhodoplanes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Alphaproteobacteria*Rhodobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobiaceae*Rhodobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Rubrivivax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Comamonadaceae*Rubrivivax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodocyclaceae*Rhodocyclus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Sagittula*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiaceae*Agrobacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Micrococcaceae*Nesterenkonia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Flavobacteriales*Arenibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Arenibacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Moraxellaceae*Psychrobacter*						# Garrity, Brenner, Krieg and Staley (2010) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bacillaceae*Marinococcus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Planococcaceae*Planomicrobium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacterium*noricense*							# DOI:10.1007/s00792-004-0403-6
*Halobacteriales*Halobacterium*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halobacteriaceae*Halobacterium*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Euryarchaeota*Haloarcula*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halobacteriaceae*Haloarcula*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Haloarcula*Japonica*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Halococcus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halobacteriaceae*Halococcus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Halogranum*salarium*								# DOI:10.1016/j.syapm.2011.03.007
*Halolamina*pelagica*								# DOI:10.1099/ijs.0.026799-0
*Acidobacteriaceae*Edaphobacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Ilumatobacter*fluminis*							# Matsumoto et al (2009). Ilumatobacter fluminis gen. nov., sp. nov., a novel actinobacterium isolated from the sediment of an estuary
*Iamia*majanohamensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinospicaceae*Actinospica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*glaucum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*jeikeium*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*mycetoides*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*spheniscorum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*striatum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietziaceae*Dietzia*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolicicoccus*subflavus*							# DOI:10.1099/ijs.0.010546-0
*Mycobacterium*aichiense*							# DOI:10.1099/00207713-31-3-263
*Mycobacterium*austroafricanum*						# DOI:10.1099/00207713-33-3-460  and DOI:10.1007/s00253-005-0074-y
*Mycobacterium*bacteremicum*						# DOI:10.1128/JCM.00853-10
*Mycobacterium*brumae*								# DOI:10.1099/00207713-43-3-405
*Mycobacteriaceae*Mycobacterium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*Mycobacterium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Nocardiaceae*Nocardia*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*vinacea*									# DOI:10.3209/saj.15_1
*Nocardiaceae*Williamsia*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tsukamurellaceae*Tsukamurella*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryptosporangiaceae*Fodinicola*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Blastococcus*aggregatus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Blastococcus*jejuensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Blastococcus*saxobsidens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineosporiaceae*Kineococcus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudokineococcus*lusitanus*						# DOI:10.1099/ijs.0.026195-0
*Kineosporiaceae*Pseudokineococcus*					# DOI:10.1099/ijs.0.026195-0
*Demequina*aestuarii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Demequina*oxidasica*								# DOI:10.1099/ijs.0.024299-0
*Demequina*globuliformis*							# DOI:10.1099/ijs.0.024299-0
*Demequina*salsinemoris*							# DOI:10.1099/ijs.0.012617-0
*Demequina*lutea*									# DOI:10.1099/ijs.0.004929-0
*Demequinaceae*Lysinimicrobium*						# DOI:10.1099/ijs.0.035493-0
*Dermabacteraceae*Dermabacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermacoccaceae*Dermacoccus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Luteipulveratus*mongoliensis*						# DOI:10.1099/ijs.0.009936-0
*Rudaeicoccus*suwonensis*							# DOI:10.1099/ijs.0.043455-0
*Mobilicoccus*pelagius*								# DOI:10.2323/jgam.56.427
*Piscicoccus*intestinalis*							# DOI:10.2323/jgam.56.427
*Arsenicicoccus*bolidensis*							# DOI:10.1099/ijs.0.02918-0
*Arsenicicoccus*dermatophilus*						# DOI:10.1099/ijs.0.048546-0
*Marihabitans*asiaticum*							# DOI:10.1099/ijs.0.65210-0
*Ornithinibacter*aureus*							# DOI:10.1099/ijs.0.022806-0
*Intrasporangiaceae*Phycicoccus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*versicolor								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*baldri									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*casei									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*citreus									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*jejuensis								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*jenensis								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agrococcus*lahaulensis								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amnibacterium*kyonggiense*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Clavibacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Compostimonas*suwonensis*							# DOI:10.1099/ijs.0.036343-0
*Diaminobutyricimonas*aerilata*						# DOI:10.1007/s12275-012-2118-1
*Frigoribacterium*faeni*							# Kaempfer et al (2000). Frigoribacterium faeni gen. nov., sp. nov., a novel psychrophilic genus of the family Microbacteriaceae
*Microbacteriaceae*Gryllotalpicola*					# DOI:10.1099/ijs.0.034678-0
*Herbiconiux*moechotypicola*						# DOI:10.1099/ijs.0.028357-0
*Homoserinimonas*aerilata*							# DOI:10.1007/s12275-012-2096-3
*Microbacteriaceae*Leucobacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Microcella*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Microterricola*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Mycetocola*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Naasia*aerilata*									# DOI:10.1099/ijs.0.046599-0
*Zunongwangia*profunda*								# DOI:10.1186/1471-2164-11-247
*Salinisphaera*japonica*							# DOI:10.1099/ijs.0.047845-0
*Verrucomicrobiales*Verrucomicrobiaceae*			# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Verrucomicrobiaceae*Verrucomicrobium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Verrucomicrobia*Roseibacillus*						# DOI:10.1099/ijs.0.65520-0
*Verrucomicrobiaceae*Roseibacillus*					# DOI:10.1099/ijs.0.65520-0 . Legacy taxonomy
*Demequinaceae*Demequina*							# DOI:10.1099/ijs.0.024299-0  and  DOI:10.1099/ijs.0.64525-0
*Microbacteriaceae*Herbiconiux*						# DOI:10.1099/ijs.0.021352-0
*Cytophagales*Flammeovirgaceae*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Balneola*vulgaris*									# DOI:10.1099/ijs.0.64285-0
*Flavobacteriales*Actibacter*						# DOI:10.1099/ijs.0.65346-0
*Flavobacteriaceae*Actibacter*						# DOI:10.1099/ijs.0.65346-0 . Legacy taxonomy
*Joostella*marina*									# DOI:10.1099/ijs.0.65611-0
*Sediminibacter*furfurosus*							# DOI:10.1099/ijs.0.64628-0
*Marixanthomonas*ophiurae*							# DOI:10.1099/ijs.0.64662-0
*Flavobacteriales*Mesonia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Mesonia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Mesonia*phycicola*									# DOI:10.1099/ijs.0.011338-0
*Flavobacteriales*Olleya*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Olleya*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Lentisphaeraceae*Lentisphaera*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rhodobacteraceae*Albimonas*						# DOI:10.1099/ijs.0.049742-0  and  DOI:10.1099/ijs.0.65429-0
*Rhodobacteraceae*Lentibacter*						# DOI:10.1099/ijs.0.029868-0
*Rhodobacteraceae*Roseivivax*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thalassobius*gelatinovorus*						# DOI:10.1099/ijs.0.63842-0
*Granulosicoccus*antarcticus*						# Cho et al (2007). Granulosicoccaceae fam. nov., to Include Granulosicoccus antarcticus gen.nov., sp. nov., a Non-phototrophic, Obligately Aerobic Chemoheterotrophin the Order Chromatiales, Isolated from Antarctic Seawater
*Rhodobacter*sphaeroides*							# DOI:10.1146/annurev.micro.61.080706.093402
*Proteobacteria*Rhodospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillaceae*Rhodospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Sphingomonadaceae*Erythromonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sphingomonadaceae*Porphyrobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Roseococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sphingomonadaceae*Sandaracinobacter*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfolobaceae*Sulfolobus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sulfurococcus*yellowstonensis*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Alcaligenaceae*Alcaligenes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Blastobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderiaceae*Cupriavidus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Acidovorax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Ancylobacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Ancylobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Bacillus*schlegelii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*tusciae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3




invertebrate_parasites 			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
#(incomplete list)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# Wang (2013; 10.1074/mcp.M112.023986)
*Lysinibacillus*sphaericus*							# DOI:10.1016/j.jip.2011.11.008
*Bacillus*thuringiensis*							# Aronson et al. (1986) - Bacillus thuringiensis and related insect pathogens
*Brevibacillus*laterosporus*						# Ruiu et al. (2013) - Emerging entomopathogenic bacteria for insect pest management
*Chromobacterium*subtsugae*							# Ruiu et al. (2013) - Emerging entomopathogenic bacteria for insect pest management
*Yersinia*entomophaga*								# Ruiu et al. (2013) - Emerging entomopathogenic bacteria for insect pest management
*Bacillus*sphaericus*								# Ruiu et al. (2013) - Emerging entomopathogenic bacteria for insect pest management
*Photorhabdus*luminescens*							# DOI:10.3390/insects5010139
*Xenorhabdus*										# DOI:10.1371/journal.pone.0027909
*Photorhabdus*temperata*							# DOI:10.3390/insects5010139
*Photorhabdus*asymbiotica*							# DOI:10.3390/insects5010139
*Bacillus*anthracis*								# DOI:10.3390/insects5010139
*Bacillus*cereus*									# DOI:10.3390/insects5010139
*Bacillus*circulans*								# DOI:10.3390/insects5010139
*Lysinibacillus*sphaeriscus*						# DOI:10.3390/insects5010139
*Clostridium*bifermentans*							# DOI:10.3390/insects5010139
*Clostridium*difficile*								# DOI:10.3390/insects5010139
*Clostridium*botulinum*								# DOI:10.3390/insects5010139
*Xenorhabdus*nematophila*							# DOI:10.3390/insects5010139
*Serratia*entomophila*								# DOI:10.3390/insects5010139
*Yersinia*frederiksenii*							# DOI:10.3390/insects5010139
*Yersinia*enterocolitica*							# DOI:10.3390/insects5010139
*Yersinia*pseudotuberculosis*						# DOI:10.3390/insects5010139
*Yersinia*mollaretii*								# DOI:10.3390/insects5010139
*Yersinia*pestis*									# DOI:10.3390/insects5010139
*Pseudomonas*entomophila*							# DOI:10.3390/insects5010139
*Pseudomonas*syringae*								# DOI:10.3390/insects5010139
*Pseudomonas*fluorescens*							# DOI:10.3390/insects5010139
*Pseudomonas*chlororaphis*							# DOI:10.3390/insects5010139
*Paenibacillus*lentimorbus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Paenibacillus*popilliae*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Coxiellaceae*Rickettsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Arsenophonus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Arsenophonus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Pasteuriaceae*Pasteuria*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Rickettsiella*tipulae*								# DOI:10.1016/j.jip.2008.02.005
*Rhabdochlamydia*crassificans*						# DOI:10.1016/j.syapm.2006.06.001







human_pathogens_septicemia			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# List partly obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_septicemia.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*Septicemia.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Acinetobacter*baumannii* 							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1279013.3, NCBI Taxon ID: 1279013, Disease: Septicemia
*Actinomyces*odontolyticus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 411466.7, NCBI Taxon ID: 411466, Disease: Oral abscesses, Septicemia, Conjunctivitis, Respiratory tract infections
*Campylobacter*fetus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 360106.6, NCBI Taxon ID: 360106, Disease: Infertility, Spontaneous abortions, Septicemia, Meningitis
*Corynebacterium*ureicelerivorans*					# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 401472.3, NCBI Taxon ID: 401472, Disease: Septicemia
*Edwardsiella*tarda*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 667121.5, NCBI Taxon ID: 667121, Disease: Gastroenteritis, Septicemia
*Haemophilus*influenzae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 374927.4, NCBI Taxon ID: 374927, Disease: Meningitis, Septicemia, Otitis media, Sinusitis, Bronchitis
*Klebsiella*pneumoniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1310158.5, NCBI Taxon ID: 1310158, Disease: Septicemia
*Neisseria*meningitidis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 272831.7, NCBI Taxon ID: 272831, Disease: Meningitis, Septicemia
*Neisseria*subflava*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 546268.4, NCBI Taxon ID: 546268, Disease: Endocarditis, Septicemia, Meningitis
*Proteus*mirabilis*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 529507.6, NCBI Taxon ID: 529507, Disease: Encephalitis, Urinary tract infection, Pyelonephritis, Pneumonia, Septicemia
*Proteus*penneri*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 471881.3, NCBI Taxon ID: 471881, Disease: Urinary tract infection, Septicemia
*Providencia*stuartii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 471874.6, NCBI Taxon ID: 471874, Disease: Urinary tract infection, Septicemia
*Pseudomonas*aeruginosa*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1423141.3, NCBI Taxon ID: 1423141, Disease: Septicemia
*Staphylococcus*aureus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 908247.3, NCBI Taxon ID: 908247, Disease: Pneumonia, Septicemia
*Staphylococcus*capitis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 904334.4, NCBI Taxon ID: 904334, Disease: Pneumonia, Septicemia
*Staphylococcus*epidermidis*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 764544.3, NCBI Taxon ID: 764544, Disease: Pneumonia, Septicemia
*Staphylococcus*warneri*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 904338.3, NCBI Taxon ID: 904338, Disease: Pneumonia, Septicemia
*Streptococcus*agalactiae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1279012.3, NCBI Taxon ID: 1279012, Disease: Septicemia
*Streptococcus*dysgalactiae*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 486410.3, NCBI Taxon ID: 486410, Disease: Endocarditis, Septicemia, Meningitis
*Streptococcus*gallolyticus*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 545774.3, NCBI Taxon ID: 545774, Disease: Endocarditis, Septicemia, Meningitis



human_pathogens_pneumonia			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# List partly obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_pneumonia.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*Pneumonia.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Acinetobacter*baumannii*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 886889.3, NCBI Taxon ID: 886889, Disease: Nosocomial infections, Pneumonia
*Acinetobacter*lwoffii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1046625.3, NCBI Taxon ID: 1046625, Disease: Nosocomial infections, Pneumonia
*Bacillus*cereus*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 405532.5, NCBI Taxon ID: 405532, Disease: Pneumonia
*Burkholderia*cenocepacia*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 331271.8, NCBI Taxon ID: 331271, Disease: Necrotizing pneumonia
*Burkholderia*mallei*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 243160.12, NCBI Taxon ID: 243160, Disease: Glanders, Pneumonia
*Burkholderiales*bacterium*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 469610.4, NCBI Taxon ID: 469610, Disease: Pneumonia
*Klebsiella*pneumoniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1352932.3, NCBI Taxon ID: 1352932, Disease: Septicemia, pneumonia, Urinary tract infections, and soft tissue infections.
*Legionella*anisa*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1230343.3, NCBI Taxon ID: 1230343, Disease: Pneumonia
*Mycobacterium*massiliense*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1001710.3, NCBI Taxon ID: 1001710, Disease: Hemoptoic pneumonia
*Mycoplasma*pneumoniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1112856.4, NCBI Taxon ID: 1112856, Disease: Pneumonia
*Proteus*mirabilis*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 529507.6, NCBI Taxon ID: 529507, Disease: Encephalitis, Urinary tract infection, Pyelonephritis, Pneumonia, Septicemia
*Pseudomonas*aeruginosa*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208103.3, NCBI Taxon ID: 1208103, Disease: Pneumonia
*Staphylococcus*aureus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 908247.3, NCBI Taxon ID: 908247, Disease: Pneumonia, Septicemia
*Staphylococcus*capitis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 904334.4, NCBI Taxon ID: 904334, Disease: Pneumonia, Septicemia
*Staphylococcus*epidermidis*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 764544.3, NCBI Taxon ID: 764544, Disease: Pneumonia, Septicemia
*Staphylococcus*warneri*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 904338.3, NCBI Taxon ID: 904338, Disease: Pneumonia, Septicemia
*Streptococcus*pneumoniae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 882855.4, NCBI Taxon ID: 882855, Disease: Pneumonia
*Streptococcus*pseudopneumoniae*					# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1054460.4, NCBI Taxon ID: 1054460, Disease: Pneumonia
*Streptococcus*suis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 568814.3, NCBI Taxon ID: 568814, Disease: Meningitis, Arthritis, Pneumonia



human_pathogens_nosocomia			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# List partly obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_nosocomial.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*Nosocomial.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Acinetobacter*baumannii*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 886889.3, NCBI Taxon ID: 886889, Disease: Nosocomial infections, Pneumonia
*Acinetobacter*calcoaceticus*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575585.3, NCBI Taxon ID: 575585, Disease: Nosocomial infections
*Acinetobacter*junii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575587.3, NCBI Taxon ID: 575587, Disease: Nosocomial infections
*Acinetobacter*lwoffii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575588.3, NCBI Taxon ID: 575588, Disease: Nosocomial infections
*Acinetobacter*radioresistens*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575589.3, NCBI Taxon ID: 575589, Disease: Nosocomial infections
*Corynebacterium*jeikeium*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 306537.1, NCBI Taxon ID: 306537, Disease: Nosocomial infections
*Klebsiella*pneumoniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1162296.3, NCBI Taxon ID: 1162296, Disease: Nosocomial infections
*Empedobacter*brevis*								# DOI:10.1128/AAC.46.10.3223-3227.2002


human_pathogens_meningitis			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# List partly obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_meningitis.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*Meningitis.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Aeromonas*enteropelogenes*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 29489.3, NCBI Taxon ID: 29489, Disease: meningitis
*Campylobacter*fetus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 360106.6, NCBI Taxon ID: 360106, Disease: Infertility, Spontaneous abortions, Septicemia, Meningitis
*Campylobacter*jejuni*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 360110.4, NCBI Taxon ID: 360110, Disease: Meningitis
*Cronobacter*condimenti*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1073999.4, NCBI Taxon ID: 1073999, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*dublinensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208656.3, NCBI Taxon ID: 1208656, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*malonaticus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208662.3, NCBI Taxon ID: 1208662, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*sakazakii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208592.3, NCBI Taxon ID: 1208592, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*turicensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208590.3, NCBI Taxon ID: 1208590, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*universalis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1074000.3, NCBI Taxon ID: 1074000, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Enterococcus*faecium*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1178528.3, NCBI Taxon ID: 1178528, Disease: Meningitis
*Haemophilus*influenzae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 374927.4, NCBI Taxon ID: 374927, Disease: Meningitis, Septicemia, Otitis media, Sinusitis, Bronchitis
*Neisseria*meningitidis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1145128.3, NCBI Taxon ID: 1145128, Disease: Meningitis
*Neisseria*subflava*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 546268.4, NCBI Taxon ID: 546268, Disease: Endocarditis, Septicemia, Meningitis
*Streptococcus*agalactiae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 211110.3, NCBI Taxon ID: 211110, Disease: Meningitis
*Streptococcus*dysgalactiae*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 486410.3, NCBI Taxon ID: 486410, Disease: Endocarditis, Septicemia, Meningitis
*Streptococcus*gallolyticus*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 545774.3, NCBI Taxon ID: 545774, Disease: Endocarditis, Septicemia, Meningitis
*Streptococcus*iniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 386894.6, NCBI Taxon ID: 386894, Disease: Meningitis, Cellulitis
*Streptococcus*pneumoniae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1001745.3, NCBI Taxon ID: 1001745, Disease: Meningitis
*Streptococcus*suis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 568814.3, NCBI Taxon ID: 568814, Disease: Meningitis, Arthritis, Pneumonia



human_pathogens_gastroenteritis			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# List partly obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_gastroenteritis.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*Gastroenteritis.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Arcobacter*butzleri* 								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 367737.6, NCBI Taxon ID: 367737, Disease: Gastroenteritis, Bacteremia
*Campylobacter*concisus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1242968.3, NCBI Taxon ID: 1242968, Disease: Acute gastroenteritis
*Campylobacter*jejuni*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1381117.3, NCBI Taxon ID: 1381117, Disease: Gastroenteritis
*Campylobacter*upsaliensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 306264.5, NCBI Taxon ID: 306264, Disease: Gastroenteritis, Diarrhea
*Edwardsiella*tarda*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 667121.5, NCBI Taxon ID: 667121, Disease: Gastroenteritis, Septicemia
*Escherichia*coli*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 701177.3, NCBI Taxon ID: 701177, Disease: Gastroenteritis
*Helicobacter*canadensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 537970.13, NCBI Taxon ID: 537970, Disease: Gastroenteritis
*Helicobacter*pullorum*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 537972.5, NCBI Taxon ID: 537972, Disease: Gastroenteritis
*Leminorella*grimontii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1005999.3, NCBI Taxon ID: 1005999, Disease: Gastroenteritis
*Plesiomonas*shigelloides*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1315976.3, NCBI Taxon ID: 1315976, Disease: Gastroenteritis
*Providencia*alcalifaciens*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 520999.6, NCBI Taxon ID: 520999, Disease: Gastroenteritis
*Providencia*rettgeri*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 521000.6, NCBI Taxon ID: 521000, Disease: Gastroenteritis
*Salmonella*enterica*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1179780.3, NCBI Taxon ID: 1179780, Disease: Gastroenteritis
*Shigella*flexneri*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 766154.3, NCBI Taxon ID: 766154, Disease: Gastroenteritis
*Staphylococcus*aureus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1144271.3, NCBI Taxon ID: 1144271, Disease: Cellulitis, Gastroenteritis, Ineffective endocarditis, Osteomyelitis, Pneumonia, Toxic shock syndrome
*Yersinia*kristensenii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 527012.3, NCBI Taxon ID: 527012, Disease: Gastroenteritis
*Yersinia*pseudotuberculosis*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 349747.9, NCBI Taxon ID: 349747, Disease: Gastroenteritis




human_pathogens_diarrhea			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# List partly obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_diarrhea.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*Diarrhea.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Bacteroides*fragilis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 295405.11, NCBI Taxon ID: 295405, Disease: Diarrhea, Abscesses
*Brachyspira*pilosicoli*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1161918.5, NCBI Taxon ID: 1161918, Disease: Diarrhea
*Campylobacter*jejuni*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1310162.3, NCBI Taxon ID: 1310162, Disease: Diarrhea
*Campylobacter*upsaliensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 306264.5, NCBI Taxon ID: 306264, Disease: Gastroenteritis, Diarrhea
*Clostridium*difficile*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1440056.3, NCBI Taxon ID: 1440056, Disease: Diarrhea
*Clostridium*spiroforme*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 428126.7, NCBI Taxon ID: 428126, Disease: Antibiotic-associated Diarrhea
*Escherichia*coli*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1116119.3, NCBI Taxon ID: 1116119, Disease: Diarrhea
*Morganella*morganii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1239989.3, NCBI Taxon ID: 1239989, Disease: Diarrhea
*Proteus*mirabilis*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1245027.3, NCBI Taxon ID: 1245027, Disease: Diarrhea
*Vibrio*cholerae*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1055325.3, NCBI Taxon ID: 1055325, Disease: Cholera-like Diarrhea
*Vibrio*mimicus*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 756012.3, NCBI Taxon ID: 756012, Disease: Diarrhea, internal infections






human_pathogens_all			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:human_pathogens_septicemia
add_group:human_pathogens_pneumonia
add_group:human_pathogens_nosocomia
add_group:human_pathogens_meningitis
add_group:human_pathogens_gastroenteritis
add_group:human_pathogens_diarrhea
*Arcobacter*cryaerophilus*							# DOI:10.1128/JCM.42.4.1851–1852.2004
*Arcobacter*butzleri*								# DOI:10.1128/JCM.42.4.1851–1852.2004
*Pantoea*agglomerans*								# DOI:10.1128/JCM.00632-07
*Serratia*marcescens*								# DOI:10.1001/jama.1970.03180120062015
*Chlamydia*trachomatis*								# DOI:10.1016/S0140-6736(95)90221-X
*Vibrio*parahaemolyticus*							# DOI:10.1016/S0140-6736(03)12659-1
*Vibrio*vulnificus*									# DOI:10.7326/0003-4819-109-4-318
*Ureaplasma*urealyticum*							# DOI:10.1016/S0140-6736(88)92536-6
*Ureaplasma*parvum*									# DOI:10.1186/1471-2334-7-129
*Mycoplasma*hominis*								# DOI:10.1186/1471-2334-7-129
*Haemophilus*ducreyi*								# DOI:10.1016/S0140-6736(83)91161-3
*Mycoplasma*genitalium*								# DOI:10.1016/0140-6736(93)91411-E
*Neisseria*gonorrhea*								# DOI:10.1542/peds.104.6.e72
*Treponema*pallidum*								# DOI:10.7326/0003-4819-109-11-855
*Listeria*monocytogenes*							# DOI:10.1083/jcb.109.4.1597
*Campylobacter*jejuni*								# DOI:10.1128/JB.184.15.4187-4196.2002
*Campylobacter*concisus*							# DOI:10.1371/journal.pone.0029045
*Yersinia*pseudotuberculosis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Yersinia*pestis*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Salmonella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Salmonella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Edwardsiella*tarda*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Calymmatobacterium*granulomatis*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*damsela*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*vulnificus*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Achromobacter*xylosoxidans*						# DOI:10.1002/cncr.20604
*Achromobacter*denitrificans*						# DOI:10.1002/cncr.20604
*Alcaligenes*faecalis*								# DOI:10.1002/cncr.20604
*Kerstersia*gyiorum*								# DOI:10.1128/JCM.03625-14
*Staphylococcus*aureus*								# DOI:10.1001/jama.2014.9743
*Shigella*											# Hale and Keusch (1996) - Medical Microbiology, Chapter 22
*Providencia*stuartii*								# Lin et al. (2008) - Purple urine bag syndrome in nursing homes: Ten elderly case reports and a literature review
*Morganella*morganii*								# Lin et al. (2008) - Purple urine bag syndrome in nursing homes: Ten elderly case reports and a literature review
*Pseudomonas*aeruginosa*							# Lin et al. (2008) - Purple urine bag syndrome in nursing homes: Ten elderly case reports and a literature review
*Providencia*mirabilis*								# Lin et al. (2008) - Purple urine bag syndrome in nursing homes: Ten elderly case reports and a literature review
*Cronobacter*sakazakii*								# DOI:10.1111/j.1574-6941.2011.01248.x
*Enterobacter*aerogenes*							# DOI:10.1111/j.1574-6941.2011.01248.x
*Enterobacter*cancerogenus*							# DOI:10.1111/j.1574-6941.2011.01248.x
*Enterococcus*faecalis*								# DOI:10.1111/j.1574-6941.2011.01248.x
*Klebsiella*pneumoniae*								# DOI:10.1111/j.1574-6941.2011.01248.x
*Myroides*odoratimimus*								# DOI:10.1111/j.1574-6941.2011.01248.x
*Plesiomonas*shigelloides*							# DOI:10.1111/j.1574-6941.2011.01248.x
*Proteus*mirabilis*									# DOI:10.1111/j.1574-6941.2011.01248.x
*Providencia*alcalifaciens*							# DOI:10.1111/j.1574-6941.2011.01248.x
*Pseudomonas*mendocina*								# DOI:10.1111/j.1574-6941.2011.01248.x
*Serratia*rubidaea*									# DOI:10.1111/j.1574-6941.2011.01248.x
*Shigella*flexneri*									# DOI:10.1111/j.1574-6941.2011.01248.x
*Staphylococcus*warneri*							# DOI:10.1111/j.1574-6941.2011.01248.x
*Stenotrophomonas*maltophilia*						# DOI:10.1111/j.1574-6941.2011.01248.x
*Wohlfahrtiimonas*chitiniclastica*					# DOI:10.1111/j.1574-6941.2011.01248.x
*Aeromonas*hydrophila*								# DOI:10.1111/j.1574-6941.2011.01248.x
*Streptococcus*pneumoniae*							# Sutcliffe et al. (1996) - Streptococcus pneumoniae and Streptococcus pyogenes resistant to macrolides but sensitive to clindamycin: a common resistance pattern mediated by an efflux system
*Streptococcus*pyogenes*							# Sutcliffe et al. (1996) - Streptococcus pneumoniae and Streptococcus pyogenes resistant to macrolides but sensitive to clindamycin: a common resistance pattern mediated by an efflux system
*Streptococcus*mutans*								# DOI:10.1073/pnas.172501299
*Streptococcus*suis*								# DOI:10.1093/clinids/10.1.131
*Streptococcus*zooepidemicus*						# DOI:10.1371/journal.pone.0003026
*Streptococcus*intermedius*							# Claridge et al. (2001) - Streptococcus intermedius, Streptococcus constellatus, and Streptococcus anginosus (Streptococcus milleri group) are of different clinical importance and are not equally associated with abscess
*Streptococcus*constellatus*						# Claridge et al. (2001) - Streptococcus intermedius, Streptococcus constellatus, and Streptococcus anginosus (Streptococcus milleri group) are of different clinical importance and are not equally associated with abscess
*Streptococcus*anginosus*							# Claridge et al. (2001) - Streptococcus intermedius, Streptococcus constellatus, and Streptococcus anginosus (Streptococcus milleri group) are of different clinical importance and are not equally associated with abscess
*Streptococcus*oralis*								# Marsh and Martin (1999) - Oral microbiology, ISBN: 0-7236-1051-7
*Pneumococcus*										# Sutcliffe et al. (1996) - Streptococcus pneumoniae and Streptococcus pyogenes resistant to macrolides but sensitive to clindamycin: a common resistance pattern mediated by an efflux system
*Streptococcus*pseudopneumoniae*					# DOI:10.1128/JCM.42.10.4686-4696.2004
*Streptococcus*tigurinus*							# DOI:10.1007/s10096-013-1914-9
*Streptococcus*uberis*								# DOI:10.1128/AEM.72.2.1420-1428.2006
*Streptococcus*canis*								# DOI:10.3168/jds.S0022-0302(05)72949-0
*Streptococcus*bovis*								# DOI:10.1590/S1413-86702010000300017 
*Vibrio*cholerae*									# DOI:10.1136/bmj.288.6414.379
*Acinetobacter*baumannii*							# Lemuel et al. (2010) - Multidrug resistant Acinetobacter baumannii: a descriptive study in a city hospital
*Acinetobacter*pittii*								# DOI:10.1002/iub.534
*Acinetobacter*nosocomialis*						# DOI:10.1002/iub.534
*Burkholderia*pseudomallei*							# DOI:10.1007/s00284-013-0330-9
*Burkholderia*cepacia*								# DOI:10.1007/s00284-013-0330-9
*Burkholderia*mallei*								# DOI:10.1128/JCM.41.5.2068-2079.2003
*Clostridium*perfringens*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterococcus*faecium*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Mycobacterium*fortuitum*							# DOI:10.1099/00207713-50-2-575
*Mycobacterium*peregrinum*							# DOI:10.1128/JCM.43.12.5925-5935.2005
*Stenotrophomonas*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Moraxellaceae*Acinetobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Mycobacterium*leprae*								# DOI:10.1038/ng.477
*Mycobacterium*tuberculosis*						# DOI:10.1038/31159
*Coxiellaceae*Coxiella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B, Gammaproteobacteria
*Haemophilus*influenzae*							# DOI:10.1126/science.7542800
*Rhizobiales*Afipia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Afipia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Francisella*tularensis*							# DOI:10.1099/jmm.0.2008/000653-0
*Acetobacteraceae*Roseomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Spirochaetaceae*Borrelia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Moraxellaceae*Moraxella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bordetella*parapertussis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*stutzeri*								# DOI:10.1128/MMBR.00047-05
*Corynebacterium*diphtheriae*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ulcerans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pseudotuberculosis*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*auriscanis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*bovis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*canis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*freiburgense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*kutscheri*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*mastitidis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*glucuronolyticum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*minutissimum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*urealyticum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*striatum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*abscessus*							# DOI:10.1111/j.1600-0463.2006.apm_390.x
*Mycobacterium*asiaticum*							# Dawson et al (1995). Mycobacterium asiaticum as the probable causative agent in a case of olecranon bursitis
*Mycobacterium*avium*								# Field et al (2004). Mycobacterium avium complex pulmonary disease in patients without HIV infection
*Mycobacterium*intracellulare*						# Field et al (2004). Mycobacterium avium complex pulmonary disease in patients without HIV infection
*Mycobacterium*bacteremicum*						# DOI:10.1128/JCM.00853-10
*Mycobacterium*neoaurum*							# DOI:10.1128/JCM.00853-10
*Mycobacterium*barrassiae*							# DOI:10.1128/JCM.00724-06
*Mycobacterium*branderi*							# DOI:10.4103/2231-0770.127417
*Mycobacterium*celatum*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*asteroides*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*brasiliensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*otitidiscaviarum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*transvalensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*abscessus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*africana*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*mexicana*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*veterana*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*asteroides*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*brasiliensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*otitidiscaviarum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*farcinica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*transvalensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*asteroides*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*farcinica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*nova*										# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Nocardia*brasiliensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*otitidiscaviarum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*pseudobrasiliensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*transvalensis* 							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*beijingensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*cyriacigeorgica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardia*veterana*									# DOI:10.1016/j.ijid.2011.03.001
*Dermabacter*hominis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Helicobacter*pylori*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*putrefaciens*							# Vandepitte and Debois (1978). Pseudomonas putrefaciens as a cause of bacteremia in humans
# The following list was obtained from Pathosystems Resource Integration Centre (PATRIC): https://www.patricbrc.org/portal/portal/patric/GenomeList?cType=taxon&cId=2&dataSource=&displayMode=&pk=&kw=
# using the command:
#	./extract_regex_list_from_file.py -i 'List of human pathogens PATRIC.txt' -o human_pathogens_all.txt -n '^([^\s]+)\s+(\w+)\s+(\w+)[^\t]*\t(\d+)\t\[(.*)\]' --format '*$2$*$3$* # Pathosystems Resource Integration Centre (PATRIC). Genome ID: $1$, NCBI Taxon ID: $4$, Disease: $5$' --linewise -v -f --unique --uniqueness_format '$2$ $3$' --add_header_to_output --case_insensitive
# after removing all columns except the following: 'Genome ID', 'Genome Name', 'NCBI Taxon ID', 'Disease'.
# Note: Any existing strain-level resolution was omitted.
*Acinetobacter*baumannii*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 886889.3, NCBI Taxon ID: 886889, Disease: Nosocomial infections, Pneumonia
*Acinetobacter*calcoaceticus*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575585.3, NCBI Taxon ID: 575585, Disease: Nosocomial infections
*Acinetobacter*junii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575587.3, NCBI Taxon ID: 575587, Disease: Nosocomial infections
*Acinetobacter*lwoffii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575588.3, NCBI Taxon ID: 575588, Disease: Nosocomial infections
*Acinetobacter*radioresistens*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 575589.3, NCBI Taxon ID: 575589, Disease: Nosocomial infections
*Actinomyces*odontolyticus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 411466.7, NCBI Taxon ID: 411466, Disease: Oral abscesses, Septicemia, Conjunctivitis, Respiratory tract infections
*Aeromonas*enteropelogenes*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 29489.3, NCBI Taxon ID: 29489, Disease: meningitis
*Arcobacter*butzleri*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 367737.6, NCBI Taxon ID: 367737, Disease: Gastroenteritis, Bacteremia
*Bacillus*anthracis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 592021.13, NCBI Taxon ID: 592021, Disease: Anthrax
*Bacillus*cereus*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 526994.3, NCBI Taxon ID: 526994, Disease: Food poisoning
*Bacteroides*fragilis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 295405.11, NCBI Taxon ID: 295405, Disease: Diarrhea, Abscesses
*Bifidobacterium*animalis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1168290.3, NCBI Taxon ID: 1168290, Disease: Commensal
*Bordetella*bronchiseptica*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1331247.3, NCBI Taxon ID: 1331247, Disease: Whooping cough
*Bordetella*pertussis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1331263.3, NCBI Taxon ID: 1331263, Disease: Whooping cough
*Brachyspira*pilosicoli*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1161918.5, NCBI Taxon ID: 1161918, Disease: Diarrhea
*Brucella*inopinata*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 470735.4, NCBI Taxon ID: 470735, Disease: Brucellosis
*Brucella*melitensis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 546272.3, NCBI Taxon ID: 546272, Disease: Brucellosis
*Burkholderia*cenocepacia*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 331271.8, NCBI Taxon ID: 331271, Disease: Necrotizing pneumonia
*Burkholderia*mallei*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 243160.12, NCBI Taxon ID: 243160, Disease: Glanders, Pneumonia
*Burkholderia*pseudomallei*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1085027.3, NCBI Taxon ID: 1085027, Disease: Melioidosis
*Burkholderiales*bacterium*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 469610.4, NCBI Taxon ID: 469610, Disease: Pneumonia
*Campylobacter*concisus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1242968.3, NCBI Taxon ID: 1242968, Disease: Acute gastroenteritis
*Campylobacter*fetus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 360106.6, NCBI Taxon ID: 360106, Disease: Infertility, Spontaneous abortions, Septicemia, Meningitis
*Campylobacter*jejuni*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1310162.3, NCBI Taxon ID: 1310162, Disease: Diarrhea
*Campylobacter*upsaliensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 306264.5, NCBI Taxon ID: 306264, Disease: Gastroenteritis, Diarrhea
*Citrobacter*koseri*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 290338.8, NCBI Taxon ID: 290338, Disease: Bacteremia, Meningoencephalitis, Cerebral abscesses
*Clostridium*difficile*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1440056.3, NCBI Taxon ID: 1440056, Disease: Diarrhea
*Clostridium*sordellii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1172204.3, NCBI Taxon ID: 1172204, Disease: Toxic shock syndrome
*Clostridium*spiroforme*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 428126.7, NCBI Taxon ID: 428126, Disease: Antibiotic-associated Diarrhea
*Corynebacterium*amycolatum*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 553204.6, NCBI Taxon ID: 553204, Disease: Endocarditis, Sepsis
*Corynebacterium*jeikeium*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 306537.1, NCBI Taxon ID: 306537, Disease: Nosocomial infections
*Corynebacterium*urealyticum*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1267754.3, NCBI Taxon ID: 1267754, Disease: Urinary tract infection
*Corynebacterium*ureicelerivorans*					# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 401472.3, NCBI Taxon ID: 401472, Disease: Septicemia
*Cronobacter*condimenti*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1073999.4, NCBI Taxon ID: 1073999, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*dublinensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208656.3, NCBI Taxon ID: 1208656, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*malonaticus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208662.3, NCBI Taxon ID: 1208662, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*sakazakii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208592.3, NCBI Taxon ID: 1208592, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*turicensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208590.3, NCBI Taxon ID: 1208590, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Cronobacter*universalis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1074000.3, NCBI Taxon ID: 1074000, Disease: Necrotizing enterocolitis, Meningitis, Septicaemia
*Edwardsiella*tarda*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 667121.5, NCBI Taxon ID: 667121, Disease: Gastroenteritis, Septicemia
*Eggerthella*lenta*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 479437.5, NCBI Taxon ID: 479437, Disease: Bacteremia
*Enterobacter*cancerogenus*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 500639.8, NCBI Taxon ID: 500639, Disease: Cellulitis
*Enterococcus*faecalis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 565642.4, NCBI Taxon ID: 565642, Disease: Urinary tract infection, Bacteremia, Endocarditis
*Enterococcus*faecium*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 333849.13, NCBI Taxon ID: 333849, Disease: Urinary tract infection, Bacteremia, Endocarditis
*Escherichia*coli*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1333587.3, NCBI Taxon ID: 1333587, Disease: Bacteremia
*Escherichia*fergusonii*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 585054.5, NCBI Taxon ID: 585054, Disease: Urinary tract infection (UTI), Bacteremia
*Haemophilus*influenzae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 374927.4, NCBI Taxon ID: 374927, Disease: Meningitis, Septicemia, Otitis media, Sinusitis, Bronchitis
*Helicobacter*canadensis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 537970.13, NCBI Taxon ID: 537970, Disease: Gastroenteritis
*Helicobacter*cinaedi*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 537971.5, NCBI Taxon ID: 537971, Disease: Bacteremia, Cellulitis, Arthritis
*Helicobacter*fennelliae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1325130.3, NCBI Taxon ID: 1325130, Disease: Bacteremia, Colitis
*Helicobacter*pullorum*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 537972.5, NCBI Taxon ID: 537972, Disease: Gastroenteritis
*Helicobacter*pylori*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 85962.8, NCBI Taxon ID: 85962, Disease: Gastritis, Peptic ulcer disease
*Kingella*kingae*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1348241.3, NCBI Taxon ID: 1348241, Disease: Bacteremia
*Klebsiella*pneumoniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1310158.5, NCBI Taxon ID: 1310158, Disease: Septicemia
*Legionella*anisa*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1230343.3, NCBI Taxon ID: 1230343, Disease: Pneumonia
*Leminorella*grimontii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1005999.3, NCBI Taxon ID: 1005999, Disease: Gastroenteritis
*Listeria*monocytogenes*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 393128.7, NCBI Taxon ID: 393128, Disease: Listeriosis
*Morganella*morganii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1239989.3, NCBI Taxon ID: 1239989, Disease: Diarrhea
*Mycobacterium*avium*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 243243.7, NCBI Taxon ID: 243243, Disease: Pulmonary tuberculosis
*Mycobacterium*colombiense*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1041522.3, NCBI Taxon ID: 1041522, Disease: Pulmonary tuberculosis
*Mycobacterium*intracellulare*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 487521.5, NCBI Taxon ID: 487521, Disease: Tuberculosis
*Mycobacterium*marinum*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 216594.6, NCBI Taxon ID: 216594, Disease: Tuberculosis, Dermatitis, Arthritis
*Mycobacterium*massiliense*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1001710.3, NCBI Taxon ID: 1001710, Disease: Hemoptoic pneumonia
*Mycobacterium*septicum*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1341646.3, NCBI Taxon ID: 1341646, Disease: Bacteremia
*Mycobacterium*smegmatis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 710686.3, NCBI Taxon ID: 710686, Disease: Cellulitis
*Mycobacterium*tuberculosis*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 164513.4, NCBI Taxon ID: 164513, Disease: Tuberculosis
*Mycoplasma*genitalium*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 243273.25, NCBI Taxon ID: 243273, Disease: Urinary tract infection, respritory tract infection
*Mycoplasma*penetrans*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 272633.4, NCBI Taxon ID: 272633, Disease: Urinary tract infection, respritory tract infection
*Mycoplasma*pneumoniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1112856.4, NCBI Taxon ID: 1112856, Disease: Pneumonia
*Neisseria*meningitidis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1145128.3, NCBI Taxon ID: 1145128, Disease: Meningitis
*Neisseria*subflava*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 546268.4, NCBI Taxon ID: 546268, Disease: Endocarditis, Septicemia, Meningitis
*Parascardovia*denticolens*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1193128.3, NCBI Taxon ID: 1193128, Disease: Commensal
*Photorhabdus*asymbiotica*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 291112.3, NCBI Taxon ID: 291112, Disease: Cellulitis, Bacteremia
*Plesiomonas*shigelloides*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1315976.3, NCBI Taxon ID: 1315976, Disease: Gastroenteritis
*Prevotella*bivia*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 868129.3, NCBI Taxon ID: 868129, Disease: Commensal
*Proteus*mirabilis*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1245027.3, NCBI Taxon ID: 1245027, Disease: Diarrhea
*Proteus*penneri*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 471881.3, NCBI Taxon ID: 471881, Disease: Urinary tract infection, Septicemia
*Providencia*alcalifaciens*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 520999.6, NCBI Taxon ID: 520999, Disease: Gastroenteritis
*Providencia*rettgeri*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 521000.6, NCBI Taxon ID: 521000, Disease: Gastroenteritis
*Providencia*stuartii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 471874.6, NCBI Taxon ID: 471874, Disease: Urinary tract infection, Septicemia
*Pseudomonas*aeruginosa*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1208103.3, NCBI Taxon ID: 1208103, Disease: Pneumonia
*Salmonella*enterica*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 321314.9, NCBI Taxon ID: 321314, Disease: Salmonellosis, Swine paratyphoid
*Shigella*boydii*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 932676.3, NCBI Taxon ID: 932676, Disease: Dysenteria, Food poisoning
*Shigella*dysenteriae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 941429.3, NCBI Taxon ID: 941429, Disease: Dysenteria, Food poisoning
*Shigella*flexneri*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 766154.3, NCBI Taxon ID: 766154, Disease: Gastroenteritis
*Shigella*sonnei*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 216599.7, NCBI Taxon ID: 216599, Disease: Dysenteria, Food poisoning
*Staphylococcus*aureus*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 908247.3, NCBI Taxon ID: 908247, Disease: Pneumonia, Septicemia
*Staphylococcus*capitis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1189311.3, NCBI Taxon ID: 1189311, Disease: Commensal
*Staphylococcus*epidermidis*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 764544.3, NCBI Taxon ID: 764544, Disease: Pneumonia, Septicemia
*Staphylococcus*saprophyticus*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 342451.11, NCBI Taxon ID: 342451, Disease: Urinary tract infection
*Staphylococcus*warneri*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 904338.3, NCBI Taxon ID: 904338, Disease: Pneumonia, Septicemia
*Streptococcus*agalactiae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 211110.3, NCBI Taxon ID: 211110, Disease: Meningitis
*Streptococcus*dysgalactiae*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 486410.3, NCBI Taxon ID: 486410, Disease: Endocarditis, Septicemia, Meningitis
*Streptococcus*gallolyticus*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 545774.3, NCBI Taxon ID: 545774, Disease: Endocarditis, Septicemia, Meningitis
*Streptococcus*iniae*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 386894.6, NCBI Taxon ID: 386894, Disease: Meningitis, Cellulitis
*Streptococcus*mitis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1159208.3, NCBI Taxon ID: 1159208, Disease: Bacteremia
*Streptococcus*pneumoniae*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 882855.4, NCBI Taxon ID: 882855, Disease: Pneumonia
*Streptococcus*pseudopneumoniae*					# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1054460.4, NCBI Taxon ID: 1054460, Disease: Pneumonia
*Streptococcus*pyogenes*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1207470.4, NCBI Taxon ID: 1207470, Disease: Toxic shock syndrome
*Streptococcus*sanguinis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 888814.4, NCBI Taxon ID: 888814, Disease: Endocarditis
*Streptococcus*suis*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 568814.3, NCBI Taxon ID: 568814, Disease: Meningitis, Arthritis, Pneumonia
*Streptococcus*urinalis*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 764291.3, NCBI Taxon ID: 764291, Disease: Urinary tract infection
*Ureaplasma*urealyticum*							# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 515611.4, NCBI Taxon ID: 515611, Disease: Urinary tract infection, respritory tract infection
*Vibrio*cholerae*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 1236549.3, NCBI Taxon ID: 1236549, Disease: Cholera
*Vibrio*mimicus*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 756012.3, NCBI Taxon ID: 756012, Disease: Diarrhea, internal infections
*Yersinia*kristensenii*								# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 527012.3, NCBI Taxon ID: 527012, Disease: Gastroenteritis
*Yersinia*pestis*									# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 214092.21, NCBI Taxon ID: 214092, Disease: Bubonic plague
*Yersinia*pseudotuberculosis*						# Pathosystems Resource Integration Centre (PATRIC). Genome ID: 349747.9, NCBI Taxon ID: 349747, Disease: Gastroenteritis







fish_parasites			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# (incomplete list)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Streptococcus*iniae*								# DOI:10.1128/AEM.67.8.3756-3758.2001
*Streptococcus*shiloi*								# Eldar (1994) - Streptococcus shiloi andStreptococcus difficile : Two new streptococcal species causing a meningoencephalitis in fish
*treptococcus*difficile*							# Eldar (1994) - Streptococcus shiloi andStreptococcus difficile : Two new streptococcal species causing a meningoencephalitis in fish
*Piscirickettsia*salmonis*							# DOI:10.1046/j.1365-2761.2003.00460.x
*Piscirickettsiaceae*Piscirickettsia*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Erysipelothrix*rhusiopathiae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Vibrio*anguillarum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*ichthyoenteri*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2



human_gut			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Campylobacter*concisus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Klebsiella*pneumoniae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Escherichia*coli*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ruminococcus*champanellensis*						# DOI:10.1099/ijs.0.027375-0
*Bacteroides*uniformis*								# DOI:10.1038/nature08821
*Alistipes*putredinis*								# DOI:10.1038/nature08821
*Parabacteroides*merdae*							# DOI:10.1038/nature08821
*Dorea*longicatena*									# DOI:10.1038/nature08821
*Ruminococcus*bromii* 								# DOI:10.1038/nature08821
*Bacteroides*caccae*								# DOI:10.1038/nature08821
*Clostridium*SS2-1*									# DOI:10.1038/nature08821
Bacteroides*thetaiotaomicron* 						# DOI:10.1038/nature08821
*Eubacterium*hallii*								# DOI:10.1038/nature08821
*Ruminococcus*torques* 								# DOI:10.1038/nature08821
*Unknown*SS3-4* 									# DOI:10.1038/nature08821
*Ruminococcus*SR1-5* 								# DOI:10.1038/nature08821
*Faecalibacterium*prausnitzii*						# DOI:10.1038/nature08821
*Ruminococcus*lactaris*								# DOI:10.1038/nature08821
*Collinsella*aerofaciens*							# DOI:10.1038/nature08821
*Dorea*formicigenerans*								# DOI:10.1038/nature08821
*Bacteroides*vulgatus* 								# DOI:10.1038/nature08821
*Roseburia*intestinalis* 							# DOI:10.1038/nature08821
*Bacteroides*2_1_7*									# DOI:10.1038/nature08821
*Eubacterium*siraeum*								# DOI:10.1038/nature08821
*Parabacteroides*distasonis* 						# DOI:10.1038/nature08821
*Bacteroides*9_1_42FAA* 							# DOI:10.1038/nature08821
*Bacteroides*ovatus*								# DOI:10.1038/nature08821
*Bacteroides*4_3_47FAA* 							# DOI:10.1038/nature08821
*Bacteroides*2_2_4*									# DOI:10.1038/nature08821
*Eubacterium*rectale*								# DOI:10.1038/nature08821
*Bacteriodes*xylanisolvens* 						# DOI:10.1038/nature08821
*Coprococcus*comes* 								# DOI:10.1038/nature08821
*Bacteroides*D1*									# DOI:10.1038/nature08821
*Bacteroides*D4*									# DOI:10.1038/nature08821
*Eubacterium*ventriosum*							# DOI:10.1038/nature08821
*Bacteroides*dorei*									# DOI:10.1038/nature08821
*Ruminococcus*obeum* 								# DOI:10.1038/nature08821
*Subdoligranulum*variabile*							# DOI:10.1038/nature08821
*Bacteroides*capillosus*							# DOI:10.1038/nature08821
*Streptococcus*thermophilus*						# DOI:10.1038/nature08821
*Clostridium*leptum*								# DOI:10.1038/nature08821
*Holdemania*filiformis*								# DOI:10.1038/nature08821
*Bacteroides*stercoris*								# DOI:10.1038/nature08821
*Coprococcus*eutactus*								# DOI:10.1038/nature08821
*Clostridium*M62-1*									# DOI:10.1038/nature08821
*Bacteroides*eggerthii*								# DOI:10.1038/nature08821
*Butyrivibrio*crossotus*							# DOI:10.1038/nature08821
*Bacteroides*finegoldii*							# DOI:10.1038/nature08821
*Parabacteroides*johnsonii*							# DOI:10.1038/nature08821
*Clostridium*L2-50*									# DOI:10.1038/nature08821
*Clostridium*nexile*								# DOI:10.1038/nature08821
*Bacteroides*pectinophilus* 						# DOI:10.1038/nature08821
*Anaerotruncus*colihominis* 						# DOI:10.1038/nature08821
*Ruminococcus*gnavus*								# DOI:10.1038/nature08821
*Bacteroides*intestinalis*							# DOI:10.1038/nature08821
*Bacteroides*fragilis*								# DOI:10.1038/nature08821
*Clostridium*asparagiforme* 						# DOI:10.1038/nature08821
*Enterococcus*faecalis* 							# DOI:10.1038/nature08821
*Clostridium*scindens*								# DOI:10.1038/nature08821
*Blautia*hansenii*									# DOI:10.1038/nature08821
*Bacteroides*pectinophilus*							# DOI:10.1126/science.1183605
*Bifidobacterium*angulatum*							# DOI:10.1126/science.1183605
*Bifidobacterium*bifidum*							# DOI:10.1126/science.1183605
*Bifidobacterium*pseudocatenulatum*					# DOI:10.1126/science.1183605
*Chryseobacterium*gleum*							# DOI:10.1126/science.1183605
*Clostridium*hylemonae*								# DOI:10.1126/science.1183605
*Coprococcus*comes*									# DOI:10.1126/science.1183605
*Corynebacterium*amycolatum*						# DOI:10.1126/science.1183605
*Corynebacterium*pseudogenitalum*					# DOI:10.1126/science.1183605
*Corynebacterium*seminale*							# DOI:10.1126/science.1183605
*Enhydrobacter*aerosaccus*							# DOI:10.1126/science.1183605
*Escherichia*coli*									# DOI:10.1126/science.1183605
*Finegoldia*magna*									# DOI:10.1126/science.1183605
*Gardnerella*vaginalis*								# DOI:10.1126/science.1183605
*Helicobacter*pullorum*								# DOI:10.1126/science.1183605
*Lactobacillus*gasseri*								# DOI:10.1126/science.1183605
*Lactobacillus*jensenii*							# DOI:10.1126/science.1183605
*Lactobacillus*reuteri*								# DOI:10.1126/science.1183605
*Listeria*grayi*									# DOI:10.1126/science.1183605
*Mobiluncus*curtisii*								# DOI:10.1126/science.1183605
*Proteus*penneri*									# DOI:10.1126/science.1183605
*Staphylococcus*aureus*								# DOI:10.1126/science.1183605
*Streptococcus*pneumonia*							# DOI:10.1126/science.1183605
*Butyrivibrio*crossotus*							# DOI:10.1007/0-387-30744-3_35
*Bifidobacterium*adolescentis*						# DOI:10.1016/j.mimet.2004.05.006
*Bifidobacterium*angulatum*							# DOI:10.1016/j.mimet.2004.05.006
*Bifidobacterium*bifidum*							# DOI:10.1016/j.mimet.2004.05.006
*Bifidobacterium*breve*								# DOI:10.1016/j.mimet.2004.05.006
*Bifidobacterium*catenulatum*						# DOI:10.1016/j.mimet.2004.05.006
*Bifidobacterium*dentium*							# DOI:10.1016/j.mimet.2004.05.006
*Bifidobacterium*longum*							# DOI:10.1016/j.mimet.2004.05.006
*Clostridium*perfringens*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*ramosum*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*innocuum*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*paraputrificum*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*sporogenes*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*tertium*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*bifermentans*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Clostridium*butyricum*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*pseudocatenulatum*					# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*longum*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*angulatum*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*adolescentis*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*catenulatum*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*bifidum*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*gallicum*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*infantis*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bifidobacterium*breve*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterococcus*faecalis*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterococcus*faecium*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Helicobacter*pylori*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterobacteriales*Escherichia*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterobacteriaceae*Escherichia*					# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383. Legacy taxonomy
*Enterobacteriales*Escherichia-Shigella*			# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterobacteriales*Proteus*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterobacteriaceae*Proteus*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383. Legacy taxonomy
*Enterobacteriales*Citrobacter*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterobacteriaceae*Citrobacter*					# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383. Legacy taxonomy
*Enterobacteriales*Enterobacter*					# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Enterobacteriaceae*Enterobacter*					# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383. Legacy taxonomy
*Desulfovibrio*desulfuricans*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Desulfovibrio*fairfieldensis*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Desulfovibrio*vulgaris*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Acidaminococcus*									# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Faecalibacterium*prausnitzii*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Eubacterium*lentum*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Eubacterium*aerofaciens*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Eggerthella*lenta*									# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Collinsella*aerofaciens*							# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bacteroides*thetaiotaomicron*						# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Bacteroides*vulgatus*								# Wilson (2009) - Bacteriology of Humans: An Ecological Perspective, ISBN: 9781444300383
*Roseburia*hominis*									# DOI:10.1099/ijs.0.64098-0
*Roseburia*inulinivorans*							# DOI:10.1099/ijs.0.64098-0
*Lachnospiraceae*Coprococcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Methanobrevibacter*smithii*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1



mammal_gut			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:human_gut
*Catellicoccus*marimammalium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Oscillospira*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3



animal_parasites_or_symbionts			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# (incomplete list)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:fish_parasites
add_group:human_gut
add_group:human_pathogens_all
add_group:invertebrate_parasites
*Helicobacter*canis*								# DOI:10.1099/00221287-139-10-2495
*Arcobacter*molluscorum*							# DOI:10.1016/j.syapm.2010.10.001
*Arcobacter*bivalviorum*							# DOI:10.1016/j.syapm.2012.01.002
*Arcobacter*venerupis*								# DOI:10.1016/j.syapm.2012.01.002
*Staphylococcus*arlettae*							# DOI:10.1016/S0723-2020(84)80007-7
*Ochrobactrum*pecoris*								# DOI:10.1099/ijs.0.027631-0
*Prevotellaceae*Prevotella*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dichelobacter*nodosus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chthoniobacterales*Xiphinematobacter*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Pasteuria*penetrans*								# DOI:10.1111/j.1365-2672.1989.tb03389.x
*Lonepinella*koalarum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pasteurellaceae*Haemophilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Actinobacillus*equuli*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Yersinia*enterocolitica*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Yersinia*bercovieri*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Proteus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Proteus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Plesiomonas*shigelloides*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pantoea*agglomerans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hafnia*alvei*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacter*cloacae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Edwardsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Edwardsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Citrobacter*youngae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Citrobacter*koseri*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Citrobacter*amalonaticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Streptococcus*dysgalactiae*						# DOI:10.1099/00207713-46-3-774
*Francisella*halioticida*							# DOI:10.1111/j.1365-2672.2011.05133.x
*Mycoplasma*haemocanis*								# Messick et al. (2002) - Mycoplasma haemodidelphidis sp. nov., Mycoplasma haemolamae sp. nov. and Mycoplasma haemocanis comb. nov., haemotrophic parasites from a naturally infected opossum (Didelphis virginiana), alpaca (Lama pacos) and dog (Canis familiaris): phylogenetic and secondary structural re- latedness of their 16S rRNA genes to other mycoplasmas
*Mycoplasma*haemolamae*								# Messick et al. (2002) - Mycoplasma haemodidelphidis sp. nov., Mycoplasma haemolamae sp. nov. and Mycoplasma haemocanis comb. nov., haemotrophic parasites from a naturally infected opossum (Didelphis virginiana), alpaca (Lama pacos) and dog (Canis familiaris): phylogenetic and secondary structural re- latedness of their 16S rRNA genes to other mycoplasmas
*Mycoplasma*haemodidelphidis*						# Messick et al. (2002) - Mycoplasma haemodidelphidis sp. nov., Mycoplasma haemolamae sp. nov. and Mycoplasma haemocanis comb. nov., haemotrophic parasites from a naturally infected opossum (Didelphis virginiana), alpaca (Lama pacos) and dog (Canis familiaris): phylogenetic and secondary structural re- latedness of their 16S rRNA genes to other mycoplasmas
*Francisellaceae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pasteurellaceae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pasteurellaceae*Haemophilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Anaplasmataceae*Aegyptianella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Brucellaceae*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Burkholderia*mallei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Bordetella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcaligenaceae*Bordetella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Mycoplasma*elephantis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Eperythrozoon*parvum*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Corynebacterium*kutscheri*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermatophilaceae*Dermatophilus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cenarchaeum*symbiosum*								# Preston et al (1996). A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.
*Helicobacter*felis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*fennelliae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*hepaticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*mesocricetorum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*muridarum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*mustelae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*nemestrinae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*pametensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*rodentium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*salomonis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*trogontum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*typhlonius*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Campylobacteraceae*Campylobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Citrobacter*freundii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Fibrobacter*succinogenes*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fibrobacter*intestinalis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 4
*Synergistes*jonesii*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Coxiella*burnetii*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonadales*Moraxella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*fischeri*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*alginolyticus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*anguillarum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*harveyi*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*penaeicida*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*tapetis*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*trachuri*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*pectenicida*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*tubiashii*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*carchariae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aeromonas*hydrophila*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aeromonas*caviae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Anaerobiospirillum*succiniciproducens*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lachnospiraceae*Roseburia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Entomoplasmatales*Entomoplasmataceae*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Entomoplasmataceae*Entomoplasmataceae*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy




plant_pathogen			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Pantoea*agglomerans*								# DOI:10.1128/JCM.00632-07
*Clavibacter*michiganensis*							# DOI:10.1016/j.jbiotec.2003.07.011
*Xanthomonas*campestris*							# DOI:10.1111/nph.12187
*Xanthomonas*citri*									# DOI:10.1128/AEM.03091-14
*Erwinia*amylovora*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Erwinia*rhapontici*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Erwinia*persicina*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ralstonia*solanacearum*							# DOI:10.1038/415497a
*Xylella*fastidiosa*								# DOI:10.1038/35018003
*Pseudomonas*syringae*								# DOI:10.1126/science.295.5560.1722
*Herbaspirillum*rubrisubalbicans*					# DOI:0.1099/00207713-46-3-802
*Xylella*fastidiosa*								# DOI:10.1146/annurev.phyto.34.1.131
*Pseudomonas*syzygii*								# DOI:10.1146/annurev.phyto.34.1.131
*Clavibacter*xyli*									# DOI:10.1146/annurev.phyto.34.1.131
*Agrobacterium*tumefaciens*							# DOI:10.1038/303179a0
*Pseudomonas*solanacearum*							# Kelman (1954) - The relationship of pathogenicity of Pseudomonas solanacearum to colony appearance in a tetrazolium medium
*Ralstonia*solanacearum*							# Kelman (1954) - The relationship of pathogenicity of Pseudomonas solanacearum to colony appearance in a tetrazolium medium
*Agrobacterium*tumefaciens*							# DOI:10.1126/science.1066803
*Escherichia*coli*O157:H7*							# DOI:10.1016/j.foodcont.2005.11.009
*Listeria*monocytogenes*2812 1/2a*					# DOI:10.1016/j.foodcont.2005.11.009
*Salmonella*Typhimurium*SL 1344*					# DOI:10.1016/j.foodcont.2005.11.009
*Staphylococcus*aureus*								# DOI:10.1016/j.foodcont.2005.11.009
*Erwinia*carotovora*								# DOI:10.1046/j.1365-313X.1997.11010115.x
*Xanthomonas*citri*malvacearum*						# DOI:10.5897/AJMR11.1333
*Xanthomonas*euvesicatoria*							# DOI:10.1128/AEM.02399-08
*Xanthomonas*perforans*								# DOI:10.1094/PHYTO-99-9-1037
*Xanthomonas*vesicatoria*							# DOI:10.1016/j.cropro.2006.06.012
*Xanthomonas*gardneri*								# DOI:10.1094/PDIS.2004.88.2.157
*Xanthomonas*fuscans*								# DOI:10.1186/1471-2180-12-43
*Xanthomonas*euvesicatoria*							# DOI:10.1186/1471-2180-12-43
*Xanthomonas*axonopodis*							# DOI:10.1186/1471-2180-12-43
*Xanthomonas*vasicola*								# DOI:10.1186/1471-2180-12-43
*Xanthomonas*oryzae*								# DOI:10.1186/1471-2180-12-43
*Xanthomonas*albilineans*							# DOI:10.1186/1471-2180-12-43
# The list below was party obtained from the UK National Collection of Plant Pathogenic Bacteria
# Command used: 
#	./extract_regex_list_from_file.py -i NCPPB.html -o plan_pathogens.txt -n 'NCPPB No. (\d+):</a></font></b></td>\s*<td align="right" valign="top" class="fieldtext">Catalogue name: </td>\s*<td class="sfieldtext" align="left"><i>\s*(\w+) (\w+)\s*</i>' -e '*$2$*$3$* # UK National Collection of Plant Pathogenic Bacteria. NCPPB No: $1$' --comment_prefix_i  -v -f --add_header_to_output --unique --uniqueness_format '$2$ $3$'
# Note: Any existing strain-level resolution was omitted.
*Agrobacterium*radiobacter* 						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4
*Pectobacterium*atrosepticum*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 31
*Xanthomonas*campestris*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 45
*Pseudomonas*savastanoi*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 52
*Pectobacterium*carotovorum*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 66
*Pseudomonas*syringae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 79
*Rathayibacter*rathayi*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 80
*Clavibacter*michiganensis*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 83
*Erwinia*amylovora*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 100
*Xanthomonas*cassavae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 101
*Erwinia*herbicola*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 102
*Xanthomonas*axonopodis*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 109
*Pectobacterium*rhapontici*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 139
*Pseudomonas*viridilivida*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 152
*Rhodococcus*fascians*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 156
*Ralstonia*solanacearum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 173
*Curtobacterium*flaccumfaciens*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 177
*Pantoea*agglomerans*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 179
*Agrobacterium*pseudotsugae*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 180
*Xanthomonas*vasicola*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 182
*Xanthomonas*hyacinthi*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 205
*Xanthomonas*albilineans*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 208
*Agrobacterium*rhizogenes*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 223
*Xanthomonas*hortorum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 230
*Pseudomonas*putida*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 244
*Serratia*proteamaculans*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 245
*Pseudomonas*marginalis*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 247
*Pseudomonas*aeruginosa*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 249
*Rathayibacter*tritici*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 255
*Xanthomonas*arboricola*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 272
*Pseudomonas*cichorii*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 285
*Pseudomonas*beteli*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 323
*Burkholderia*caryophylli*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 349
*Acidovorax*avenae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 359
*Dickeya*zeae*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 377
*Pseudomonas*tolaasii*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 387
*Pseudomonas*viridiflava*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 389
*Pantoea*ananatis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 391
*Dickeya*dianthicola*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 393
*Xanthomonas*vesicatoria*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 422
*Erwinia*carnegieana*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 439
*Enterobacter*nimipressuralis*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 440
*Brenneria*salicis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 447
*Pantoea*stewartii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 449
*Burkholderia*andropogonis*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 450
*Dickeya*dadantii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 454
*Acetobacter*pasteurianus*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 461
*Herbaspirillum*rubrisubalbicans*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 519
*Pseudomonas*flectens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 538
*Brenneria*nigrifluens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 564
*Xanthomonas*stizolobiicola*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 583
*Burkholderia*gladioli*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 644
*Erwinia*billingiae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 652
*Pectobacterium*cypripedii*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 750
*Xanthomonas*pisi*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 762
*Xanthomonas*oryzae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 793
*Dickeya*dieffenbachiae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 911
*Burkholderia*cepacia*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 945
*Nocardia*vaccinii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 954
*Pseudomonas*asplenii*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 959
*Pseudomonas*fluorescens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 967
*Xanthomonas*translucens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 973
*Serratia*marcescens*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1126
*Xanthomonas*dyei*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1155
*Pseudomonas*cannabina*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1162
*Arthrobacter*ilicis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1228
*Bacillus*subtilis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1246
*Xanthomonas*fragariae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1469
*Xanthomonas*jasminii*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1568
*Pseudomonas*corrugata*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1617
*Xanthomonas*cynarae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1668
*Pseudomonas*hibiscicola*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1683
*Agrobacterium*vitis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1771
*Xanthomonas*beticola*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1831
*Enterobacter*dissolvens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1850
*Brenneria*quercina*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1852
*Agrobacterium*rubi*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1854
*Pseudomonas*caricapapayae*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1872
*Pseudomonas*cattleyae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1874
*Pantoea*dispersa*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1941
*Pseudomonas*pseudoalcaligenes*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1971
*Pseudomonas*stutzeri*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1973
*Stenotrophomonas*maltophilia*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1974
*Pseudomonas*agarici*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 1996
*Brenneria*rubrifaciens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2020
*Erwinia*tracheiphila*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2133
*Enterobacter*cancerogenus*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2176
*Xylophilus*ampelinus*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2217
*Rathayibacter*iranicus*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2253
*Xanthomonas*elusinea*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2278
*Burkholderia*glumae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2391
*Dickeya*paradisiaca*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2477
*Sphingomonas*paucimobilis*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2493
*Spiroplasma*citri*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2565
*Xanthomonas*cucurbitae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2567
*Pseudomonas*amygdali*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2607
*Pectobacterium*betavasculorum*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2792
*Erwinia*mallotivora*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2851
*Lactococcus*lactis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2939
*Xanthomonas*populi*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2951
*Pseudomonas*cissicola*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 2982
*Xanthomonas*marantae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3005
*Pseudomonas*meliae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3033
*Pseudomonas*flavescens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3063
*Pseudomonas*fuscovaginae*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3085
*Pseudomonas*gingeri*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3146
*Pseudomonas*blatchfordae*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3374
*Erwinia*persicinus*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3375
*Xanthomonas*melonis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3434
*Ralstonia*syzygii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3445
*Pseudomonas*tremae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3465
*Pseudomonas*avellenae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3487
*Clavibacter*toxicus*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3552
*Erwinia*psidii*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3555
*Burkholderia*plantarii*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3590
*Rhizomonas*suberifaciens*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3629
*Pseudomonas*ficuserectae*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3693
*Acidovorax*konjaci*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3697
*Pectobacterium*wasabiae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3701
*Pantoea*punctata*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3820
*Pantoea*terrea*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3822
*Pantoea*citrea*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3826
*Brenneria*alni*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3833
*Pectobacterium*cacticida*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3845
*Ewingella*americana*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3903
*Leuconostoc*mesenterioides*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3940
*Janthinobacterium*agaricidamnosum*  				# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 3945
*Streptomyces*reticuliscabiei*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4041
*Wautersia*eutropha*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4048
*Agrobacterium*larrymoorei*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4096
*Bacillus*pumilus*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4099
*Acidovorax*anthurii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4104
*Leifsonia*xyli*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4109
*Curtobacterium*albidum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4110
*Curtobacterium*citreum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4111
*Curtobacterium*luteum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4112
*Curtobacterium*pusillum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4113
*Hydrogenophaga*pseudoflava*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4118
*Hydrogenophaga*taeniospiralis*  					# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4119
*Phyllobacterium*rubiacearum*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4123
*Brevundimonas*diminuta*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4126
*Rhizobium*hauntlense*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4136
*Rhizobium*leguminosarum*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4138
*Rhizobium*tropici*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4144
*Sinorhizobium*fredii*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4145
*Sinorhizobium*meliloti*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4146
*Paenibacillus*polymyxa*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4162
*Burkholderia*multivorans*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4234
*Burkholderia*stabilis*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4238
*Burkholderia*vietnamensis*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4256
*Pseudomonas*thivervalensis*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4259
*Pseudomonas*brassicacearum*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4261
*Acidovorax*valerianellae*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4279
*Erwinia*papayae*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4294
*Brenneria*populi*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4296
*Brenneria*rubrifasciens*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4304
*Sphingomonas*melonis*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4319
*Xanthomonas*perforans*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4321
*Xanthomonas*gardneri*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4323
*Xanthomonas*sacchari*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4341
*Xanthomonas*bromi*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4343
*Samsonia*erythinae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4354
*Erwinia*tasmaniensis*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4357
*Xanthomonas*alfalfae*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4376
*Brevibacillus*laterosporous*  						# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4401
*Xanthomonas*codiaei*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4406
*Burkholderia*caledonica*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4420
*Burkholderia*ambifaria*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4421
*Burkholderia*sacchari*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4422
*Xylella*fastidiosa*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4432
*Gibbsiella*quercinecans*  							# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4470
*Erwinia*uzenensis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4474
*Dickeya*solani*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4479
*Lonsdalea*quercina*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4488
*Brenneria*roseae*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4581
*Gibbsiella*greigii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4583
*Xanthomonas*citri*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4590
*Pantoea*wallisii*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4591
*Pantoea*rwandensis*  								# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4592
*Pantoea*rodasii*  									# UK National Collection of Plant Pathogenic Bacteria. NCPPB No: 4593







oil_bioremediation			elements:C,H; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# oil, crude oil, kerosene
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Polymorphum*gilvum*								# DOI:10.1128/JB.00333-11
*Pseudomonas*nitroreducens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marinobacter*maritimus*							# DOI:10.1099/ijs.0.63478-0
*Marinobacter*aquaeolei*							# DOI:10.1099/00207713-49-2-367
*Marinobacter*hydrocarbonoclasticus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marinobacter*aquaeolei*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcanivorax*borkumensis*							# Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Thalassolituus*oleivorans*							# DOI:10.1099/ijs.0.02424-0
*Alcanivorax*jadensis*								# Munn (2011) - Marine Microbiology, chapter 4
*Marinospirillum*hydrocarbanoclasticus*				# Munn (2011) - Marine Microbiology, chapter 4
*Marinospirillum*aquaeoli*							# Munn (2011) - Marine Microbiology, chapter 4
*Neptunomonas*napthovorans*							# Munn (2011) - Marine Microbiology, chapter 4
*Cycloclasticus*pugetii*							# DOI:10.1007/s00248-002-3010-z
*Haloferax*haloarchaeon MSNC 4(1)*					# DOI:10.1007/s00792-010-0301-z
*Haloferax*haloarchaeon MSNC 14(3)*					# DOI:10.1007/s00792-010-0301-z
*Haloferax*haloarchaeon MSNC 16(6)*					# DOI:10.1007/s00792-010-0301-z
*Microbacterium*hydrocarbonoxydans*					# DOI:10.1099/ijs.0.63305-0
*Microbacterium*oleivorans*							# DOI:10.1099/ijs.0.63305-0
*Geobacillus*jurassicus*							# DOI:10.1016/j.syapm.2004.09.001    and    Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptomyces*albiaxialis*							# Kuznetsov et al. (1992) - Streptomyces albiaxialis sp. nov.-a new oil hydrocarbon degrading species of thermo- and halotolerant streptomyces
*Hoeflea*olei*										# DOI:10.1099/ijs.0.000277
*Geobacillus*subterraneus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*uzenensis*								# DOI:10.1099/00207713-51-2-433*



aromatic_hydrocarbon_degradation			elements:C,H; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Brachymonas*petroleovorans*						# DOI:10.1016/S0378-1097(03)00655-4
*Thauera*DNT-1*										# DOI:10.1128/AEM.70.3.1385–1392.2004
*Georgfuchsia*toluolica*							# DOI:10.1111/j.1574-6941.2009.00778.x
*Azoarcus*toluclasticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*tolulyticus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*toluvorans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Polaromonas*naphthalenivorans*						# DOI:10.1099/ijs.0.02636-0
*Marinobacter*nanhaiticus*							# DOI:10.1007/s10482-012-9830-z
*Desulfitobacterium*aromaticivorans*				# DOI:10.1099/ijs.0.003525-0
*Geobacter*toluenoxydans*							# DOI:10.1099/ijs.0.003525-0
*Kordiimonas*gwangyangensis*						# DOI:10.1099/ijs.0.63684-0
*Porticoccus*hydrocarbonoclasticus*					# DOI:10.1128/AEM.06398-11
*Celeribacter*indicus*								# DOI:10.1099/ijs.0.069039-0
*Thalassospira*xianhensis*							# DOI:10.1099/ijs.0.013201-0
*Thalassospira*tepidiphila*							# DOI:10.1099/ijs.0.65476-0
*Stenotrophomonas*maltophilia*C6*					# DOI:10.1016/j.ibiod.2013.01.012
*Martelella*AD-3*									# DOI:10.1128/genomeA.01189-13
*Mycobacterium*vanbaalenii*							# DOI:10.1128/JB.01310-06  and  DOI:10.1099/00207713-52-6-1997
*Algiphilus*aromaticivorans*						# DOI:10.1099/ijs.0.033324-0
*Saccharothrix*xinjiangensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudomonas*PN-1*									# Taylor et al. (1970) - Anaerobic Degradation of the Benzene Nucleus by a Facultatively Anaerobic Microorganism
*Cycloclasticus*pugetii*							# Dyksterhouse et al. (1995) - Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments
*Mycobacterium*vanbaalenii*							# Khan et al. (2002) - Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Myco- bacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov.
*Vibrio*cyclotrophicus*								# Hedlund et al. (2001) - Vibrio cyclotrophicus sp. nov., a polycyclic aromatic hydrocarbon (PAH)-degrading marine bacterium
*Sphingomonas*yanoikuyae*							# Khan et al. (1996) - Reclassification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Beijerinckia sp. strain B1, as Sphingomonas yanoikuyae by fatty acid analysis, protein pattern analysis, DNA–DNA hybridization, and 16S ribosomal DNA sequencing
*Rubrivivax*benzoatilyticus*						# Ramana et al. (2006) - Rubrivivax benzoatil- yticus sp. nov., an aromatic, hydrocarbon-degrading purple betaproteobacterium
*Novosphingobium*pentaromativorans*					# Sohn et al. (2004) - Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment
*Deltaproteobacterium*N47*							# DOI:10.1007/s00203-010-0667-4
*Pseudomonas*putida*								# DOI:10.1139/m97-051
*Pseudomonas*stutzeri*AN10*							# DOI:10.1016/S0378-1119(99)00241-3
*Thauera*aromatica*									# Biegert et al (1996). Evidence that anaerobic oxidation of toluene in the denitrifying bacterium Thauera aromatica is initiated by formation of benzylsuccinate from toluene and fumarate
*Desulfobacula*toluolica*							# Rabus et al (1993). Complete oxidation of toluene under strictly anoxic conditions by a new sulfate-reducing bacterium
*Azoarcus*tolulyticus*								# Zhou et al (1995). Phylogenetic analyses of a new group of denitrification capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov
*Azoarcus*evansii*									# DOI:10.1099/00207713-45-2-327
*Pseudomonas*mendocina*								# DOI:Yen (1991). Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase
*Burkholderia*cepacia*								# Mars et al (1996) Degradation of Toluene and Trichloroethylene by Burkholderia cepacia G4 in Growth-Limited Fed-Batch Culture
*Ralstonia*pickettii*								# DOI:10.1128/JB.186.10.3117-3123.2004
*Neptunomonas*naphthovorans*						# Hedlund et al. (1999) - Poly- cyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov.
*Gammaproteobacteria*Cycloclasticus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Cycloclasticus*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Comamonas*testosteroni*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Geobacter*grbiciae*								# Coates et al. (2001) - Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers
*Pseudomonas*fluorescens*							# DOI:10.1139/m97-051
*Pseudomonas*aeruginosa*							# DOI:10.1139/m97-051
*Sphingomonas*107*									# DOI:10.1139/m97-051
*Thauera*aromatica*									# Spormann and Widdel (2000) - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
*Blastochloris*sulfoviridis*						# Spormann and Widdel (2000) - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
*Azoarcus*tolulyticus*								# Spormann and Widdel (2000) - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
*Geobacter*metallireducens*							# Spormann and Widdel (2000) - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
*Desulfobacula*toluolica*							# Spormann and Widdel (2000) - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
*Desulfobacterium*cetonicum*						# Spormann and Widdel (2000) - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria
*Paenibacillus*naphthalenovorans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*validus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Marinobacter*hydrocarbonoclasticus*				# Gauthier et al. (1992) - Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
*Mycobacterium*pyrenivorans*						# DOI:10.1099/ijs.0.03003-0
*Flavobacteriales*Yeosuana*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Yeosuana*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Geothrix*fermentans*								# DOI:10.1099/00207713-49-4-1615
*Mycobacterium*frederiksbergense*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*fluoranthenivorans*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*hodleri*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiaceae*Rhodococcus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cycloclasticus*oligotrophus*						# Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Cycloclasticus*pugetii*							# Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Psychroserpens*burtonensis*						# Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Oceanospirillaceae*Neptunomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Vibrio*cyclitrophicus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rubrivivax*benzoatilyticus*						# Ramana et al. (2006) - Rubrivivax benzoatilyticus sp. nov., an aromatic, hydrocarbon-degrading purple betaproteobacterium
*Tropicibacter*naphthalenivorans*					# DOI:10.1099/ijs.0.65821-0
*Acinetobacter*calcoaceticus*RJE74*					# DOI:10.1111/j.1365-2958.1987.tb00515.x
*Burkholderia*kururiensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2





aromatic_compound_degradation			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no	
# non-lignin, non-xylan
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:aromatic_hydrocarbon_degradation
*Clostridium*formicoaceticum*						# DOI:10.1007/s002030050663
*Eubacterium*aggregans*								# DOI:10.1006/anae.1998.0179
*Holophaga*foetida*									# DOI:10.1007/BF00264378
*Methylibium*petroleiphilum*						# DOI:10.1146/annurev.micro.091208.073600
*Geopsychrobacter*electrodiphilus*					# DOI:10.1128/AEM.70.10.6023-6030.2004
*Pseudomonas*K172*									# DOI:10.1007/BF00414814
*Pseudomonas*S100*									# DOI:10.1007/BF00414814
*Thauera*aromatica*									# DOI:10.1099/00207713-45-2-327  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*evansii*									# DOI:10.1099/00207713-45-2-327  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Dehalococcoides*mccartyi*							# DOI:10.1099/ijs.0.034926-0
*Desulfosporosinus*Y5*								# DOI:10.1016/j.bbrc.2005.10.011
*Desulfoconvexum*algidum*							# DOI:10.1099/ijs.0.043703-0
*Marinobacterium*georgiense*						# DOI:10.1099/00207713-47-2-369
*Sporobacter*termitidis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acinetobacter*sp.*ADP1*							# DOI:10.1093/nar/gkh910
*Azoarcus*evansii*									# DOI:10.1111/j.1365-2958.2005.04637.x
*Burkholderia*xenovorans*							# DOI:10.1128/AEM.72.1.585-595.2006
*Geobacter*metallireducens*							# DOI:10.1196/annals.1419.010
*Desulfococcus*multivorans*							# DOI:10.1196/annals.1419.010
*Pseudomonas*putida*								# DOI:10.3390/ijerph6010278
*Sphingomonas*paucimobilis*							# DOI:10.3390/ijerph6010278
*Stenotrophomonas*maltophilia*						# DOI:10.3390/ijerph6010278
*Desulfococcus*cetonicum*							# DOI:10.1007/s11157-006-9118-8   and   DOI:10.1007/s002030050784
*Desulfosarcina*variabilis*							# DOI:10.1007/s11157-006-9118-8   and   DOI:10.1007/s002030050784
*Desulfococcus*multivorans*							# DOI:10.1007/s11157-006-9118-8   and   DOI:10.1007/s002030050784
*Thauera*phenylacetica*								# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Thauera*aminoaromatica*							# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Thauera*Azoarcus*									# DOI:10.5772/55920  and   DOI:10.1007/s00203-002-0422-6
*Sphingomonas*xenophaga*							# Stolz et al. (2000) - Description of Sphingomonas xenophagasp.nov.for strains BN6T and N,N which degrade xenobiotic aromatic compounds
*Moraxellaceae*Acinetobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadaceae*Marinobacterium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadaceae*Microbulbifer*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Clostridium*aminoralericum*						# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*bifermentans*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*botulinum*								# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*cochlearium*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*difficile*								# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*ghoni*									# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*histolyticum*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*lentoputrescens*						# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*limosum*								# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*lituseburense*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*malenomenatum*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*mangenoti*								# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*propionicum*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*sordellii*								# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*putrefaciens*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*sporogenes*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*sporosphaeroides*						# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*sticklandii*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*subterminale*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*tetani*								# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Clostridium*tetanomorphum*							# Elsden et al. (1976) - The End Products of the Metabolism of Aromatic Amino Acids by Clostridia
*Geobacillus*subterraneus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*uzenensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Syntrophorhabdus*aromaticivorans*					# DOI:10.1128/AEM.02378-07
*Halomonas*organivorans*							# Garcia et al. (2004) - Halomonas organivorans sp. nov., a moderate halophile able to degrade aromatic compounds
*Bacillus*benzoevorans*								# Pichinoty et al. (1984) - Biochemical characterization of Bacillus benzoevorans sp. nov., a new filamentous, sheathed mesophilic species, degrading various aromatic acids and phenols.
*Clostridium*methoxybenzovorans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acetobacterium*malicum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Acetobacterium*woodii*								# Bache et al. (1981) - Selective isolation of Acetobacterium woodii on methoxylated aromatic acids and determination of growth yields
*Lachnospiraceae*Parasporobacterium*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Sporobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Holophaga*foetida*									# Liesack et al (1994) - Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds
*Parasporobacterium*paucivorans*					# Lomans et al. (2001) - Obligate sulfide-dependent degradation of methoxylated aromatic compounds and formation of methanethiol and dimethyl sulfide by a freshwater sediment iso- late, Parasporobacterium paucivorans gen. nov., sp. nov.
*Peptococcaceae*Pelotomaculum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfotomaculum*gibsoniae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Pelotomaculum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# van de Pas et al. (2001) - Energy yield of respiration on chloroaromatic compounds in Desulfitobacterium dehalogenans.
*Sporobacter*termitidis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Papillibacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ruminococcaceae*Sporobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporomusa*aerivorans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halanaerobium*praevalens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Nocardioides*aromaticivorans*						# Kubota et al. (2005) - Nocardioides aromaticivorans sp. nov., a dibenzofuran-degrading bacterium isolated from dioxin-polluted environments
*Novosphingobium*taihuense*							# Liu et al. (2005) - Novosphingobium taihuense sp. nov., a novel aromatic-compound-degrading bacterium isolated from Taihu Lake, China
*Hydrocarboniphaga*effusa*							# Palleroni et al. (2004) - Hydrocarboniphaga effusa gen. nov., sp. nov., a novel member of the γ-Proteobacteria active in alkane and aromatic hydrocarbon degradation
*Sphingobium*aromaticiconvertens*					# DOI:10.1099/ijs.0.64433-0
*Yeosuana*aromativorans*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Holophagaceae*Holophaga*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Ilyobacter*insuetus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Gordonia*											# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioidaceae*Nocardioides*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Solirubrobacter*pauli*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Halobacterium*salinarum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloferax*alicantei*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1



aliphatic_non_methane_hydrocarbon_degradation			elements:C,H; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Algiphilus*aromaticivorans*						# DOI:10.1099/ijs.0.033324-0
*Alkanindiges*illinoisensis*						# DOI:10.1099/ijs.0.02568-0
*Planococcus*alkanoclasticus*						# Engelhardt et al. (2001) - Isolation and characterization of a novel hydrocarbon-degrading, Gram-positive bacterium, isolated from intertidal beach sediment, and description of Planococcus alkanoclasticus sp. nov.
*Oleiphilus*messinensis*							# Golyshin et al. (2002) - Oleiphilaceae fam. nov., to include Oleiphilus messinensis gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons
*Oleispira*antarctica*								# Yakimov et al. (2003) - Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water
*Dietzia*psychralcaliphila*							# Yumoto et al. (2002) - Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons
*Proteobacteria*Alcanivorax*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcanivoraceae*Alcanivorax*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Moraxella*lwoffi*									# Horisberger (1977) - Structure of the peptidoglycans of Moraxella glucidolytica and Moraxella lwoffi grown on hydrocarbons
*Moraxella*glucidolytica*							# Horisberger (1977) - Structure of the peptidoglycans of Moraxella glucidolytica and Moraxella lwoffi grown on hydrocarbons
*Methylosinus*trichosporium*						# Oldenhuis et al. (1989) - Degradation of chlorinated aliphatic hydrocarbons by Methylosinus trichosporium OB3b expressing soluble methane monooxygenase
*Geobacillus*stearothermophilus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*gargensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*jurassicus*							# DOI:10.1016/j.syapm.2004.09.001    and    Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermocatenulatus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermoleovorans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*uzenensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermoleovorans*						# DOI:10.1016/j.syapm.2006.04.003   and    Zarilla et al. (1987) - Bacillus thermoleovorans, sp. nov., a species of obligately thermophilic hydrocarbon utilizing endospore-forming bacteria
*Hydrocarboniphaga*effusa*							# DOI:10.1099/ijs.0.03016-0
*Hydrocarboniphaga*daqingensis*						# DOI:10.1099/ijs.0.019380-0
*Marinobacter*hydrocarbonoclasticus*				# Gauthier et al. (1992) - Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
*Nocardiaceae*Rhodococcus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*simplex*								# Yano et al. (1971) - Fatty acid composition of Arthrobacter simplex grown on hydrocarbons
*Pseudonocardia*petroleophila*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermoleophilum*minutum*							# DOI:10.1099/ijs.0.02425-0   and   Zarilla et al. (1986) - Deoxyribonucleic acid homology and other comparisons among obligately thermophilic hydrocarbonoclastic bacteria, with a proposal for Thermoleophilum minutum sp. nov.
*Alcanivorax*borkumensis*							# DOI:10.1128/AEM.00694-13  and  Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Alcanivorax*ST1*									# Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Marinobacter*CAB*									# Peter et al. (2003) - Genome Sequence Completed of Alcanivorax borkumensis, a Hydrocarbon-degrading Bacterium That Plays a Global Role in Oil Removal from Marine Systems
*Alcanivoraceae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B



hydrocarbon_degradation			elements:C,H; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:methanotrophy
add_group:aliphatic_non_methane_hydrocarbon_degradation
add_group:aromatic_hydrocarbon_degradation
*Halomonadaceae*Halomonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadales*Marinobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alteromonadaceae*Marinobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Streptomyces*albiaxialis*							# Kuznetsov et al. (1992) - Streptomyces albiaxialis sp. nov.-a new oil hydrocarbon degrading species of thermo- and halotolerant streptomyces
*Parvibaculum*hydrocarboniclasticum*				# DOI:10.1099/ijs.0.039594-0
*Tropicimonas*isoalkanivorans*						# DOI:10.1099/ijs.0.65822-0



dark_iron_oxidation			elements:Fe; main_element:Fe; electron_donor:Fe; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# dissimilatory Fe oxidation, lithotrophically or heterotrophically, not for photosynthesis
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Dechloromonas*agitata*								# DOI:10.1099/00207713-51-2-527
*Dechlorosoma*suillum*								# DOI:10.1007/s00248-001-1061-1
*Dechloromonas*UWNR4*								# DOI:10.1007/s11274-012-1217-9
*Thiomonas*arsenivorans*							# DOI:10.1007/s10482-005-9013-2
*Leptospirillum*rubarum*							# DOI:10.1128/AEM.02943-08
*Leptospirillum*ferrodiazotrophum*					# DOI:10.1128/AEM.02943-08  and  DOI:10.1128/AEM.71.10.6319–6324.2005
*Alicyclobacillus*tolerans*							# DOI:10.1099/ijs.0.63300-0
*Gammaproteobacteria*ES-1*							# Emerson and Moyer (1997) - Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH
*Gammaproteobacteria*ES-2*							# Emerson and Moyer (1997) - Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH
*Azospira*oryzae*PS*								# DOI:10.2138/rmg.2005.59.5
*Leptothrix*ochracea*								# DOI:10.2138/rmg.2005.59.5
*Acidovorax*BrG1*									# DOI:10.2138/rmg.2005.59.5
*Betaproteobacterium*2002*							# DOI:10.1128/AEM.72.1.686–694.2006
*Betaproteobacteria*BoFeN1*							# DOI:10.1111/j.1472-4669.2006.00056.x
*Marinobacter*santoriniensis*						# DOI:10.1099/ijs.0.003145-0
*Sideroxydans*paludicola*							# DOI:10.1080/01490450701670152
*Ferritrophicum*radicicola*							# DOI:10.1080/01490450701670152
*Sideroxydans*lithotrophicus*						# DOI:10.3389/fmicb.2012.00037
*Sulfolobus*acidocaldarius*							# Brock and Gustafson (1976) - Ferric iron reduction by sulfur- and iron-oxidizing bacteria
*Acidithiomicrobium*sp.*P1*							# DOI:10.4028/www.scientific.net/AMR.71-73.271  and  Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Acidithiomicrobium*sp.*P2*							# DOI:10.4028/www.scientific.net/AMR.71-73.271  and  Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Actinobacteria
*Sideroxydans*lithotrophicus*						# DOI:10.1371/journal.pone.0000667
*Gallionella*ferricapsiformans*						# DOI:10.1371/journal.pone.0000667
*Hyphomonas*jannaschiana*							# DOI:10.1371/journal.pone.0000667
*Gallionella*ES-2* 									# DOI:10.1146/annurev.micro.112408.134208
*Gallionella*ferruginea*							# DOI:10.1146/annurev.micro.112408.134208
*Sideroxydans*paludicola*							# DOI:10.1146/annurev.micro.112408.134208
*Ferritrophicum*radicicola*							# DOI:10.1146/annurev.micro.112408.134208
*Betaproteobacteria*TW2*							# DOI:10.1146/annurev.micro.112408.134208
*Thiobacillus*denitrificans*						# DOI:10.1146/annurev.micro.112408.134208
*Leptothrix*cholodnii*								# DOI:10.1146/annurev.micro.112408.134208
*Sphaerotilus*natans*								# DOI:10.1146/annurev.micro.112408.134208
*Leptothrix*discophora*								# DOI:10.1146/annurev.micro.112408.134208
*Acidithiobacillus*ferrooxidans*					# DOI:10.1146/annurev.micro.112408.134208
*Marinobacter*aquaeolei*							# DOI:10.1146/annurev.micro.112408.134208
*Mariprofundus*ferrooxydans*						# DOI:10.1146/annurev.micro.112408.134208  and  DOI:10.1099/mic.0.045344-0
*Rhodopseudomonas*palustris*						# DOI:10.1146/annurev.micro.112408.134208  and  DOI:10.1099/mic.0.045344-0
*Acidimicrobium*ferrooxidans*						# DOI:10.1146/annurev.micro.112408.134208
*Ferrimicrobium*acidiphilum*						# DOI:10.1146/annurev.micro.112408.134208
*Acidimicrobiaceae*Ferrimicrobium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Ferrithrix*thermotolerans*							# DOI:10.1146/annurev.micro.112408.134208
*Alicyclobacillus*tolerans*							# DOI:10.1146/annurev.micro.112408.134208
*Alicyclobacillus*disulfidooxidans*					# DOI:10.1146/annurev.micro.112408.134208
*Chlorobium*ferrooxidans*							# DOI:10.1146/annurev.micro.112408.134208
*Leptospirillum*ferrooxidans*						# DOI:10.1146/annurev.micro.112408.134208
*Leptospirillum*ferriphilum*						# DOI:10.1146/annurev.micro.112408.134208
*Aquifex*aeolicus*									# DOI:10.1146/annurev.micro.112408.134208
*Ferroplasma*cupricumulans*							# DOI:10.1146/annurev.micro.112408.134208
*Acidiplasma*aeolicum*								# DOI:10.1146/annurev.micro.112408.134208
*Ferroplasma*acidarmanus*							# DOI:10.1146/annurev.micro.112408.134208
*Ferroplasma*acidiphilum*							# DOI:10.1146/annurev.micro.112408.134208
*Ferroglobus*placidus*								# DOI:10.1146/annurev.micro.112408.134208
*Sulfolobus*metallicus*								# DOI:10.1146/annurev.micro.112408.134208
*Acidianus*brierleyi*								# DOI:10.1146/annurev.micro.112408.134208
*Metallosphaera*sedula*								# DOI:10.1146/annurev.micro.112408.134208
*Rhodovulum*robiginosum*							# DOI:10.1099/mic.0.045344-0
*Rhodovulum*iodosum*								# DOI:10.1099/mic.0.045344-0
*Rhodobacter*capsulatus*							# DOI:10.1099/mic.0.045344-0
*Paracoccus*ferrooxidans*							# DOI:10.1099/mic.0.045344-0
*Rhodobacter*SW2*									# DOI:10.1099/mic.0.045344-0
*Rhodomicrobium*vannielii*							# DOI:10.1099/mic.0.045344-0
*Gallionella*ferrugina*								# DOI:10.1099/mic.0.045344-0
*Gallionella*ES-2*									# DOI:10.1099/mic.0.045344-0
*Sideroxydans*ES-1*									# DOI:10.1099/mic.0.045344-0
*Sideroxydans*paludicola*							# DOI:10.1099/mic.0.045344-0
*Ferrovum*myxofaciens*								# DOI:10.1099/mic.0.045344-0
*Ferritrophicum*radicicola*							# DOI:10.1099/mic.0.045344-0
*Azospira*oryzae*									# DOI:10.1099/mic.0.045344-0
*Thiobacillus*denitrificans*						# DOI:10.1099/mic.0.045344-0
*Pseudogulbenkiania*2002*							# DOI:10.1099/mic.0.045344-0
*Aquabacterium*BrG2*								# DOI:10.1099/mic.0.045344-0
*Leptothrix*discophora*								# DOI:10.1099/mic.0.045344-0
*Acidovorax*BrG1*									# DOI:10.1099/mic.0.045344-0
*Acidovorax*ebreus*									# DOI:10.1099/mic.0.045344-0
*Acidithiobacillus*ferrivorans*						# DOI:10.1099/mic.0.045344-0
*Thiobacillus*prosperus*							# DOI:10.1099/mic.0.045344-0
*Thiodictyon*L7*									# DOI:10.1099/mic.0.045344-0
*Acidiferrobacter*thiooxydans*						# DOI:10.1099/mic.0.045344-0
*Mariprofundus*GSB2*								# DOI:10.1099/mic.0.045344-0
*Geobacter*metallireducens*							# DOI:10.1099/mic.0.045344-0
*Gallionellaceae*Gallionella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sideroxydans*lithotrophicus*						# DOI:10.1371/journal.pone.0000667
*Gallionella*ferricapsiformans*						# DOI:10.1371/journal.pone.0000667
*Archaeoglobaceae*Ferroglobus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Ammonifex*degensii*								# Kelly and Wood (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
*Ferrovibrio*denitrificans*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Sulfurihydrogenibium*azorense*						# DOI:10.1099/ijs.0.02790-0



iron_respiration			elements:Fe; main_element:Fe; electron_donor:variable; electron_acceptor:Fe; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfotomaculum*ferrireducens*					# DOI:10.1099/ijsem.0.001139
*Tepidibacillus*decaturensis*						# DOI:10.1099/ijsem.0.001295
*Desulfotomaculum*reducens*							# DOI:10.1099/ijsem.0.000786
*Orenia*metallireducens*							# DOI:10.1128/AEM.02382-16
*Geobacteraceae*Geoalkalibacter*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Geoalkalibacter*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria. Legacy taxonomy
*Desulfuromonadaceae*Desulfuromonas*				# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Melioribacter*roseus*								# DOI:10.1111/1462-2920.12067
*Rhodoferax*ferrireducens*							# DOI:10.1099/ijs.0.02298-0
*Metallibacterium*scheffleri*						# DOI:10.1099/ijs.0.042986-0
*Geopsychrobacter*electrodiphilus*					# DOI:10.1128/AEM.70.10.6023-6030.2004
*Clostridium*DY192*									# Third Institute of Oceanography, State Oceanic Administration (2011) Deep sea environments from different iron-reducing bacteria and the diversity of new species of Clostridium ferrireducens sp.nov. Isolation and identification (translation from Chinese)
*Shewanella*electrodiphila*							# DOI:10.1099/ijs.0.000345
*Geobacter*anodireducens*							# DOI:10.1099/ijs.0.061598-0
*Desulfonatronum*buryatense*						# DOI:10.1007/s00792-013-0567-z
*Ferrimonas*sediminum*								# DOI:10.1099/ijs.0.042408-0
*Ferrimonas*futtsuensis*							# DOI:10.1099/ijs.0.64399-0
*Shewanella*amazonensis*							# DOI:10.1099/00207713-48-3-965
*Georgfuchsia*toluolica*							# DOI:10.1111/j.1574-6941.2009.00778.x
*Acidicaldus*organivorus*							# DOI:10.1007/s00203-006-0087-7
*Acidiphilium*cryptum*JF-5*							# DOI:10.2138/rmg.2005.59.5
*Thiobacillus*thiooxidans*							# DOI:10.2138/rmg.2005.59.5
*Desulfuromonadaceae*Desulfuromusa*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromusa*kysingii*							# DOI:10.1111/j.1574-6941.2001.tb00768.x
*Geospirillum*barnesii*								# DOI:10.1111/j.1574-6941.2001.tb00768.x
*Rhodobacter*capsulatus*							# DOI:10.1111/j.1574-6941.2001.tb00768.x
*Desulfofrigus*oceanense*							# DOI:10.1111/j.1574-6941.2001.tb00768.x
*Desulfotalea*psychrophila*							# DOI:10.1111/j.1574-6941.2001.tb00768.x
*Shewanella*alga*									# DOI:10.1111/j.1574-6941.2001.tb00768.x
*Geobacteraceae*Dfrl*								# DOI:10.1016/S0723-2020(98)80054-4
*Geobacteraceae*Dfr2*								# DOI:10.1016/S0723-2020(98)80054-4
*Cellulomonas*ES6*									# DOI:10.1007/s10532-011-9457-1
*Acidiphilium*cryptum*								# DOI:10.1007/s10534-010-9360-y
*Thermoanaerobaculum*aquaticum*						# DOI:10.1099/ijs.0.051425-0
*Deferribacter*abyssi*								# DOI: 10.1099/ijs.0.02673-0
*Desulfotomaculum*hydrothermale*					# DOI:10.1099/ijs.0.65339-0
*Anaeromyxobacter*PSR-1*							# DOI:10.1128/AEM.00693-13
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Pyrobaculum*ferrireducens*							# DOI:10.1099/ijs.0.000027
*Geobacter*OR-1*									# DOI:10.1021/es400231x
*Shewanella*O23S*									# DOI:10.3390/ijms160714409
*Halarsenatibacter*silvermanii*						# DOI:10.1128/AEM.02614-08
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568–5580.2001
*Thermoanaerobacter*siderophilus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfosporosinus*orientis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sulfurospirillum*barnesii*							# DOI:10.1099/00207713-49-3-1177
*Klebsiella*FD-3*									# DOI:10.1016/j.biortech.2013.01.022
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Desulfovibrio*arcticus*							# DOI:10.1099/ijs.0.021451-0
*Carboxydothermus*pertinax*							# DOI:10.1099/ijs.0.031583-0
*Desulfitobacterium*hafniense*DCB-2*				# DOI:10.1186/1471-2180-12-21
*Desulfitobacterium*hafniense*						# DOI:10.1099/00207713-46-2-442
*Geobacter*toluenoxydans*							# DOI:10.1099/ijs.0.003525-0
*Desulfitobacterium*aromaticivorans*				# DOI:10.1099/ijs.0.003525-0
*Desulfotomaculum*reducens*							# DOI:10.1111/j.1462-2920.2010.02242.x
*Acidianus*manzaensis*								# DOI:10.1007/s00284-006-0151-1
*Geothermobacterium*ferrireducens*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Sulfurihydrogenibium*subterraneum*					# DOI:10.1099/ijs.0.02506-0
*Rhizomicrobium*electricum*							# DOI:10.1099/ijs.0.023580-0
*Aciditerrimonas*ferrireducens*						# DOI:10.1099/ijs.0.023044-0
*Acetobacteraceae*Acidicaldus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Deferribacter*autotrophicus*						# DOI:10.1099/ijs.0.006767-0
*Thermincola*ferriacetica*							# DOI:10.1007/s00792-006-0004-7
*Geoglobus*acetivorans*								# DOI:10.1099/ijs.0.011080-0
*Geothermobacter*ehrlichii*							# DOI:10.1128/AEM.69.5.2985–2993.2003
*Geoalkalibacter*subterraneus*						# DOI:10.1099/ijs.0.001537-0
*Geoalkalibacter*ferrihydriticus*					# DOI:10.1134/S0026261706060099
*Geobacter*uraniireducens*							# DOI:10.1099/ijs.0.65377-0
*Deferrisoma*camini*								# DOI:10.1099/ijs.0.038372-0
*Ardenticatena*maritima*							# DOI:10.1099/ijs.0.046532-0
*Pelobacter*carbinolicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Ferribacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Geobacteraceae*Geobacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*putrefaciens*							# Myers et al. (1993) - Role of menaquinone in the reduction of fumarate, nitrate, iron(III) and manganese(IV) by Shewanella putrefaciens 
*Bacillus*subterraneus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacter*hydrogenophilus*							# Coates et al. (2001) - Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers
*Geobacter*chapellei*								# Coates et al. (2001) - Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers
*Geobacter*grbiciae*								# Coates et al. (2001) - Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers
*Deferribacteraceae*Deferribacter*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Desulfobulbus*propionicus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Geobacter*sulfurreducens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Tindallia*texcoconensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Peptococcaceae*Desulfitobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfosporosinus*meridiei*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Anaeroarcus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carboxydothermus*ferrireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Thermovenabulum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geothrix*fermentans*								# DOI:10.1099/00207713-49-4-1615  and  Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Shewanella*alga*									# DOI:10.1021/es001261b
*Sulfurospirillum*barnesii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*putrefaciens*							# DOI:10.1016/S0016-7037(98)00243-9
*Geobacter*metallireducens*							# DOI:10.1016/S0016-7037(98)00243-9  and  DOI:10.1021/es800046z
*Shewanella*putrefaciens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*algae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*amazonensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*baltica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*frigidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*gelidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*oneidensis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidianus*sulfidivorans*							# DOI:10.1099/ijs.0.64846-0
*Fervidicella*metallireducens*						# DOI:10.1099/ijs.0.014670-0
*Thermovenabulum*gondwanense*						# DOI:10.1099/ijs.0.009886-0
*Ferrimonas*balearica*								# DOI:10.4056/sigs.1161239  and  DOI:10.1007/978-3-642-30141-4_69
*Aeromonas*hydrophila*								# DOI:10.1007/978-3-642-30141-4_69
*Bacillus*infernus*									# DOI:10.1007/978-3-642-30141-4_69
*Deferribacter*thermophilus*						# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromonas*acetexigens*						# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromonas*acetoxidans*						# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromonas*chloroethenica*						# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromonas*palmitatis*							# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromusa*bakii*								# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromusa*kysingii*							# DOI:10.1007/978-3-642-30141-4_69
*Desulfuromusa*succinoxidans*						# DOI:10.1007/978-3-642-30141-4_69
*Ferribacterium*limneticum*							# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*akaganeitreducens*						# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*arculus*									# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*chapellei*172*							# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*grbicium*TACP-2*							# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*humireducens*JW3*						# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*hydrogenophilus*H2*						# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*metallireducens*							# DOI:10.1007/978-3-642-30141-4_69
*Geobacter*sulfurreducens*							# DOI:10.1007/978-3-642-30141-4_69
*Geothrix*fermentans*								# DOI:10.1007/978-3-642-30141-4_69
*Geovibrio*ferrireducens*							# DOI:10.1007/978-3-642-30141-4_69
*Pelobacter*carbinolicus*							# DOI:10.1007/978-3-642-30141-4_69
*Pelobacter*venetianus*								# DOI:10.1007/978-3-642-30141-4_69
*Pyrobaculum*islandicum*							# DOI:10.1007/978-3-642-30141-4_69
*Pyrobaculum*aerophilum*							# DOI:10.1007/978-3-642-30141-4_69
*Shewanella*alga*									# DOI:10.1007/978-3-642-30141-4_69
*Shewanella*putrefaciens*							# DOI:10.1007/978-3-642-30141-4_69
*Shewanella*saccharophilia*							# DOI:10.1007/978-3-642-30141-4_69
*Sulfurospirillum*barnesii*							# DOI:10.1007/978-3-642-30141-4_69
*Thermotoga*maritima*								# DOI:10.1007/978-3-642-30141-4_69
*Thermoterrabacterium*ferrireducens*				# DOI:10.1007/978-3-642-30141-4_69
*Thermus*SA-01*										# DOI:10.1007/978-3-642-30141-4_69
*Thiobacillus*ferrooxidans*							# DOI:10.1007/978-3-642-30141-4_69
*Albidiferax*ferrireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ferribacterium*limneticum*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Anaeromyxobacter*dehalogenans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*desulfuricans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Desulfuromusa*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacteraceae*Geobacter*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Alkaliphilus*peptidofermentans*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*lacus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Archaeoglobi*placidus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Archaeoglobi*ahangari*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Archaeoglobi*acetivorans*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341
*Sulfurihydrogenibium*azorense*						# DOI:10.1099/ijs.0.02790-0







nitrate_respiration			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# dissimilatory nitrate respiration
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrate_denitrification
add_group:nitrate_ammonification
*Desulfotomaculum*ferrireducens*					# DOI:10.1099/ijsem.0.001139
*Sulfurovum*riftiae*								# DOI:10.1099/ijsem.0.001106
*Tepidibacillus*decaturensis*						# DOI:10.1099/ijsem.0.001295
*Archaeoglobaceae*Ferroglobus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Pyrodictiaceae*Pyrolobus*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Dechloromonas*UWNR4*								# DOI:10.1007/s11274-012-1217-9
*Desulfuromonadaceae*Desulfuromusa*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Dechloromonas*hortensis*							# DOI:10.1099/ijs.0.63404-0
*Rhodoferax*ferrireducens*							# DOI:10.1099/ijs.0.02298-0
*Ottowia*thiooxydans*								# DOI:10.1099/ijs.0.02727-0
*Phaeobacter*daeponensis*							# DOI:10.1099/ijs.0.64779-0
*Shewanella*electrodiphila*							# DOI:10.1099/ijs.0.000345
*Sulfurospirillum*multivorans*						# DOI:10.1038/srep13794
*Streptomyces*hainanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Geobacillus*thermocatenulatus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermodenitrificans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*thermodenitrificans*						# DOI:10.1099/00207713-51-2-433  and  Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aquaspirillum*elegans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acidovorax*NO1*									# DOI:10.1128/JB.06814-11
*Azospirillum*doebereinerae*						# DOI:10.1099/00207713-51-1-17  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Azospirillum*largimobile*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C, Table BCII.a.6
*Azospirillum*halopraeferens*						# DOI:10.1099/00207713-37-1-43
*Pseudomonas*azotoformans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Diaphorobacter*nitroreducens*						# DOI:10.2323/jgam.48.299
*Rhizobium*fredii*									# DOI:10.1111/j.1574-6968.1985.tb01008.x
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*nitroreducens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Thauera*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marinobacter*aquaeolei*							# DOI:10.1099/00207713-49-2-367
*Archaea*ANME-2D*									# DOI:10.1038/nature12375
*Methanoperedens*nitroreducens*						# DOI:10.1038/nature12375
*Shewanella*woodyi*									# DOI:10.1099/00207713-47-4-1034
*Bradyrhizobium*denitrificans*						# DOI:10.1016/j.syapm.2005.07.014
*Paracoccus*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*alkenifer*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*kocurii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*methylutens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*pantotrophus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*thicyanatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Paracoccus*versutus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BXII.a.68
*Thauera*chlorobenzoica*							# DOI:10.1099/00207713-51-2-589
*Thauera*aromatica*									# DOI:10.1099/00207713-51-2-589
*Thauera*linaloolentis*								# DOI:10.1099/00207713-51-2-589
*Thauera*terpenica*									# DOI:10.1099/00207713-51-2-589
*Thauera*mechernichensis*							# DOI:10.1099/00207713-51-2-589
*Thauera*selenatis*									# DOI:10.1099/00207713-51-2-589
*Thauera*terpenica*									# DOI:10.1099/00207713-51-2-589
*Proteobacteria*Magnetospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillaceae*Magnetospirillum*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Azoarcus*toluclasticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*tolulyticus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*toluvorans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azoarcus*evansii*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thioalbus*denitrificans*							# DOI:10.1099/ijs.0.024844-0
*Azoarcus*taiwanensis*								# DOI:10.1007/s00253-013-4976-9
*Shewanella*vesiculosa*								# DOI:10.1099/ijs.0.000737-0
*Bacillus*cereus*									# DOI:10.1111/j.1574-6968.1991.tb04848.x  and  Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Escherichia*coli*									# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Aquifex*pyrophilus*								# Huber et al (1992) - Aquifex pyrophilus gen. nov. sp. nov., Represents a Novel Group of Marine Hyperthermophilic Hydrogen-Oxidizing Bacteria
*Campylobacter*sputorum*bubulus*					# 10.1111/j.1574-6976.2002.tb00616.x
*Thiobacillus*thiophilus*							# DOI:10.1099/ijs.0.002808-0
*Starkeya*novella*									# DOI:10.1007/s002030000241  and  Taylor et al (1969) - New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus
*Thiobacillus*novellus*								# DOI:10.1007/s002030000241  and  Taylor et al (1969) - New Facultative Thiobacillus and a Reevaluation of the Heterotrophic Potential of Thiobacillus novellus
*Rhizobium*TNAU-14*									# DOI:10.1007/BF03175347
*Citrobacter*diversus*								# DOI:10.1007/s002530000363
*Pseudomonas*aeruginosa*							# DOI:10.1128/JB.00240-07
*Rhodopseudomonas*sphaeroides*						# DOI:10.1128/AEM.68.5.2140-2147.2002
*Pseudomonas*chlororaphis*							# DOI:10.1128/AEM.72.1.638–644.2006
*Pseudomonas*aureofaciens*							# DOI:10.1128/AEM.72.1.638–644.2006  and  Kluyver (1956) - Pseudomonas aureofaciens nov. Spec. and its pigments
*SUP05*												# DOI:10.1126/science.1175309  and  DOI:10.1073/pnas.1322132111  and  DOI:10.3389/fmars.2014.00018
*Arctic96BD-19*										# DOI:10.1126/science.1175309  and  DOI:10.1073/pnas.1322132111  and  DOI:10.3389/fmars.2014.00018
*Gammaproteobacteria*MLHE-1*						# DOI:10.1128/AEM.68.10.4795-4802.2002
*Acidovorax*BrG1*									# DOI:10.2138/rmg.2005.59.5
*Azospira*oryzae*PS*								# DOI:10.2138/rmg.2005.59.5
*Betaproteobacterium*2002*							# DOI:10.1128/AEM.72.1.686–694.2006
*Geobacter*metallireducens*							# DOI:10.1099/mic.0.045344-0
*Betaproteobacteria*BoFeN1*							# DOI:10.1111/j.1472-4669.2006.00056.x
*Intrasporangium*mesophilum*						# DOI:10.1099/ijs.0.029934-0
*Rhabdothermus*arcticus*							# DOI:10.1099/ijs.0.027839-0
*Oceanithermus*desulfurans*							# DOI: 10.1099/ijs.0.02962-0
*Deferribacter*abyssi*								# DOI: 10.1099/ijs.0.02673-0
*Vulcanithermus*mediatlanticus*						# DOI: 10.1099/ijs.0.02579-0
*Bacillus*macyae*									# DOI:10.1099/ijs.0.63059-0
*Anaeromyxobacter*PSR-1*							# DOI:10.1128/AEM.00693-13
*Sulfurospirillum*NP4*								# DOI:10.1061/(ASCE)0733-9372(2007)133:1(81)
*Pyrobaculum*ferrireducens*							# DOI:10.1099/ijs.0.000027
*Geobacter*OR-1*									# DOI:10.1021/es400231x
*Shewanella*O23S*									# DOI:10.3390/ijms160714409
*Marinobacter*santoriniensis*						# DOI:10.1099/ijs.0.003145-0
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Bacillus*selenatarsenatis*							# DOI:10.1099/ijs.0.64667-0
*Deferribacter*desulfuricans*						# DOI:10.1099/ijs.0.02479-0
*Sulfurospirillum*barnesii*							# DOI:10.1099/00207713-49-3-1177
*Sulfurospirillum*arsenophilum*						# DOI:10.1099/00207713-49-3-1177
*Desulfosporosinus*acididurans*						# DOI:10.1007/s00792-014-0701-6
*Desulfovibrio*cavernae*							# DOI:10.1078/0723202041748181
*Desulfitobacterium*hafniense*DCB-2*				# DOI:10.1186/1471-2180-12-21
*Tateyamaria*omphalii*								# DOI:10.1099/ijs.0.013524-0
*Halothiobacillus*HT1*								# Shi, Lin, Yuan & Zhao (2011) - Isolation and characterization of a novel sulfuroxidizing chemolithoautotroph Halothiobacillus from Pb polluted paddy soil
*Thioprofundum*hispidum*							# DOI:10.1099/ijs.0.026963-0
*Thialkalivibrio*nitratireducens*					# DOI:10.1099/ijs.0.02615-0
*Thiolapillus*brandeum*								# DOI:10.1371/journal.pone.0104959
*Sulfurovum*lithotrophicum*							# DOI:10.1099/ijs.0.03042-0
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341
*Campylobacter*jejuni*								# DOI:10.1128/JB.184.15.4187-4196.2002
*Geovibrio*thiophilus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Chrysiogenetes*arsenatis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Desulfurispirillum*indicum*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Natranaerobius*thermophilus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Wolinella*succinogenes*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*salexigens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*simplex*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*oxamicus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*termitidis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*profundus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*desulfuricans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Ferribacterium*limneticum*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Alicycliphilus*denitrificans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Celeribacter*neptunius*							# DOI:10.1099/ijs.0.014159-0
*Gillisia*sandarakina*								# DOI:10.1099/ijs.0.63527-0
*Thalassospira*profundimaris*						# DOI:10.1099/ijs.0.64544-0
*Aureitalea*marina*									# DOI:10.1099/ijs.0.031450-0
*Thalassospira*xiamenensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Thalassospira*profundimaris*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Thalassospira*tepidiphila*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Thalassospira*xianhensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Thalassospira*permensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ferrovibrio*denitrificans*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Rhizomicrobium*electricum*							# DOI:10.1099/ijs.0.023580-0
*Nautiliaceae*Caminibacter*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Deferribacter*autotrophicus*						# DOI:10.1099/ijs.0.006767-0
*Geothermobacter*ehrlichii*							# DOI:10.1128/AEM.69.5.2985–2993.2003
*Geoalkalibacter*subterraneus*						# DOI:10.1099/ijs.0.001537-0
*Cetia*pacifica*									# DOI:10.1099/ijs.0.000070
*Sulfurovum*NBC37-1*								# DOI:10.1073/pnas.0700687104
*Sulfurovum*aggregans*								# DOI:10.1099/ijs.0.065094-0
*Sulfurovum*lithotrophicum*							# DOI:10.1099/ijs.0.03042-0
*Sulfuriferula*multivorans*							# DOI:10.1099/ijs.0.000129
*Mizugakiibacter*sediminis*							# DOI:10.1099/ijs.0.064659-0
*Sulfuritalea*hydrogenivorans*						# DOI:10.1099/ijs.0.024968-0
*Thioalkalivibrio*nitratireducens*					# DOI:10.1016/j.biochi.2012.07.004
*Arhodomonas*aquaeolei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Arhodomonas*recens*								# DOI:10.1134/S002626171205013X
*Ardenticatena*maritima*							# DOI:10.1099/ijs.0.046532-0
*Bacillus*stamsii*									# DOI:10.1016/j.syapm.2015.06.004
*Ferrimonas*balearica*								# DOI:10.4056/sigs.1161239
*Magnetospirillum*aberrantis*						# Gorlenko et al (2011) - Magnetospirillum aberrantis sp. nov., a New Freshwater Bacterium with Magnetic Inclusions
*Flavobacterium*hydatis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sinorhizobium*meliloti*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Aquamicrobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Phyllobacteriaceae*Aquamicrobium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Magnetospirillum*magnetotacticum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azospirillum*largimobile*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azospirillum*doebereinerae*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Achromobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcaligenaceae*Achromobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Achromobacter*xylosoxidans*xylosoxidans*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Ferribacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Dechloromonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Dechlorosoma*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Comamonadaceae*Aquabacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sulfurospirillum*barnesii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bacillus*subterraneus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Rhizobiales*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Brucellaceae*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Geothrix*fermentans*								# DOI:10.1099/00207713-49-4-1615  and  Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Pseudomonas*stutzeri*								# DOI:10.5772/55920
*Garciella*nitratireducens*							# DOI:10.5772/55920
*Geobacillus*subterraneus*							# DOI:10.5772/55920
*Geobacillus*uzenensis*								# DOI:10.5772/55920
*Thermoproteaceae*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Pyrobaculum*aerophilum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Crenarchaeota*Desulfurococcales*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Halogeometricum*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Archaeoglobaceae*Ferroglobus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Nitrospirae*Thermodesulfovibrio*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Deferribacteraceae*Deferribacter*					# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Gammaproteobacteria*Arhodomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Ectothiorhodospiraceae*Arhodomonas*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Xanthomonadaceae*Stenotrophomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Gammaproteobacteria*Thiomargarita*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Thiotrichaceae*Thiomargarita*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Gammaproteobacteria*Thioploca*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Thiotrichaceae*Thioploca*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Pseudomonas*multiresinivorans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Shewanellaceae*Shewanella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alteromonadaceae*Shewanella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Alteromonadaceae*Alishewanella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pasteurellaceae*Pasteurella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Rhodobacteraceae*Gemmobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Rhizobiales*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Brucellaceae*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhizobiales*Aquamicrobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aminobacter*Aquamicrobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhizobiales*Nitrobacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bradyrhizobiaceae*Nitrobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Burkholderia*mallei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*pseudomallei*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*caryophylli*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*plantarii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*vandii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Ralstonia*eutropha*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderiaceae*Thermothrix*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Herbaspirillum*seropedicae*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Alcaligenes*denitrificans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Proteobacteria*Achromobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Alcaligenaceae*Achromobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Ideonella*dechloratans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hydrogenophilus*thermoluteolus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillum*psychrophilum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillum*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Prolinoborus*fasciculus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclaceae*Azoarcus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclaceae*Azospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclaceae*Dechlorosoma*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfovibrio*simplex*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfovibrionaceae*Bilophila*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfuromusa*kysingii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Geobacter*metallireducens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Geobacter*humireducens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*curvus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*gracilis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*rectus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*showae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sulfurospirillum*deleyianum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sulfurospirillum*arsenophilum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sulfurospirillum*barnesii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacteraceae*Wolinella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*macyae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*subterraneus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*pushchinoensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*amylolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*ayderensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*contaminans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*flavithermus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*kestanbolensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*voinovskiensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*flavithermus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Anoxybacillus*ayderensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*lituanicus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Gracilibacillus*dipsosauri*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Virgibacillus*halodenitrificans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*tertium*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*anaericanus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Selenihalanaerobacter*shriftii*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Ammonifex*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Moorella*thermoacetica*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteraceae*Thermanaeromonas*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermodesulfobiaceae*Thermodesulfobium*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*hafniense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Planctomyces*brasiliensis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetes*Schlesneria*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Schlesneria*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Skermania*piniformis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*globiformis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*nicotianae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*invictum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microlunatus*aurantiacus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Micropruina*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Halobacterium*noricense*							# DOI:10.1007/s00792-004-0403-6
*Haloarcula*japonica*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloarcula*marismortui*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloarcula*quadrata*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificaceae*Aquifex*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Desulfovibrio*furfuralis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 1
*Helicobacteraceae*Wolinella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alcaligenes*defragrans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Achromobacter*xylosoxidans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Desulfovibrio*furfuralis*							# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfovibrio*profundus*							# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfovibrio*oxamicus*							# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfovibrio*simplex*								# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfovibrio*multispirans*						# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfovibrio*termitidis*							# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfomaculum*thermobenzoicum*					# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulfobacterium*catecholicum*						# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Desulforhopalus*singaporenssi*						# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Thermodesulfovibrio*islandicus*					# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Thermodesulfobium*narugense*						# Barton and Hamilton (2007). Sulphate-Reducing Bacteria: Environmental and Engineered Systems, ISBN: 9780521854856
*Geobacter*argillaceus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*lovleyi*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*metallireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Burkholderia*insulsa*								# DOI:10.1099/ijs.0.064477-0




nitrate_reduction 			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# assimilatory or dissimilatory
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrate_respiration
*Euryarchaeota*Natronomonas*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Natronomonas*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Oceanisphaera*donghaensis*							# DOI:10.1099/ijs.0.64116-0
*Arcobacter*molluscorum*							# DOI:10.1016/j.syapm.2010.10.001
*Pseudorhodoferax*aquiterrae*						# DOI:10.1099/ijs.0.039842-0
*Mitsuaria*chitosanitabida*							# DOI:10.1099/ijs.0.63629-0
*Bhargavaea*cecembensis*							# DOI:10.1099/ijs.0.002691-0
*Cohnella*cellulosilytica*							# DOI:10.1099/ijs.0.032607-0
*Cohnella*damensis*									# Luo et al (2010) - Cohnella damensis sp. nov., a motile xylanolytic bacteria isolated from a low altitude area in Tibet
*Bacillus*methylotrophicus*							# DOI:10.1099/ijs.0.015487-0
*Bacillus*akibai*									# DOI:10.1099/ijs.0.63649-0
*Bacillus*cellulosilyticus*							# DOI:10.1099/ijs.0.63649-0
*Bacillus*hemicellulosilyticus*						# DOI:10.1099/ijs.0.63649-0
*Bacillus*wakoensis*								# DOI:10.1099/ijs.0.63649-0
*Bacillus*tusciae*									# DOI:10.1007/BF00408386
*Kyrpidia*tusciae*									# DOI:10.1007/BF00408386  and  DOI:10.4056/sigs.2144922
*Thermogemmatispora*carboxidivorans*				# DOI:10.1099/ijs.0.059675-0
*Arcicella*aurantiaca*								# DOI:10.1099/ijs.0.021527-0
*Ponticoccus*litoralis*								# DOI:10.1099/ijs.0.65612-0
*Pelagibaca*bermudensis*							# DOI:10.1099/ijs.0.64063-0
*Oceanicaulis*alexandrii*							# DOI:10.1099/ijs.0.02635-0
*Brachymonas*chironomi*								# DOI:10.1099/ijs.0.007211-0
*Bacillus*licheniformis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Hyphomonas*adhaerens*								# DOI:10.1099/00207713-50-2-459
*Halomicroarcula*pellucida*							# DOI:10.1099/ijs.0.049965-0
*Arcobacter*nitrofigilis*							# DOI:10.4056/sigs.912121
*Diaphorobacter*oryzae*								# DOI:10.1099/ijs.0.001669-0
*Pseudomonas*libanensis*							# Dabboussi et al (1999) - Pseudornonas libanensis sp. nov., a new species isolated from Lebanese spring waters
*Betaproteobacteria*ULPAs1*							# Weeger et al (1999) - Oxidation of arsenite to arsenate by a bacterium isolated from an aquatic environment. BioMetals 12:141-149
*Arenimonas*maotaiensis*							# DOI:10.1099/ijs.0.067769-0
*Lutibaculum*baratangense*							# DOI:10.1099/ijs.0.036350-0
*Phycicoccus*soli*									# DOI:10.1099/ijs.0.000265
*Aquipuribacter*nitratireducens*					# DOI:10.1099/ijs.0.000269
*Fodinibacter*luteus*								# DOI:10.1099/ijs.0.006882-0
*Oceaniovalibus*guishaninsula*						# DOI:10.1007/s00284-012-0081-z
*Pontibaca*methylaminivorans*						# DOI:10.1099/ijs.0.020172-0
*Rhodanobacter*thiooxydans*							# DOI:10.1099/ijs.0.65086-0
*Staleya*guttiformis*								# DOI:10.1099/00207713-50-1-303
*Zobellella*aerophila*								# DOI:10.1099/ijs.0.027466-0
*Shimia*haliotis*									# DOI:10.1099/ijs.0.053140-0
*Sediminimonas*qiaohouensis*						# DOI:10.1099/ijs.0.006965-0
*Silicibacter*lacuscaerulensis*						# DOI:10.1007/s007920050020
*Oceanicola*nitratireducens*						# DOI:10.1099/ijs.0.016311-0
*Marivita*geojedonensis*							# DOI:10.1099/ijs.0.039065-0
*Loktanella*koreensis*								# DOI:10.1099/ijs.0.64276-0
*Loktanella*pyoseonensis*							# DOI:10.1099/ijs.0.011072-0
*Citreimonas*salinaria*								# DOI:10.1099/ijs.0.64373-0
*Exiguobacterium*profundum*							# DOI:10.1099/ijs.0.64639-0
*Bacillus*bataviensis*								# DOI:10.1099/ijs.0.02723-0
*Bacillus*vireti*									# DOI:10.1099/ijs.0.02723-0
*Bacillus*soli*										# DOI:10.1099/ijs.0.02723-0
*Aquibacter*zeaxanthinifaciens*						# DOI:10.1099/ijs.0.052621-0
*Salinimicrobium*marinum*							# DOI:10.1099/ijs.0.019166-0
*Flavivirga*amylovorans*							# DOI:10.1099/ijs.0.033605-0
*Flavivirga*jejuensis*								# DOI:10.1099/ijs.0.033605-0
*Marinobacterium*mangrovicola*						# DOI:10.1099/ijs.0.067462-0
*Azoarcus*olearius*									# DOI:10.1099/ijs.0.050609-0
*Gaiella*occulta*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria
*Actinobacteria*Rubrobacter*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria
*Rubrobacteriaceae*Rubrobacter*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Actinobacteria. Legacy taxonomy
*Rheinheimera*perlucida*							# DOI:10.1099/ijs.0.64172-0
*Tistrella*mobilis*									# DOI:10.2323/jgam.48.335
*Tistrella*bauzanensis*								# DOI:10.1099/ijs.0.026930-0
*Persicobacter*psychrovividus*						# DOI:10.1099/ijs.0.016113-0
*Lewinella*antarctica*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - Other major lineages of Bacteria and the Archaea
*Dyella*japonica*									# DOI:10.1099/ijs.0.63377-0
*Elioraea*tepidiphila*								# DOI:10.1099/ijs.0.65294-0
*Rhizobium*herbae*									# DOI:10.1099/ijs.0.024943-0
*Cohnella*ferri*									# DOI:10.1007/s00284-011-9917-1
*Gracilibacillus*ureilyticus*						# DOI:10.1099/ijs.0.016808-0
*Phytohabitans*rumicis*								# DOI:10.1099/ijs.0.037747-0
*Micromonosporaceae*Hamadaea*						# DOI:10.1099/ijs.0.65548-0
*Myceligenerans*halotolerans*						# DOI:10.1099/ijs.0.024091-0
*Tersicoccus*phoenicis*								# DOI:10.1099/ijs.0.047134-0
*Enteroactinococcus*coprophilus*					# DOI:10.1099/ijs.0.034249-0
*Tumebacillus*lipolyticus*							# DOI:10.1099/ijsem.0.000576
*Tumebacillus*flagellatus*							# DOI:10.1099/ijs.0.045351-0
*Conexibacter*arvalis*								# DOI:10.1099/ijs.0.036095-0
*Conexibacter*woesei*								# DOI:10.1099/ijs.0.02400-0
*Pseudoruegeria*sabulilitoris*						# DOI:10.1099/ijs.0.066258-0
*Halorubrum*rubrum*									# DOI:10.1007/s10482-013-0002-6
*Desertibacter*roseus*								# DOI:10.1099/ijs.0.021246-0
*Hymenobacter*norwichensis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Aliivibrio*finisterrensis*							# DOI:10.1099/ijs.0.010710-0
*Rhodococcus*opacus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Haloarcula*californiae*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloarcula*vallismortis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloarcula*japonica*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloarcula*marismortui*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Halobaculum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halococcus*morrhuae*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halococcus*salifodinae*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Halococcus*saccharolyticus*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Haloferax*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Halorubrum*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Haloterrigena*turkmenica*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Natrinema*pellirubrum*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Natrosomonas*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Euryarchaeota*Natronorubrum*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Aquificae*Hydrogenobacter*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Deinococcus*geothermalis*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Deinococcus*radiopugnans*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermus*brockianus*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Thermus*oshimai*									# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Meiothermus*chliarophilus*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Meiothermus*silvanus*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chrysiogenetes*Chrysiogenes*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Ectothiorhodospira*shaposhnikovii*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Methylococcales*Methylosarcina*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Methylococcaceae*Methylosarcina*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Methylococcales*Methylosphaera*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Methylococcaceae*Methylosphaera*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Oceanospirillales*Balneatrix*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Oceanospirillaceae*Balneatrix*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Marinomonas*mediterranea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Marinospirillum*minutulum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alcanivoraceae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Hahellaceae*Hahella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Chromohalobacter*canadensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Chromohalobacter*israelensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pseudomonas*citronellolis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pseudomonas*luteola*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pseudomonas*rhodesiae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Azotobacter*chroococcum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Azotobacter*beijerinckii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Mesophilobacter*marinus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Moraxella*caprae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Moraxella*boevrei*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Acinetobacter*radioresistens*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enhydrobacter*aerosaccus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alteromonadales*Colwellia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Alteromonadaceae*Colwellia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Moritella*marina*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Moritella*japonica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pseudoalteromonas*haloplanktis*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pseudoalteromonas*atlantica*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Psychromonas*marina*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Vibrionaceae*Vibrio*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Aeromonadaceae*Aeromonas*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriales*Arsenophonus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Arsenophonus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Brenneria*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Brenneria*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Buchnera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Buchnera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Budvicia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Budvicia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Buttiauxella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Buttiauxella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Cedecea*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Cedecea*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Edwardsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Edwardsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Enterobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Enterobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Ewingella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Ewingella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Hafnia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Hafnia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Klebsiella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Kluyvera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Kluyvera*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Leclercia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Leclercia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Leminorella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Leminorella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Moellerella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Moellerella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Morganella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Morganella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Obesumbacterium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Obesumbacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Hafnia-Obesumbacterium*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriales*Plesiomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Plesiomonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Rahnella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Rahnella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Salmonella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Salmonella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Serratia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Serratia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Shigella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Shigella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Escherichia-Shigella*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriales*Tatumella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Tatumella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Enterobacteriales*Trabulsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Trabulsiella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Yersinia*intermedia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Yersinia*pestis*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriales*Yokenella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Enterobacteriaceae*Yokenella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B. Legacy taxonomy
*Pasteurellaceae*Actinobacillus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pasteurellaceae*Haemophilus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pasteurellaceae*Mannheimia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pasteurellaceae*Phocoenobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Skermanella*parooensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acidiphilium*multivorum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acetobacteraceae*Craurococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Craurococcus*roseus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracraurococcus*ruber*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Antarctobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomonas*adhaerens*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomonas*hirschiana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomonas*oceanitis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Proteobacteria*Roseinatronobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*Roseinatronobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Ruegeria*gelatinovorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiaceae*Ensifer*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Albibacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Methylocystaceae*Albibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Afipia*felis*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bradyrhizobiaceae*Agromonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Blastobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Blastobacter*aminooxidans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodopseudomonas*rhenobacensis*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobium*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobium*zavarzinii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquabacter*spiritensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Methylorhabdus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Methylorhabdus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Pedomicrobium*ferrugineum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Pedomicrobium*americanum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Pedomicrobium*australicum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Prosthecomicrobium*polyspheroidum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Seliberia*stellata*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Xanthobacter*autotrophicus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*cocovenenans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*multivorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderia*vietnamiensis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Burkholderiaceae*Cupriavidus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Herbaspirillum*rubrisubalbicans*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Herbaspirillum*frisingense*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Iodobacter*fluviatilis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Janthinobacterium*lividum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Telluria*mixta*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Alcaligenes*defragrans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Alcaligenes*latus*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Achromobacter*xylosoxidans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Achromobacter*piechaudii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Achromobacter*ruhlandii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Oligella*ureolytica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Gammaproteobacteria*Sutterella*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Alcaligenaceae*Sutterella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Hydrogenophaga*flava*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Gammaproteobacteria*Ideonella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Comamonadaceae*Ideonella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Thiobacillus*delicatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Methylophilus*methylotrophus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Methylobacillus*glycogenes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Methylobacillus*flagellatus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Neisseria*elongata*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Neisseria*flavescens*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Aquaspirillum*elegans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Spirillum*pleomorphum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Gammaproteobacteria*Chromobacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Neisseriaceae*Chromobacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Gammaproteobacteria*Eikenella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Neisseriaceae*Eikenella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Actinobacillus*actinomycetemcomitans*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Haemophilus*aphrophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Gammaproteobacteria*Catenococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Neisseriaceae*Catenococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Gammaproteobacteria*Morococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Neisseriaceae*Morococcus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodocyclaceae*Propionibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Desulfomonile*tiedjei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacteriovorax*stolpii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*lanienae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Arcobacter*butzleri*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Arcobacter*skirrowii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*canadensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*cholecystus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*cinaedi*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*felis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*ganmani*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*pametensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacter*pullorum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*subtilis*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*amyloliquefaciens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*atrophaeus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*licheniformis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*mojavensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*sonorensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*vallismortis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*agaradhaerens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*anthracis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*pseudomycoides*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*alcalophilus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*clarkii*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*cohnii*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*horti*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*krulwichiae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*okuhidensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*bataviensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*benzoevorans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*firmus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*funiculus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*horti*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*infernus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*krulwichiae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*lentus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*licheniformis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*mojavensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*novalis*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*niacini*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*okuhidensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*oleronius*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*psychrodurans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*pseudomycoides*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*psychrosaccharolyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*schlegelii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*simplex*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*siralis*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*soli*										# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*sonorensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*sporothermodurans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*thuringiensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*vireti*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*pacificus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacillus*salilacus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alkalibacillus*silvisoli*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*caldoxylosilyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermoglucosidasius*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Gracilibacillus*halotolerans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lentibacillus*salicampi*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lentibacillus*juripiscarius*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lentibacillus*lacisalsi*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lentibacillus*salarius*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Marinococcus*albus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Oceanobacillus*oncorhynchi*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Oceanobacillus*picturae*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pontibacillus*marinus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillaceae*Thalassobacillus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Virgibacillus*carmonensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Virgibacillus*halodenitrificans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Virgibacillus*marismortui*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Virgibacillus*necropolis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alicyclobacillus*herbarius*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Alicyclobacillus*sendaiensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*polymyxa*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*amylolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*apiarius*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*barengoltzii*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*brasilensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*chibensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*chitinolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*cineris*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*cookii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*curdlanolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*ehimensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*elgii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*favisporus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*glucanolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*graminis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*granivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*jamilae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*kobensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*koreensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*kribbensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*macerans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*massiliensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*motobuensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*odorifer*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*panacisoli*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*phyllosphaerae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*rhizosphaerae*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*terrae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*thiaminolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*wynnii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*xylanolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aneurinibacillus*aneurinilyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aneurinibacillus*migulanus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*brevis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*borstelensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*formosus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*laterosporus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*parabrevis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Filibacter*limicola*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Planococcaceae*Jeotgalibacillus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Planomicrobium*chinense*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Planomicrobium*mcmeekinii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*aureus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*capitis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*carnosus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*chromogenes*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*delphini*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*epidermidis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*equorum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*fleurettii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*gallinarum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*hyicus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*intermedius*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*lentus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*lugdunensis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*lutrae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*muscae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*nepalensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*piscifermentans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*saccharolyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*saprophyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*schleiferi*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*sciuri*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*simulans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*pseudintermedius*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*simiae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Salinicoccus*roseus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Salinicoccus*alkaliphilus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Salinicoccus*hispanicus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Salinicoccus*luteus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Salinicoccus*jeotgali*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*cellulofermentans*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*colicanis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*estertheticum*laramiense*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*saccharolyticum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Garciella*nitratireducens*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Lachnospiraceae*Anaerostipes*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Veillonella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Centipeda*periodontii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Veillonellaceae*Mitsuokella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Symbiobacterium*toebii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacter*thermohydrosulfuricus*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterium*thermosaccharolyticum*		# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Thermovenabulum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Flavobacterium*glaciei*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*hercynium*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*hibernum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*hydatis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*omnivorum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*pectinovorum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacterium*saccharophilum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Arenibacter*latericius*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Arenibacter*troitsensis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Arenibacter*certesii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulophaga*algicola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulophaga*fucicola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulophaga*pacifica*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chryseobacterium*daecheongense*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Epilithonimonas*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Epilithonimonas*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Formosa*algae*										# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Gaetbulibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Gaetbulibacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Gillisia*sandarakina*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Kordia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Kordia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Maribacter*sedimenticola*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Maribacter*aquivivus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Polaribacter*glomeratus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Salegentibacter*salegens*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Salegentibacter*agarivorans*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Sediminicola*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriaceae*Sediminicola*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Tenacibaculuma*maritimum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Tenacibaculuma*litoreum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Tenacibaculuma*ovolyticum*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Tenacibaculuma*skagerrakense*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Ulvibacter*litoralis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidia*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorphaceae*Brumimicrobium*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Sphingobacterium*siyangense*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sphingobacterium*thalpophilum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*terrae*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Dyadobactera*ginsengisoli*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagales*Emticicia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Emticicia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Flexibacter*ruber*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Hymenobacter*norwichensis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cyclobacteriaceae*Aquiflexum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cyclobacteriaceae*Belliella*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Flammeovirga*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bacteroidetes*Persicobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Persicobacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Spirochaeta*halophila*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Fusobacterium*ulcerans*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cetobacterium*somerae*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rubritalea*marina*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rubritalea*spongiae*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rubritalea*squalenifaciens*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Rubritalea*tangerina*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Opitutaceae*Opitutus*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomyces*limnophilus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Actinomyces*hominis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomyces*houstonensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arcanobacterium*abortisuis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Varibaculum*cambriense*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Catenulispora*subtropica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*canis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*casei*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*confusum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*doosanense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*durum*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*efficiens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*freiburgense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*glutamicum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*halotolerans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*kutscheri*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*macginleyi*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*marinum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*testudinoris*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*sphenisci*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*stationis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*vitaeruminis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ammoniagenes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*matruchotii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pilosum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*propinquum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pseudodiphtheriticum*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*sphenisci*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*stationis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*testudinoris*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*vitaeruminis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*cinnamea*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*kunjamensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*papillomatosis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*schimae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*novocastrense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*diernhoferi*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*rhodochrous*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*aetherivorans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*coprophilus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*gordoniae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*kroppenstedtii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*maanshanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*phenolicus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*pyridinivorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*ruber*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*tukisamuensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*zopfii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*sihwensis*								# Kim et al. (2003) - Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor
*Cryptosporangium*arvum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryptosporangium*aurantiacum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryptosporangium*minutisporangium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Geodermatophilus*obscurus*utahensis*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Geodermatophilus*obscurus*dictyosporus*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Modestobacter*multiseptatus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Modestobacter*versicolor*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sporichthya*polymorpha*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Glycomycesa*lechevalierae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Glycomycesa*rutgersensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Glycomycesa*sambucus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Jiangella*alba*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcus*antarcticus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micrococcus*endophyticus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*antarcticus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*ardleyensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*citreus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*creatinolyticus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*crystallopoietes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*defluvii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*koreensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*luteolus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*monumenti*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*nicotianae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*niigatensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*oryzae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*oxydans*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*parietis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*phenanthrenivorans*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*polychromogenes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*psychrochitiniphilus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*psychrophenolicus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*roseus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*soli*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*stackebrandtii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*uratoxydans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*rosea*										# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*carniphila*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*palustris*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*marina*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*palustris*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*polaris*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*varians*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rothia*dentocariosa*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rothia*amarae*										# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rothia*nasimurium*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rothia*mucilaginosa*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rothia*terrae*										# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Beutenbergia*cavernae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Miniimonas*arenae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Georgenia*muralis*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Georgenia*thermotolerans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinotalea*fermentans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brevibacterium*marinum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*composti*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*iranensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*persica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulomonas*xylanilytica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*alimentarium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*fresconis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*paraconglomeratum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*rhamnosum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*tyrofermentans*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*zhongshanense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermatophilus*chelonae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangium*calvum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Janibacter*limosus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Janibacter*hoylei*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Janibacter*melonis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Janibacter*terrae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Knoellia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Intrasporangiaceae*Kribbia*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Ornithinimicrobium*kibberense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Ornithinimicrobium*pekingense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Serinicoccus*marinus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Terrabacter*tumescens*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Terrabacter*aerolatus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tetrasphaera*elongata*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tetrasphaera*jenkinsii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Jonesia*denitrificans*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*lacticum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*aerolatum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*barkeri*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*flavescens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*gubbeenense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*indicum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*keratanolyticum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*ketosireducens*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*kribbense*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*liquefaciens*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*lindanitolerans*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*luteolum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*luticocti*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*terrae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*terregens*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*testaceum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*trichothecenolyticum*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*xylanilyticum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Agromyces*cerinus*nitratus*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryobacterium*mesophilum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryobacterium*psychrotolerans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryobacterium*roopkundense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Humibacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leifsonia*aquatica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leifsonia*aurea*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leifsonia*bigeumensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leifsonia*rubra*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leucobacter*chironomi*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Phycicola*gilvus*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Salinibacterium*xinjiangense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Promicromonospora*sukumoe*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulosimicrobium*cellulans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Isoptericola*variabilis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Isoptericola*dokdonensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Isoptericola*hypogeus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Xylanimicrobium*pachnodae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Xylanimonas*cellulosilytica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Ruania*albidiflava*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sanguibacter*antarcticus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*aurantiaca*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*halophytica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*nigra*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Micromonospora*pallida*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocatenispora*sera*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocatenispora*thailandica*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinoplanes*sichuanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinoplanes*xinjiangensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Couchioplanes*caeruleus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dactylosporangium*aurantiacum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dactylosporangium*variesporum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Longispora*albida*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propionibacteriaceae*Aestuariimicrobium*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Luteococcus*peritonei*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Luteococcus*sanguinis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microlunatus*phosphovorus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propioniferax*innocua*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tessaracoccus*bendigoensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardioides*aquiterrae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinopolymorpha*singaporensis*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Aeromicrobium*ginsengisoli*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardia*ailaonensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardia*alaniniphila*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinosynnema*mirum*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinosynnema*pretiosum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kibdelosporangium*philippinense*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kutzneria*viridogrisea*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kutzneria*albida*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lechevalieria*aerocolonigenes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lechevalieria*flava*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lechevalieria*fradiae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lechevalieria*xinjiangensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharomonospora*paurometabolica*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharomonospora*marina							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptoalloteichus*hindustanus						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermocrispum*municipale							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*aculeolatus							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*africanus								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*beijiangensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*brasiliensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*capillispiralis						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*cellulolyticus						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*durmitorensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*emeiensis								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*fumigatiscleroticus					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*glauciniger							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*hebeiensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*humiferus								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*kasugaensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*koyangensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*niger									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*nitrosporeus							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*pharetrae								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*purpureus								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*sanglieri								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*scopiformis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*sodiiphilus							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*speibonae								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*thermocarboxydovorans					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*thermocarboxydus						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*thermogriseus							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*thermospinosisporus					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*vitaminophilus						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*yanii									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kitasatospora*azatica								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kitasatospora*paracochleata						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kitasatospora*putterlickiae						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kitasatospora*sampliensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptacidiphilus*oryzae							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
**Streptosporangium*roseum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streposporangium*pseudovulgare						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*purpuratum						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*subroseum						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*violaceochromogenes				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptosporangium*yunnanense						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Acrocarpospora*pleiomorpha							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbispora*aerata								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbispora*amethystogenes						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbispora*mesophila								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbispora*chromogenes							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*pusilla									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*africana								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*recticatena								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*roseola									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*salmonea								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*rubra									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermopolyspora*flexuosa							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*gilva									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermobifida*halotolerans							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonospora*curvata							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Thermomonospora*chromogena							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocorallia*aurea								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomadura*atramentaria							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomadura*glauciflava							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomadura*pelletieri							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Slackia*faecicanis									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinobacteria*Rubrobacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
**Rubrobacteraceae*Rubrobacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5. Legacy taxonomy
*Conexibacter*woesei								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Patulibacter*minatonensis							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*vitaeruminis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*testudinoris*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*simulans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*sphenisci*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*stationis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*striatum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolicicoccus*subflavus*							# DOI:10.1099/ijs.0.010546-0
*Mycobacterium*austroafricanum*						# DOI:10.1099/00207713-33-3-460  and DOI:10.1007/s00253-005-0074-y
*Mycobacterium*brumae*								# DOI:10.1099/00207713-43-3-405
*Nocardia*vinacea*									# DOI:10.3209/saj.15_1
*Demequina*lutea*									# DOI:10.1099/ijs.0.004929-0
*Mobilicoccus*pelagius*								# DOI:10.2323/jgam.56.427
*Piscicoccus*intestinalis*							# DOI:10.2323/jgam.56.427
*Arsenicicoccus*bolidensis*							# DOI:10.1099/ijs.0.02918-0
*Intrasporangiaceae*Arsenicicoccus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arsenicicoccus*dermatophilus*						# DOI:10.1099/ijs.0.048546-0
*Marihabitans*asiaticum*							# DOI:10.1099/ijs.0.65210-0
*Compostimonas*suwonensis*							# DOI:10.1099/ijs.0.036343-0
*Naasia*aerilata*									# DOI:10.1099/ijs.0.046599-0
*Bacteroidetes*Persicobacter*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flammeovirgaceae*Persicobacter*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Gilvibacter*sediminis*								# DOI:10.1099/ijs.0.64628-0
*Rhodobacteraceae*Lentibacter*						# DOI:10.1099/ijs.0.029868-0
*Thiothrix*arctophila*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Paracraurococcus*ruber*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Staphylococcus*equorum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*equorum*linens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*gallinarum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*intermedius*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*lutrae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*piscifermentans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*saprophyticus*bovis*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*schleiferi*coagulans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*simulans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*pseudintermedius*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sphingobacterium*siyangense*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Corynebacterium*kutscheri*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pilosum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pseudodiphtheriticum*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*stationis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*vitaeruminis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*mysorens*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*niigatensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brevibacterium*marinum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Tetrasphaera*jenkinsii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5		
*Desulfovibrionaceae*Bilophila*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiobacillus*thioparus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiobacillus*aquaesulis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiobacillus*delicatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderiaceae*Cupriavidus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ancylobacter*polymorphus*							# DOI:10.1099/ijs.0.64118-0



nitrogen_respiration			elements:N; main_element:N; electron_donor:variable; electron_acceptor:N; aerobic:no; exclusively_prokaryotic:no; light_dependent:no
# dissimilatory reduction of nitrogen compounds
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:nitrate_respiration
add_group:nitrite_respiration
add_group:denitrification
add_group:nitrate_ammonification
add_group:nitrite_ammonification
add_group:anammox



fumarate_respiration			elements:C; main_element:C; electron_donor:variable; electron_acceptor:C; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Desulfuromonas*acetoxidans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*acetexigens*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*palmitatis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*chloroethenica*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*michiganensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*svalbardensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Rhodoferax*ferrireducens*							# DOI:10.1099/ijs.0.02298-0
*Thermoflexus*hugenholtzii*							# DOI:10.1099/ijs.0.055855-0
*Shewanella*electrodiphila*							# DOI:10.1099/ijs.0.000345
*Sulfurospirillum*multivorans*						# DOI:10.1038/srep13794
*Shewanella*loihica*								# DOI:10.1099/ijs.0.64354-0
*Bacillus*azotoformans*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Aquaspirillum*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Dechloromonas*denitrificans*						# DOI:10.1099/ijs.0.63484-0
*Arcobacter*nitrofigilis*							# DOI:10.4056/sigs.912121
*Escherichia*coli*									# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Desulfovibrio*gigas*								# DOI:10.1111/j.1574-6976.2002.tb00616.x
*Campylobacter*sputorum*bubulus*					# 10.1111/j.1574-6976.2002.tb00616.x
*Geobacteraceae*Dfrl*								# DOI:10.1016/S0723-2020(98)80054-4
*Geobacteraceae*Dfr2*								# DOI:10.1016/S0723-2020(98)80054-4
*Desulfotomaculum*auripigmentum*					# DOI:10.1099/ijs.0.02526-0
*Desulfosporosinus*auripigmenti*					# DOI:10.1099/ijs.0.02526-0
*Anaeromyxobacter*PSR-1*							# DOI:10.1128/AEM.00693-13
*Geobacter*OR-1*									# DOI:10.1021/es400231x
*Desulfitobacterium*hafniense*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*frappieri*						# DOI:10.1128/AEM.67.12.5568–5580.2001
*Desulfitobacterium*GBFH*							# DOI:10.1128/AEM.67.12.5568–5580.2001
*Sulfurospirillum*deleyianum*						# DOI:10.1007/BF02529969
*Desulfitispora*alkaliphila*						# DOI:10.1007/s00792-010-0310-y
*Shewanella*pealeana*								# DOI:10.1099/00207713-49-4-1341
*Desulfurispirillum*alkaliphilum*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Shewanella*pealeana*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Pasteurellaceae*Pasteurella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Aquaspirillum*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclaceae*Ferribacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Campylobacter*curvus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*gracilis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*rectus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Campylobacter*showae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Sulfurospirillum*arsenophilum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Helicobacteraceae*Wolinella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bacillus*subterraneus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Carboxydothermus*ferrireducens*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Firmicutes*Thermovenabulum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Desulfitobacterium*dehalogenans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*hafniense*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Desulfitobacterium*metallireducens*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3, Firmicutes
*Rhizomicrobium*electricum*							# DOI:10.1099/ijs.0.023580-0
*Anaeromyxobacter*dehalogenans*						# DOI:10.1128/AEM.68.2.893–900.2002
*Albidiferax*ferrireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Ferribacterium*limneticum*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Alphaproteobacteria and Betaproteobacteria
*Desulfatitalea*tepidiphila*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*desulfuricans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*longreachensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*longus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*magneticus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*marrakechensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*mexicanus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*oceani*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*vietnamensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*zosterae*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*profundus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*psychrotolerans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*salexigens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfovibrio*senezii*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*acetoxidans*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*acetexigens*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*palmitatis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*chloroethenica*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*michiganensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonas*svalbardensis*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Desulfuromonadaceae*Desulfuromusa*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*bemidjiensis*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*bremensis*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*chapellei*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*daltonii*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*hydrogenophilus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*lovleyi*									# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*pelophilus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*pickeringii*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*psychrophilus*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*sulfurreducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*thiogenes*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*toluenoxydans*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Geobacter*uraniireducens*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Wolinella*succinogenes*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Vibrio*succinogenes*								# DOI:10.1007/BF00405882
*Alkaliphilus*peptidofermentans*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Natranaerobius*thermophilus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Desulfosporosinus*youngiae*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Thermolithobacter*ferrireducens*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Firmicutes and Tenericutes
*Haloferax*volcanii*								# DOI:10.1099/00221287-137-6-1387
*Haloferax*denitrificans*							# DOI:10.1099/00221287-137-6-1387
*Halobacterium*halobium*							# DOI:10.1099/00221287-137-6-1387
*Geovibrio*thiophilus*								# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Meiothermus*granaticius*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Other major lineages of Bacteria and the Archaea
*Shewanella*frigidimarina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Shewanella*oneidensis*								# DOI:10.1128/AEM.05382-11
*Bacillus*macerans*									# DOI:10.1007/BF00381790
*Campylobacter*jejuni*								# DOI:10.1128/JB.184.15.4187-4196.2002
*Flavobacterium*odoratum*							# DOI:10.1099/00207713-28-1-14
*Flavobacterium*meningosepticum*					# DOI:10.1099/00207713-28-1-14
*Actinobacillus*actinomycetem*						# DOI:10.1099/00207713-28-1-7
*Actinobacillus*suis*								# DOI:10.1099/00207713-28-1-7
*Haemophilus*aegyptius*								# DOI:10.1099/00207713-28-1-7
*Haemophilus*agni*									# DOI:10.1099/00207713-28-1-7
*Haemophilus*aphrophilus*							# DOI:10.1099/00207713-28-1-7
*Haemophilus*ducreyi*								# DOI:10.1099/00207713-28-1-7
*Haemophilus*influenzae*							# DOI:10.1099/00207713-28-1-7
*Haemophilus*paraphrophilus*						# DOI:10.1099/00207713-28-1-7
*Haemophilus*parahaemolyticus*						# DOI:10.1099/00207713-28-1-7
*Haemophilus*somnus*								# DOI:10.1099/00207713-28-1-7
*Pasteurella*bettii*								# DOI:10.1099/00207713-28-1-7
*Pasteurella*pneumotropica*							# DOI:10.1099/00207713-28-1-7
*Actinobacillus*lignieresii*						# DOI:10.1099/00207713-28-1-7
*Actinobacillus*seminis*							# DOI:10.1099/00207713-28-1-7
*Haemophilus*haemoglobinophilus*					# DOI:10.1099/00207713-28-1-7
*Haemophilus*paragallinarum*						# DOI:10.1099/00207713-28-1-7
*Haemophilus*parasuis*								# DOI:10.1099/00207713-28-1-7
*Pasteurella*gallinarum*							# DOI:10.1099/00207713-28-1-7
*Pasteurella*mastitidis*							# DOI:10.1099/00207713-28-1-7
*Pasteurella*multocida*								# DOI:10.1099/00207713-28-1-7
*Pasteurella*ureae*									# DOI:10.1099/00207713-28-1-7
*Pasteurella*piscicida*								# DOI:10.1099/00207713-28-1-7
*Helicobacter*pylori*								# DOI:10.1006/mpat.2000.0391




intracellular_parasites			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Parachlamydiaceae*Neochlamydia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Parachlamydiaceae*Protochlamydia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Parachlamydiaceae*Parachlamydia*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chlamydiae*										# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flavobacteriales*Blattabacterium*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Alphaproteobacteria*Rickettsiales*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Holosporaceae*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Brucellaceae*Brucella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Simkaniaceae*Fritschea*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Waddliaceae*Waddlia*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Legionellales*										# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Coxiellaceae*Coxiella*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2



chlorate_reducers			elements:C; main_element:C; electron_donor:variable; electron_acceptor:Cl; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Rhodocyclaceae*Dechloromonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodocyclaceae*Dechlorosoma*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Dechloromonas*hortensis*							# DOI:10.1099/ijs.0.63404-0



predatory_or_exoparasitic			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Bacteriovoracaceae*Bacteriovorax*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Micavibrionales*Micavibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bacteriovoracaceae*Micavibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Bacteriovoracaceae*Vampirovibrio*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderiaceae*Cupriavidus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Deltaproteobacteria*Halobacteriovorax*				# DOI:10.1099/ijs.0.070201-0  and  DOI:10.1128/AEM.03136-15  and  DOI:10.1038/ismej.2015.129
*Bdellovibrionaceae*								# Dominik Schwudke (2003) Biochemical and genetic approaches for the characterization of Bdellovibrionaceae, unique predatory bacteria (PhD Thesis)
*Haliangiaceae*Haliangium*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria
*Myxococcales*Phaselicystidaceae*					# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Deltaproteobacteria and Epsilonproteobacteria




chloroplasts			elements:C,O; main_element:C; electron_donor:O; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*chloroplast*



cyanobacteria			elements:C,O; main_element:C; electron_donor:O; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# non-chloroplasts
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*cyanobacteria*
subtract_group:chloroplasts



anoxygenic_photoautotrophy_H2_oxidizing			elements:H,C; main_element:H; electron_donor:H; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Ectothiorhodospira*mobilis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospira*marismortui*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospira*shaposhnikovii*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospira*vacuolata*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacter*blasticus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacter*sphaeroides*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*sulfidophilum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*euryhalinum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*iodosum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*robiginosum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodopseudomonas*palustris*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillum*rubrum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Oscillatoria*limnetica*							# Belink and Padan (1978). Hydrogen Metabolism in the Facultative Anoxygenic Cyanobacteria (Blue-Green Algae) Oscillatoria limnetica and Aphanothece halophytica
*Aphanothece*halophytica*							# Belink and Padan (1978). Hydrogen Metabolism in the Facultative Anoxygenic Cyanobacteria (Blue-Green Algae) Oscillatoria limnetica and Aphanothece halophytica
*Rhodomicrobium*vannielii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclus*purpureus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclus*tenuis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodoblastus*acidophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rubrivivax*gelatinosus*							# DOI:10.1128/JB.00511-12  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Oscillochloris*trichoides*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Rhodovastum*atsumiense*							# DOI:10.2323/jgam.55.43
*Halochromatium*salexigens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lamprobacter*modestohalophilus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marichromatium*gracile*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*violacea*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*violascens*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiohalocapsa*halophila*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospira*mobilis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodoferax*antarcticus*							# DOI:10.1007/s002030000140



anoxygenic_photoautotrophy_S_oxidizing			elements:S,C; main_element:S; electron_donor:S; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# anoxygenic photoautotrophy using reduced sulfur compounds for electrons
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Rhizobiales*Rhodoplanes*							# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Rhodoplanes*						# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Chloroflexus*aggregans*							# DOI:10.1264/jsme2.ME11348
*Chlorobaculum*tepidum*								# DOI:10.1099/mic.0.044669-0
*Chromatiaceae*Marichromatium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Lamprocystis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Lamprobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Isochromatium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Halochromatium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Allochromatium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Chromatium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Pfennigia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Rhabdochromatium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thermochromatium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thioalkalicoccus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiocapsa*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiococcus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiocystis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiodictyon*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thioflavicoccus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiohalocapsa*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiolamprovum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiopedia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiorhodococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiorhodovibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Thiospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodovulum*imhoffii*								# DOI:10.1099/ijs.0.64470-0
*Rhodovulum*tesquicola*								# DOI:10.1099/ijs.0.035857-0
*Chlorobium*limicola*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chromatiaceae*Chromatium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiaceae*Allochromatium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospirales*Ectothiorhodospiraceae*		# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromatiales*Ectothiorhodospiraceae*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Gammaproteobacteria*Thiorhodospira*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Halothiobacillaceae*Thiorhodospira*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Ectothiorhodospiraceae*Ectothiorhodospira*			# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Proteobacteria*Roseospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Roseospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacter*sphaeroides*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacter*veldkampii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacter*azotoformans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*sulfidophilum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*euryhalinum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*iodosum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*robiginosum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*adriaticum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodovulum*strictum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodopseudomonas*palustris*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodopseudomonas*julia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillum*rubrum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Roseospira*mediosalina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodoplanes*roseus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodoplanes*elegans*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Chloroflexus*aurantiacus*							# DOI:10.1007/BF00446302  and  DOI:10.1186/1471-2164-12-334
*Chromatiaceae*Halochromatium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodomicrobium*vannielii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobium*marinum*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobium*orientis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Gammaproteobacteria*Halorhodospira*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospiraceae*Halorhodospira*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Blastochloris*sulfoviridis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Blastochloris*viridis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodopila*globiformis*								# Rosenberg and Schleifer (2006) - The Prokaryotes: Vol. 2: Ecophysiology and Biochemistry, ISBN: 9780387254920
*Oscillochloris*trichoides*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chlorobia*Chlorobium*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chlorosi*Chlorobium*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Chlorobia*Ancalochloris*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chlorobi*Ancalochloris*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Chlorobia*Chloroherpeton*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chlorobi*Chloroherpeton*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Chlorobia*Pelodictyon*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chlorobi*Pelodictyon*								# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Chlorobia*Prosthecochloris*						# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Chlorobi*Prosthecochloris*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1. Legacy taxonomy
*Halochromatium*salexigens*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lamprobacter*modestohalophilus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marichromatium*gracile*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocapsa*litoralis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocapsa*pendens*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*violacea*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*violascens*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiohalocapsa*halophila*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospira*mobilis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ectothiorhodospira*marina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BCII.a.47
*Rhodobacter*azotoformans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BCII.a.47
*Rhodobacter*sphaeroides*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BCII.a.47
*Rhodobacter*veldkampii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2, Table BCII.a.47
*Ancalochloris*perfilievii*							# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobaculum*chlorovibrioides*					# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobaculum*limnaeum*							# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobaculum*parvum*								# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobaculum*tepidum*								# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobaculum*thiosulfatiphilum*					# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobium*chlorochromatii*						# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobium*clathratiforme*							# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobium*ferrooxidans*							# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobium*limicola*								# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobium*luteolum*								# DOI: 10.1016/S0065-2911(08)00002-7
*Chlorobium*phaeobacteroides*						# DOI: 10.1016/S0065-2911(08)00002-7
*Chloroherpeton*thalassium*							# DOI: 10.1016/S0065-2911(08)00002-7
*Prosthecochloris*aestuarii*						# DOI: 10.1016/S0065-2911(08)00002-7
*Prosthecochloris*vibrioformis*						# DOI: 10.1016/S0065-2911(08)00002-7
*Marichromatium*gracile*							# DOI: 10.1016/S0065-2911(08)00002-7
*Thiocapsa*pendens*									# DOI: 10.1016/S0065-2911(08)00002-7
*Thiocapsa*litoralis*								# DOI: 10.1016/S0065-2911(08)00002-7
*Halorhodospira*halophila*							# DOI: 10.1016/S0065-2911(08)00002-7





anoxygenic_photoautotrophy_Fe_oxidizing			elements:Fe,C; main_element:Fe; electron_donor:Fe; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Rhodovulum*iodosum*								# DOI:10.2138/rmg.2005.59.5
*Rhodomicrobium*vannielii*							# DOI:10.2138/rmg.2005.59.5
*Rhodopseudomonas*palustris*						# DOI:10.2138/rmg.2005.59.5
*Rhodovulum*robiginosum*							# DOI:10.2138/rmg.2005.59.5
*Rhodobacter*ferrooxidans*							# DOI:10.2138/rmg.2005.59.5
*Chlorobium*ferrooxidans*							# DOI:10.2138/rmg.2005.59.5




anoxygenic_photoautotrophy			elements:C,variable; main_element:variable; electron_donor:variable; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:anoxygenic_photoautotrophy_H2_oxidizing
add_group:anoxygenic_photoautotrophy_S_oxidizing
add_group:anoxygenic_photoautotrophy_Fe_oxidizing
*Rhodobacteraceae*Rhodovulum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Roseicyclus*mahoneyensis*							# DOI:10.1007/s11120-011-9718-1  and  DOI:10.1099/ijs.0.63195-0
*Porphyrobacter*meromictius*						# DOI:10.1007/s11120-011-9718-1
*Chlorobi*Chlorobiaceae*							# DOI:10.1016/j.tim.2006.09.001  and  DOI:10.1186/1471-2148-7-71  and  Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Hoeflea*olei*										# DOI:10.1099/ijs.0.000277



oxygenic_photoautotrophy			elements:C,O; main_element:C; electron_donor:O; electron_acceptor:C; aerobic:yes; exclusively_prokaryotic:no; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:cyanobacteria



photoautotrophy			elements:C,variable; main_element:C; electron_donor:variable; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:no; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:oxygenic_photoautotrophy
add_group:anoxygenic_photoautotrophy





aerobic_anoxygenic_phototrophy			elements:C; main_element:C; electron_donor:C; electron_acceptor:C; aerobic:yes; exclusively_prokaryotic:yes; light_dependent:yes
# a type of photoheterotrophy
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Erythrobacter*sibiricus*							# Yurkov et al. (1990). Erythrobacter sibiricus sp. nov., a new freshwater aerobic bacterial species containing bacteriochlorophyll a; DOI: 10.1007/BF00244268
*Erythromicrobium*hydrolyticum*						# Yurkov et al. (1990). Erythrobacter sibiricus sp. nov., a new freshwater aerobic bacterial species containing bacteriochlorophyll a; DOI: 10.1007/BF00244268
*Erythrobacter*longus*								# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Erythrobacter*Och175*								# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Roseobacter*litoralis*								# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Roseobacter*denitrificans*							# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Methylobacterium*rhodesianum*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Methylobacterium*radiotolerans*					# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Methylobacterium*extorquens*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Methylobacterium*zatmanii*							# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Methylobacterium*fujisawaense*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Methylobacterium*rhodinum*							# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Porphyrobacter*neustonensis*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Rhizobium*BTAil*									# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Acidiphilium*rubrum*								# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Acidiphilium*angustum*								# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Acidiphilium*cryptum*								# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Erythromicrobium*sibiricum*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Erythromicrobium*ezovicum*							# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Erythromicrobium*hydrolyticum*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Erythromicrobium*ursincola*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Erythromicrobium*ramosum*							# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Roseococcus*thiosulfatophilum*						# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Rhodobacter*sphaeroides*							# Anoxygenic Photosynthetic Bacteria (1995). Eds: Robert E. Blankenship, Michael T. Madigan, Carl E. Bauer
*Rhodobacter*capsulatus*							# DOI:10.1038/415630a
*Rhodovulum*sulfidophilum*							# DOI:10.1038/415630a
*Erythrobacter*litoralis*							# DOI:10.1038/415630a
*Sphingomonas*natatoria*							# DOI:10.1038/415630a
*Rhodomicrobium*vannielii*							# DOI:10.1038/415630a
*Rhodopseudomonas*palustris*						# DOI:10.1038/415630a
*Rhodospirillum*rubrum*								# DOI:10.1038/415630a
*Rubrivivax*gelatinosus*							# DOI:10.1038/415630a
*Roseateles*depolymerans*							# DOI:10.1038/415630a
*Rhodoferax*fermentans*								# DOI:10.1007/BF00243451  and  DOI:10.1038/415630a
*Rhodocyclus*tenuis*								# DOI:10.1038/415630a
*Thiocystis*gelatinosa*								# DOI:10.1038/415630a
*Allochromatium*vinosum*							# DOI:10.1038/415630a
*Chloroflexus*aurantiacus*							# DOI:10.1038/415630a
*Congregibacter*litoralis*							# DOI:10.1371/journal.pone.0004866
*Rubritepida*flocculans*							# DOI:10.1007/978-1-4020-8815-5_3
*Roseococcus*thiosulphatophilus*					# DOI:10.1007/978-1-4020-8815-5_3
*Paracraurococcus*ruber*							# DOI:10.1007/978-1-4020-8815-5_3
*Craurococcus*roseus*								# DOI:10.1007/978-1-4020-8815-5_3
*Acidisphaera*rubrifaciens*							# DOI:10.1007/978-1-4020-8815-5_3
*Acidiphilium*acidophilum*							# DOI:10.1007/978-1-4020-8815-5_3
*Acidiphilium*rubrum*								# DOI:10.1007/978-1-4020-8815-5_3
*Acidiphilium*angustum*								# DOI:10.1007/978-1-4020-8815-5_3
*Acidiphilium*crypum*								# DOI:10.1007/978-1-4020-8815-5_3
*Acidiphilium*organovorum*							# DOI:10.1007/978-1-4020-8815-5_3
*Acidiphilium*multivorum*							# DOI:10.1007/978-1-4020-8815-5_3
*Hoeflea*phototrophica*								# DOI:10.1007/978-1-4020-8815-5_3
*Stappia*marina*mano*								# DOI:10.1007/978-1-4020-8815-5_3
*Roseibium*denhamense*								# DOI:10.1007/978-1-4020-8815-5_3
*Roseibium*hameliense*								# DOI:10.1007/978-1-4020-8815-5_3
*Staleya*guttiformis*								# DOI:10.1007/978-1-4020-8815-5_3
*Thalassobacter*stenotrophicus*						# DOI:10.1007/978-1-4020-8815-5_3
*Roseovarius*tolerans*								# DOI:10.1007/978-1-4020-8815-5_3
*Roseovarius*mucosus*								# DOI:10.1007/978-1-4020-8815-5_3
*Roseinatronobacter*thiooxidans*					# DOI:10.1007/978-1-4020-8815-5_3
*Roseivivax*halodurans*								# DOI:10.1007/978-1-4020-8815-5_3
*Roseivivax*halotolerans*							# DOI:10.1007/978-1-4020-8815-5_3
*Dinoroseobacter*shibae*							# DOI:10.1007/978-1-4020-8815-5_3
*Roseibacterium*elongatum*							# DOI:10.1007/978-1-4020-8815-5_3
*Roseicyclus*mahoneyensis*							# DOI:10.1007/978-1-4020-8815-5_3
*Roseisalinus*antarcticus*							# DOI:10.1007/978-1-4020-8815-5_3
*Rubrimonas*cliftonensis*							# DOI:10.1007/978-1-4020-8815-5_3
*Sandariconobacter*sibiricus*						# DOI:10.1007/978-1-4020-8815-5_3
*Sandarakinorhabdus*limnophila*						# DOI:10.1007/978-1-4020-8815-5_3
*Erythromonas*ursincola*							# DOI:10.1007/978-1-4020-8815-5_3
*Blastomonas*natatoria*								# DOI:10.1007/978-1-4020-8815-5_3
*Citromicrobium*bathyomarinum*						# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*meromictius*						# DOI:10.1007/978-1-4020-8815-5_3
*Erythrobacter*longus*								# DOI:10.1007/978-1-4020-8815-5_3
*Erythrobacter*litoralis*							# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*dokdonensis*						# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*cryptus*							# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*tepidarius*							# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*donghaensis*						# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*neustonensis*						# DOI:10.1007/978-1-4020-8815-5_3
*Porphyrobacter*sanguineus*							# DOI:10.1007/978-1-4020-8815-5_3
*Erythromicrobium*ramosum*							# DOI:10.1007/978-1-4020-8815-5_3
*Roseateles*depolymerans*							# DOI:10.1007/978-1-4020-8815-5_3






photoheterotrophy			elements:C; main_element:C; electron_donor:C; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:aerobic_anoxygenic_phototrophy
*Rhodomicrobium*udaipurense*						# DOI:10.1099/ijs.0.046409-0
*Rhodobacter*changlensis*							# DOI:10.1099/ijs.0.65110-0
*Rhodobacteraceae*Cereibacter*						# DOI:10.1099/ijs.0.65110-0  and  DOI:10.1099/ijs.0.000016
*Rhodoferax*antarcticus*							# DOI:10.1007/s002030000140
*Rhizobiales*Rhodoplanes*							# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Rhodoplanes*						# DOI:10.1099/00207713-44-4-665  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhodoplanes*roseus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobium*orientis*								# DOI:10.1099/00207713-45-2-226  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Dinoroseobacter*shibae*							# DOI:10.1099/ijs.0.63511-0
*Chloracidobacterium*thermophilum*					# DOI:10.1099/ijs.0.000113
*Rhodovastum*atsumiense*							# DOI:10.2323/jgam.55.43
*Roseicyclus*mahoneyensis*							# DOI:10.1007/s11120-011-9718-1  and  DOI:10.1099/ijs.0.63195-0
*Ectothiorhodospira*salini*							# DOI:10.2323/jgam.56.313
*Rhodovulum*tesquicola*								# DOI:10.1099/ijs.0.035857-0
*Blastochloris*gulmargensis*						# DOI:10.1099/ijs.0.025965-0
*Phaeovibrio*sulfidiphilus*							# DOI:10.1099/ijs.0.018911-0
*Rhodovulum*adriaticum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacter*capsulatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Alphaproteobacteria*Rhodobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobiaceae*Rhodobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Rhodomicrobium*						# Duchow and Douglas (1949) - Rhodomicrobium vannielii, a new photoheterotrophic bacterium;   DOI:10.1099/ijs.0.046409-0
*Hyphomicrobiaceae*Rhodomicrobium*					# Duchow and Douglas (1949) - Rhodomicrobium vannielii, a new photoheterotrophic bacterium;   DOI:10.1099/ijs.0.046409-0 . Legacy taxonomy
*Rhizobiales*Blastochloris*							# DOI:10.1007/978-3-642-30197-1_257  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Blastochloris*					# DOI:10.1007/978-3-642-30197-1_257  and  Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Acetobacteraceae*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Rhodopila*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Roseococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Heliobacteriaceae*Heliobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Heliobacteriaceae*Heliorestis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Ectothiorhodospira*marina*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Ectothiorhodospira*marismortui*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Ectothiorhodospira*shaposhnikovii*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Ectothiorhodospira*vacuolata*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2B
*Proteobacteria*Rhodospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Phaeospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Phaeospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Rhodocista*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodocista*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Rhodospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodospira*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Rhodovibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Rhodovibrio*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Roseospira*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Roseospira*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Roseospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodospirillaceae*Roseospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Proteobacteria*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Paracraurococcus*Paracraurococcus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Acetobacteraceae*Rhodopila*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Acetobacteraceae*Roseococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodobacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodobaca*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodovulum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Alphaproteobacteria*Rhodothalassium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobacteraceae*Rhodothalassium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Sphingomonadaceae*Erythromonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhizobiales*Rhodoblastus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bradyrhizobiaceae*Rhodoblastus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhizobiales*Rhodopseudomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Bradyrhizobiaceae*Rhodopseudomonas*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rhizobiales*Blastochloris*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Hyphomicrobiaceae*Blastochloris*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Alphaproteobacteria*Rhodobium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodobiaceae*Rhodobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Gammaproteobacteria*Rhodoferax*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Comamonadaceae*Rhodoferax*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C. Legacy taxonomy
*Rubrivivax*gelatinosus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Rhodocyclaceae*Rhodocyclus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2C
*Erythrobacter*longus*								# Fukumori et al. (1987) - Cytochrome-aa3 from the aerobic photoheterotroph Erythrobacter longus - purification, and enzymatic and molecular-features
*Heliobacteriaceae*Heliobacterium*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Heliobacteriaceae*Heliorestis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Oscillochloris*trichoides*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1
*Sphingomonadaceae*Sandaracinobacter*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacter*sphaeroides*							# DOI:10.1146/annurev.micro.61.080706.093402
*Sphingomonadaceae*Erythromicrobium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sphingomonadaceae*Erythromonas*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sphingomonadaceae*Porphyrobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Craurococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Roseococcus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Sphingomonadaceae*Sandaracinobacter*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodovulum*marinum*								# DOI:10.1099/ijs.0.64005-0
*Rhodovulum*imhoffii*								# DOI:10.1099/ijs.0.64470-0
*Halorhodospira*halophila*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria
*Halorhodospira*abdelmalekii*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria
*Halorhodospira*halochloris*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria
*Halorhodospira*neutriphila*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria
*Ectothiorhodosinus*mongolicus*						# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria
*Thiorhodospira*sibirica*							# Rosenberg, DeLong, Lory, Stackebrandt, Thompson (2014) - The Prokaryotes - Gammaproteobacteria







phototrophy			elements:variable; main_element:variable; electron_donor:variable; electron_acceptor:C; aerobic:variable; exclusively_prokaryotic:no; light_dependent:yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:photoautotrophy
add_group:photoheterotrophy


plastic_degradation			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:yes; light_dependent:no
# phthalate isomers and esters, dimethyl phthalate, terephthalate, polyurethane
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Pseudomonas*chlororaphis*							# DOI:10.1016/S0964-8305(98)00057-2
*Tropicibacter*phthalicus*							# DOI:10.1007/s00284-012-0085-8
*Delftia*tsuruhatensis*								# DOI:10.1099/ijs.0.02285-0
*Burkholderia*cepacia*								# Chang et al (1998). Novel Organization of the Genes for Phthalate Degradation from Burkholderia cepacia DBO1
*Mycobacterium*vanbaalenii*							# DOI:10.1099/mic.0.27263-0
*Pseudomonas*acidovorans*							# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Pseudomonas*pseudoalcaligenes*						# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Pseudomonas*pseudoflava*							# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Pseudomonas*putida*								# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Pseudomonas*testosteroni*							# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Agrobacterium*radiobacter*							# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Alcaligenes*faecalis*								# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Micrococcus*TN01*									# Nomura et al (1989). A simple method for detection of enzyme activities involved in the initial step of phthalate degradation in microorganisms
*Burkholderia*gladioli*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*cepacia*								# Batie et al. (1987). Purification and character- ization of phthalate oxygenase and phthalate oxygenase reductase from Pseudomonas cepacia
*Bacillus*naphthovorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pelotomaculum*isophthalicicum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Pelotomaculum*terephthalicicum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Arthrobacter*keyseri*12B*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudomonas*P136*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Pelotomaculum*thermopropionicum*					# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Desulfotomaculum*thermobenzoicum*					# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Desulfotomaculum*nigrificans*						# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Desulfotomaculum*thermosapovorans*					# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Syntrophobacter*fumaroxidans*						# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Syntrophus*gentianae*								# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Desulfovibrio*vulgaris*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Methanospirillum*hungatei*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Methanosaeta*concilii*								# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Pseudomonas*aureofacians*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Pseudomonas*fluorescens*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Sphingomonas*paucimobilis*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Xanthomonas*maltophilia*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Rhodococcus*DK17*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Gordonia*MTCC*4818*								# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Sphingomonas*DK4*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Corynebacterium*O18*								# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Sphingomonas*yanoikuyae*DOS01*						# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Closterium*lunula*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Pasteurella*multocida*								# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Delftia*TBKNP-05*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Variovorax*paradoxus*								# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Comamonas*testosteroni*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Mycobacterium*vanbaalenii*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Burkholderia*cepacia*DBO1*							# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Micrococcus*12B*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
*Moraxella*VG45*									# Krishna and Phale (2008). Bacterial degradation of phthalate isomers and their esters
Methylobacterium*mesophilicum*						# DOI:10.1007/s00253-008-1548-5
*Sphingomonas*paucimobilis*							# DOI:10.1007/s00253-008-1548-5
*Sphingomonas*yanoikuyae*DOS01*						# DOI:10.1007/s00253-008-1548-5
*Sphingomonas*chungbukensis*						# DOI:10.1007/s00253-008-1548-5
*Comamonas*acidovorans*								# DOI:10.1007/s00253-008-1548-5
*Delftia*tsuruhatensis*								# DOI:10.1007/s00253-008-1548-5
*Viarovorax*paradoxus*								# DOI:10.1007/s00253-008-1548-5
*Shihouhao*Klebsiella*oxytoca*						# DOI:10.1007/s00253-008-1548-5
*Pasteurella*multocida*								# DOI:10.1007/s00253-008-1548-5
*Pseudomonas*aeruginosa*							# DOI:10.1007/s00253-008-1548-5
*Acinetobacter*lwoffii*								# DOI:10.1007/s00253-008-1548-5
*Corynebacterium*nitrilophius*						# DOI:10.1007/s00253-008-1548-5
*Aureobacterium*saperdae*							# DOI:10.1007/s00253-008-1548-5
*Gordonia*polyisoprenivorans*						# DOI:10.1007/s00253-008-1548-5
*Brevibacterium*iodinum*							# DOI:10.1007/s00253-008-1548-5
*Micrococcus*kristinae*								# DOI:10.1007/s00253-008-1548-5
*Rhodococcus*rubropertinctus*						# DOI:10.1007/s00253-008-1548-5
*Rhodococcus*rhodochrous*							# DOI:10.1007/s00253-008-1548-5
*Rhodococcus*ruber*									# DOI:10.1007/s00253-008-1548-5
*Rhodococcus*erytropolis*							# DOI:10.1007/s00253-008-1548-5
*Pseudomonas*pseodoalcaligenes*						# DOI:10.1007/s00253-008-1548-5



ureolysis			elements:N,C; main_element:N; electron_donor:none; electron_acceptor:none; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# (urease positive, urea hydrolysis, urea utilization for nitrogen or energy)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Nitrososphaera*viennensis*							# DOI:10.1073/pnas.1013488108
*Pseudorhodoferax*aquiterrae*						# DOI:10.1099/ijs.0.039842-0
*Amorphus*orientalis*								# DOI:10.1099/ijs.0.015735-0
*Bacillus*tusciae*									# DOI:10.1007/BF00408386
*Kyrpidia*tusciae*									# DOI:10.1007/BF00408386  and  DOI:10.4056/sigs.2144922
*Aurantimonas*coralicida*							# DOI:10.1099/ijs.0.02359-0
*Arthrobacter*alkaliphilus*							# DOI:10.1099/ijs.0.65301-0
*Pelagibaca*bermudensis*							# DOI:10.1099/ijs.0.64063-0
*Flavobacterium*limicola*							# DOI:10.1099/ijs.0.02369-0
*Shewanella*loihica*								# DOI:10.1099/ijs.0.64354-0
*Hydrogenophaga*flava*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Marinobacter*aquaeolei*							# DOI:10.1099/00207713-49-2-367
*Dyella*thiooxydans*								# DOI:10.1099/ijs.0.022012-0
*Arenimonas*maotaiensis*							# DOI:10.1099/ijs.0.067769-0
*Phycicoccus*soli*									# DOI:10.1099/ijs.0.000265
*Pyrinomonas*methylaliphatogenes*					# DOI:10.1099/ijs.0.055079-0
*Pontibaca*methylaminivorans*						# DOI:10.1099/ijs.0.020172-0
*Flavobacterium*ahnfeltiae*							# DOI:10.​1007/​s00203-014-1010-2
*Zobellella*taiwanensis*							# DOI:10.1099/ijs.0.64121-0
*Sediminimonas*qiaohouensis*						# DOI:10.1099/ijs.0.006965-0
*Pannonibacter*phragmitetus*						# DOI:10.1099/ijs.0.02356-0
*Oceanicola*litoreus*								# DOI:10.1007/s10482-012-9867-z
*Hwanghaeicola*aestuarii*							# DOI:10.1099/ijs.0.021048-0
*Huaishuia*halophila*								# DOI:10.1099/ijs.0.025536-0
*Thioclava*dalianensis*								# DOI:10.1099/ijs.0.046094-0
*Celeribacter*neptunius*							# DOI:10.1099/ijs.0.014159-0
*Amorphus*suaedae*									# DOI:10.1099/ijs.0.048959-0
*Bizionia*myxarmorum*								# DOI:10.1099/ijs.0.63527-0
*Bizionia*algoritergicola*							# DOI:10.1099/ijs.0.63527-0
*Gillisia*hiemivivida*								# DOI:10.1099/ijs.0.63527-0
*Marinobacterium*mangrovicola*						# DOI:10.1099/ijs.0.067462-0
*Humitalea*rosea*									# DOI:10.1099/ijs.0.043018-0
*Aurantimonas*ureilytica*							# DOI:10.1099/ijs.0.65035-0
*Algisphaera*agarilytica*							# DOI:10.1007/s10482-013-0076-1
*Ferruginibacter*alkalilentus*						# DOI:10.1099/ijs.0.009480-0
*Ferruginibacter*lapsinanis*						# DOI:10.1099/ijs.0.009480-0
*Gracilibacillus*ureilyticus*						# DOI:10.1099/ijs.0.016808-0
*Nautilia*lithotrophica*							# DOI:10.1099/00207713-52-4-1299
*Chromatium*okenii*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Allochromatium*warmingii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lamprobacter*modestohalophilus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosococcus*oceani*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thermochromatium*tepidum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiocystis*violacea*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Arhodomonas*aquaeolei*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Lysobacter*gummosus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Schineria*larvae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Xanthomonadaceae*Thermomonas*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiothrix*eikelboomii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiothrix*fructosivorans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiothrix*unzii*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Beggiatoa*alba*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Hydrogenovibrio*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Piscirickettsiaceae*Hydrogenovibrio*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Methylobacter*luteus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Chromohalobacter*salexigens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*orientalis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonas*halophila*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Psychrobacter*proteolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonadaceae*Azotobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Rhizobacter*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonadaceae*Rhizobacter*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Gammaproteobacteria*Rugamonas*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pseudomonadaceae*Rugamonas*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Colwellia*psychrerythraea*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Colwellia*psychrotropica*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Colwellia*rossensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Brenneria*alni*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriales*Budvicia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Budvicia*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Enterobacteriales*Morganella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Enterobacteriaceae*Morganella*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Proteus*vulgaris*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteus*mirabilis*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteus*myxofaciens*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteus*penneri*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Providencia*rettgeri*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pasteurella*dagmatis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Actinobacillus*scotiae*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 2
*Azospirillaceae*Azospirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodospirillaceae*Azospirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
Roseospira*mediosalina*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Skermanella*parooensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidiphilium*multivorum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acidiphilium*organovorum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Paracraurococcus*ruber*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodopila*globiformis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Acetobacteraceae*Roseomonas*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Zavarzinia*compransoris*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhodobacter*blasticus*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Roseivivax*halotolerans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rubrimonas*cliftonensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobium*galegae*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiaceae*Carbophilus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Aminobacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Phyllobacteriaceae*Aminobacter*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Mesorhizobium*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Phyllobacteriaceae*Mesorhizobium*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Albibacter*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylocystaceae*Albibacter*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Methylopila*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylocystaceae*Methylopila*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Afipia*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Afipia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Oligotropha*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bradyrhizobiaceae*Oligotropha*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodopseudomonas*cryptolactis*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobium*aestuarii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobium*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Devosia*riboflavina*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Filomicrobium*fusiforme*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Rhizobiales*Methylorhabdus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Methylorhabdus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Starkeya*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hyphomicrobiaceae*Starkeya*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhizobiales*Methylobacterium*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylobacteriaceae*Methylobacterium*				# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Rhodobium*marinum*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderia*caribensis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderia*glathei*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderia*graminis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Burkholderia*multivorans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Pandoraea*apista*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ralstonia*pickettii*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Proteobacteria*Duganella*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Oxalobacteraceae*Duganella*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Proteobacteria*Herbaspirillum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Oxalobacteraceae*Herbaspirillum*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Herbaspirillum*seropedicae*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Gammaproteobacteria*Massilia*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Oxalobacteraceae*Massilia*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2. Legacy taxonomy
*Bordetella*bronchiseptica*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bordetella*parapertussis*v							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ralstonia*paucula*									# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bordetella*bronchiseptica*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Oligella*ureolytica*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Ornithobacterium*rhinotracheale*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hydrogenophaga*flava*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Macromonas*bipunctata*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Polaromonas*vacuolata*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquabacteriuma*citratiphilum*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquabacteriuma*parvum*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiomonas*perometabolis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Hydrogenophilus*thermoluteolus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Thiobacillus*delicatus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylophilaceae*Methylophilus*					# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylobacillus*glycogenes*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylobacillus*flagellatus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Methylophilaceae*Methylovorus*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquaspirillum*denitrificans*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquaspirillum*voronezhense*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bacteroides*ureolyticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosomonas*aestuarii*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosomonas*marina*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosomonas*nitrosa*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosomonas*ureae*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Nitrosomonas*cryotolerans*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Aquaspirillum*voronezhense*						# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Arcobacter*nitrofigilis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*aurati*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*bilis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*felis*								# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*hepaticus*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*muridarum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*nemestrinae*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*salomonis*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Helicobacter*trogontum*							# Garrity, Brenner, Krieg and Staley (2005) Bergey's Manual of Systematic Bacteriology, vol. 2
*Bacillus*algicola*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*equorum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*equorum*linens*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*gallinarum*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*intermedius*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*lutrae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*piscifermentans*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*schleiferi*coagulans*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*simulans*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*pseudintermedius*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*fastidiosus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*funiculus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*halophilus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*jeotgali*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*lentus*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*psychrosaccharolyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*schlegelii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Bacillus*tusciae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Geobacillus*thermoglucosidasius*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Gracilibacillus*halotolerans**						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Marinococcus*albus*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Virgibacillus*marismortui*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*antarcticus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Paenibacillus*favisporus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*ginsengisoli*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Brevibacillus*thermoruber*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Filibacter*limicola*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcina*globispora*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcina*pasteurii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcina*psychrophilac*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*ureae*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*aquimarina*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*globispora*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*koreensis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*pasteurii*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*psychrophila*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*saromensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Sporosarcin*soli*									# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*aureus*aureus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*capitis*urealyticus*				# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*cohnii*urealyticus*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*delphini*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*epidermidis*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*hominis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*hominis*novobiosepticus*			# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*nepalensis*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*pasteuri*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*saprophyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*succinus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*warneri*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*xylosus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Staphylococcus*simiae*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Salinicoccus*alkaliphilus*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Streptococcus*alactolyticus*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*celatum*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*colicanis*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*kluyveri*								# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Flavobacterium*johnsoniae*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sphingobacterium*siyangense*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sphingobacterium*thalpophilum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Verrucomicrobiaceae*Verrucomicrobium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Arenibacter*latericius*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bizionia*algoritergicola*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bizionia*myxarmorum*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Bizionia*saleffrena*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cellulophaga*fucicola*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chryseobacterium*piscium*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chryseobacterium*scophthalmum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Costertonia*aggregata*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Croceibacter*atlanticus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Elizabethkingia*miricola*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flaviramulus*basaltis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Gillisia*hiemivivida*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Gillisia*mitskevichiae*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Salegentibacter*flavus*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Wautersiella*falsenii*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Blattabacteriaceae*Blattabacterium*				# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cryomorpha*ignava*									# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sphingobacterium*antarcticum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sphingobacterium*kitahiroshimense*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Sphingobacterium*multivorum*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*pinensis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*ginsengisegetis*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Chitinophaga*ginsengisoli*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Flectobacillus*major*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Ancyclobacter*rudongensis*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagales*Emticicia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Cytophagaceae*Emticicia*							# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Sporocytophaga*myxococcoides*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Mycoplasmataceae*ureaplasma*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Coraliomargarita*akajimensis*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Pelagicoccus*mobilis*								# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetes*Singulisphaera*						# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4
*Planctomycetaceae*Singulisphaera*					# Garrity, Brenner, Krieg and Staley (2011) Bergey's Manual of Systematic Bacteriology, vol. 4. Legacy taxonomy
*Corynebacterium*kutscheri*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pilosum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*pseudodiphtheriticum*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*stationis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ulcerans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*vitaeruminis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*mysorens*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*niigatensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brevibacterium*marinum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Cellulomonas*iranensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Cellulomonas*persica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5	
*Tetrasphaera*jenkinsii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*beijiangensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Bifidobacterium*longum*suis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ammoniagenes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*appendicis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*callunae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*caspium*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*cystitidis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*falsenii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*lipophiloflavum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*renale*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*riegelii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*singulare*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*sputi*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*sundsvallense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*terpenotabidum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*thomssenii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*ureicelerivorans*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Corynebacterium*urealyticum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*cercidiphylli*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*maris*										# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*cinnamea*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*natronolimnaea*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dietzia*papillomatosis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*obuense*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*fortuitum*fortuitum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*fortuitum*acetamidolyticum*			# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*rhodesiae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*senegalense*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*alvei*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*porcinum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*neworleansense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*neoaurum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*brisbanense*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*diernhoferi*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*mucogenicum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*chelonae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*abscessus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*hassiacum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*madagascariense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycobacterium*hodleri*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*bronchialis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*aichiensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*alkanivorans*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*amarae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*desulfuricans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*lacunae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*malaquae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*namibiensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*paraffinivorans*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*polyisoprenivorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*rubripertincta*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*shandongensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*sinesedis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*soli*										# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*sputi*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*terrae*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Gordonia*westfalica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*baikonurensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*erythropolis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*fascians*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*globerulus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*imtechensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*koreensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*kyotonensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*maanshanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*opacus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*percolatus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*qingshengii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*wratislaviensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*coprophilus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*pyridinivorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*rhodnii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*rhodochrous*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*ruber*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Rhodococcus*zopfii*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiaceae*Skermania*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Williamsia*deligens*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Williamsia*faeni*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Williamsia*serinedens*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Segniliparus*rotundus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Segniliparus*rugosus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tsukamurella*paurometabola*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tsukamurella*inchonensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tsukamurella*pulmonis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Tsukamurella*strandjordii*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryptosporangium*arvum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cryptosorangium*minutisporangium*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Fodinicola*feengrottensis**						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Modestobacter*versicolor*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Jiangella*gansuensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineosporia*mikuniensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineosporia*rhizophila*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineosporia*rhamnosa*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineosporia*succinea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kineococcus*aurantiacus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*crystallopoietes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*alpinus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*stackebrandtii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*gandavensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*castelli*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sinomonas*atrocyanea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sinomonas*flava*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sinomonas*albidus*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*woluwensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*ilicis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*kerguelensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Arthrobacter*sulfureus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Citricoccus*muralis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*marina*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*palustris*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kocuria*varians*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nesterenkonia*halotolerans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nesterenkonia*xinjiangensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Yaniella*halotolerans*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brevibacterium*paucivorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brevibacterium*picturae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Oerskovia*enterophila*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Oerskovia*paurometabola*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*alimentarium*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*conglomeratum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*fresconis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*paraconglomeratum*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*rhamnosum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Brachybacterium*zhongshanense*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermacoccus*barathri*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermacoccus*profundi*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Dermatophilus*congolensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Terrabacter*terrae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Terracoccus*luteus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*ginsengiterrae*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*liquefaciens*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*luteolum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*paludicola*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*terrae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacterium*trichothecenolyticum*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microbacteriaceae*Humibacter*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leifsonia*pindariensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leucobacter*aridicollis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leucobacter*chromiireducens*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Leucobacter*luti*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microcella*putealis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microcella*alkaliphila*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycetocola*saprophilus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycetocola*reblochoni*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Mycetocola*tolaasinivorans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Phycicola*gilvus*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Cellulosimicrobium*funkei*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Myceligenerans*crystallogenes*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Catenuloplanes*japonicus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Catenuloplanes*crispus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Polymorphospora*rubra*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Friedmanniella*antarctica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Propioniferax*innocua*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinopolymorpha*cephalotaxi*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Pseudonocardia*nitrificans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Amycolatopsis*lactamdurans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Crossiella*cryophila*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Goodfellowiella*coeruleoviolacea*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Kibdelosporangium*aridum*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lechevalieria*fradiae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lentzea*californiensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lentzea*kentuckyensis*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lentzea*violacea*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Lentzea*waywayandensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Prauserella*rugosa*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Prauserella*halophila*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*hirsuta*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*antimicrobia*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*flava*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*halophila*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*jiangxiensis*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*phatthalungensis*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*rectivirgula*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*rosea*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*shandongensis*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*spinosa*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*spinosporotrichia*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharopolyspora*tripterygii*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Saccharothrix*longispora*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*capillispiralis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*cinereus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*durmitorensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*ferralitis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*flaveus*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*fumigatiscleroticus*					# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*hainanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*humiferus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*paradoxus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*phaeoluteichromatogenes*				# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*pharetrae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Streptomyces*purpureus*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microtetraspora*niveoalba*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Microtetraspora*fusca*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*angiospora*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*pusilla*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*africana*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*dietziae*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*fastidosa*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*ferruginea*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nonomuraea*helvata*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Planomonospora*alba*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Planomonospora*sphaerica*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sphaerisporangium*album*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Sphaerisporangium*flaviroseum*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*ganjiahuensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*halophila*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*kunsanensis*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*synnemataformans*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*trehalosi*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*tropica*								# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Nocardiopsis*xinjiangensis*						# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinocorallia*cavernae*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Actinomadura*viridilutea*							# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Euzebya*tangerina*									# Garrity, Brenner, Krieg and Staley (2012) Bergey's Manual of Systematic Bacteriology, vol. 5
*Oscillochloris*trichoides*							# Garrity, Brenner, Krieg and Staley (2001) Bergey's Manual of Systematic Bacteriology, vol. 1




reductive_acetogenesis			elements:C; main_element:C; electron_donor:variable; electron_acceptor:C; aerobic:no; exclusively_prokaryotic:yes; light_dependent:no
# (acetate generation via CO2 or CO respiration)
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*Veillonellaceae*Sporomusa*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Eubacteriaceae*Acetobacterium*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacterales*Moorella*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Thermoanaerobacteriaceae*Moorella*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3. Legacy taxonomy
*Clostridium*ljungdahlii*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Tindallia*							# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Natronincola*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Halobacteroidaceae*Natroniella*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiaceae*Anoxynatronum*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridiales*Anaerovirgula*						# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Clostridium*scatologenes*							# DOI:10.1099/00207713-50-2-537
*Lachnospiraceae*Acetitomaculum*					# Garrity, Brenner, Krieg and Staley (2009) Bergey's Manual of Systematic Bacteriology, vol. 3
*Syntrophococcus*sucromutans*						# Doré and Bryant (1990) - Metabolism of One-Carbon Compounds by the Ruminal Acetogen Syntrophococcus sucromutans
*Holophaga*foetida*									# DOI:10.1007/BF00264378
*Eubacterium*aggregans*								# DOI:10.1006/anae.1998.0179
*Clostridium*carboxidivorans*						# DOI:10.1099/ijs.0.63482-0
*Clostridium*drakei*								# DOI:10.1099/ijs.0.63482-0
*Clostridium*thermoaceticum*						# Lundie and Drake (1984) - Development of a minimally defined medium for the acetogen Clostridium thermoaceticum
*Clostridium*glycolicum*							# DOI:10.1128/AEM.67.10.4734-4741.2001
*Clostridium*ragsdalei*								# DOI:10.1007/s10295-010-0794-6
*Peptostreptococcus*productus*						# Misoph and Drake (1996) - Effect of CO2 on the fermentation capacities of the acetogen Peptostreptococcus productus U-1
*Alkalibaculum*bacchi*								# DOI:10.1099/ijs.0.018507-0
*Clostridium*MT351*									# Tyurin et al (2012) - Electrofusion of cells of Acetogen Clostridium sp. MT 351 with erm(B) or cat in the chromosome
*Acetitomaculum*ruminis*							# DOI:10.1111/j.1574-6968.1995.tb07880.x
*Acetogenium*kivui*									# Yang et al (1989) - Nickel transport by the thermophilic acetogen Acetogenium kivui
*Clostridium*autoethanogenum*						# DOI:10.1128/genomeA.00628-13
*Clostridium*formicoaceticum*						# DOI:10.1007/s002030050663
*Acetitomaculum*ruminis*							# 10.1002/9780470015902.a0020086.pub2
*Acetoanaerobium*noterae*							# 10.1002/9780470015902.a0020086.pub2
*Acetobacterium*woodii*								# 10.1002/9780470015902.a0020086.pub2
*Acetohalobium*arabaticum*							# 10.1002/9780470015902.a0020086.pub2
*Acetonema*longum*									# 10.1002/9780470015902.a0020086.pub2
*Marvinbryantia*formatexigens*						# 10.1002/9780470015902.a0020086.pub2
*Butyribacterium*methylotrophicum*					# 10.1002/9780470015902.a0020086.pub2
*Caloramator*fervidus*								# 10.1002/9780470015902.a0020086.pub2
*Clostridium*aceticum*								# 10.1002/9780470015902.a0020086.pub2
*Eubacterium*limosum*								# 10.1002/9780470015902.a0020086.pub2
*Fuchsiella*alkaliacetigena*						# 10.1002/9780470015902.a0020086.pub2
*Holophaga*foetida*									# 10.1002/9780470015902.a0020086.pub2
*Moorella*thermoacetica*							# 10.1002/9780470015902.a0020086.pub2
*Natroniella*acetigena*								# 10.1002/9780470015902.a0020086.pub2
*Natronincola*histidinovorans*						# 10.1002/9780470015902.a0020086.pub2
*Oxobacter*pfennigii*								# 10.1002/9780470015902.a0020086.pub2
*Blautia*productus*									# 10.1002/9780470015902.a0020086.pub2
*Sporomusa*ovata*									# 10.1002/9780470015902.a0020086.pub2
*Syntrophococcus*sucromutans*						# 10.1002/9780470015902.a0020086.pub2
*Tindallia*californiensis*							# 10.1002/9780470015902.a0020086.pub2
*Thermoacetogenium*phaeum*							# 10.1002/9780470015902.a0020086.pub2
*Thermoanaerobacter*kivui*							# 10.1002/9780470015902.a0020086.pub2
*Treponema*primitia*								# 10.1002/9780470015902.a0020086.pub2



chemoheterotrophy			elements:C; main_element:C; electron_donor:C; electron_acceptor:variable; aerobic:variable; exclusively_prokaryotic:no; light_dependent:no
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
add_group:aerobic_chemoheterotrophy
add_group:fermentation
add_group:cellulolysis
add_group:xylanolysis
add_group:chitinolysis
add_group:ligninolysis
add_group:methylotrophy
add_group:acetoclastic_methanogenesis
add_group:methanogenesis_by_disproportionation_of_methyl_groups
add_group:methanogenesis_using_formate
add_group:oil_bioremediation
add_group:aromatic_compound_degradation
add_group:hydrocarbon_degradation
*Halobacteriales*Haloferax*							# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Halobacteriaceae*Haloferax*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea. Legacy taxonomy
*Thermoplasmataceae*Thermoplasma*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Picrophilaceae*Picrophilus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Thermococci*Thermococcales*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Thermococcaceae*Pyrococcus*						# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Archaeoglobaceae*Archaeoglobus*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Thermoplasmata*Thermoplasmatales*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea
*Thermoplasmataceae*Thermoplasma*					# Bergey's Manual of Systematics of Archaea and Bacteria (2015). Domain: Archaea


