beaceccde6238b9b9618e1ee4806fb29 *DESCRIPTION
9b2302450a6051cdded57b1d9ea85836 *NAMESPACE
d70287282e1c2b5beb06f3b7f63da807 *NEWS.md
d12dbb4ba3890cc82f501aa53e09dc2b *R/RcppExports.R
90b3b77a6fcfa0ecabbc314848d19645 *R/align_lineage.R
4432b7e9f28296212b31f921498ba355 *R/annotation.R
0006520aa0cc4f0720917b7d93f37012 *R/clonality.R
f5527cd087507082c59385b6be557a7f *R/clustering.R
5a6403680a01a390607d8f0cfa76e371 *R/data_docs.R
879f84ab1cbe14518906d9e5c1fafa66 *R/dimensions.R
f4dd8b431382b2546326fc63e5e9994a *R/distance.R
03cc8b3ab7734d5a2ae145f5ff0278b6 *R/diversity.R
c19d02069b53db58e26a8e372014812e *R/dynamics.R
68854b8d4401b25f89d2169e593a39c7 *R/explore.R
9ce7150a56886a8216a4ac72435956ab *R/filters.R
6796c3998de55164de5dd8ad52c7d5e3 *R/gene_usage.R
dd62e748e14b23742a65e2a5d4bfe64d *R/gene_usage_analysis.R
f42abb58aaa7e1c66fa7c936f7b021fe *R/germline.R
cb42a9cce4e1b1de806b6c82d1d4d0ba *R/immunarch-package.R
7df1033b59fffb9c48d448146462e9f5 *R/immunarch-remaster.R
121c0cb1045f31f61a27a1cd3350e65b *R/immunr_data_format.R
b89f9e2dbbb6174dd5b36aa69891d742 *R/info_theory.R
5e18dec6a833c7864d549d36eaa239e1 *R/io-parsers.R
554e64de8fcfaf410a65e1fa42bc35ec *R/io-savers.R
0e0e7efcee45d0df64d5de542213a632 *R/io-utility.R
865708017572351457d898b906b80cc3 *R/io.R
1929b638e60eb865348b92dfa26a66b5 *R/kmers.R
e9c23d1d8e3780b0c6636ef21f52212f *R/overlap.R
e13ef47c914b3ca35ee34cf5b367e970 *R/overlap_analysis.R
6daba8736c90427f1aaa979c43ced3f9 *R/phylip.R
f4c3ccc0637fbe68c3a961a2ba2fa886 *R/preprocessing.R
30152e7550bc10a54a75a7e0032dba3e *R/public.R
f4dbe555822ef0ec9300808bea2633a8 *R/sampling.R
bafb536a7181acd2682ae8540e19baf6 *R/seqCluster.R
30227343b8d5842bdd93d68fe8df3952 *R/shiny.R
f5654b2cddac953ce4cdaab96ab57a67 *R/singlecell.R
ff480970e167dab57847f84f43b95ad4 *R/somatic_hypermutation.R
14cddce2216afcc59758a4f958a003e2 *R/spectratyping.R
9232c06e83a7b6aaa6ba3dc347917e3a *R/tools.R
fe899b49e221bf66b1f9a96a4c7c6f3e *R/vis.R
df45cb83b07beb9cdb5a6b0ece864ba3 *README.md
6a277b1072a858d0827f7933c1d69393 *build/vignette.rds
00ae2aa3427adcc0d025a35ad5621d53 *data/aaproperties.rda
400a5198c3d7ced9c5208e60c335d72d *data/bcrdata.rda
ea5a2af608ae4caefa4bc532eda78d5c *data/genesegments.rda
9e42c72b10475df4177277725f4dab44 *data/immdata.rda
48f0443d189db0ba3d023b30f31dc417 *data/scdata.rda
2f9c822143a81a4144425b82cf553671 *inst/doc/v1_introduction.Rmd
5a1d5688fb51ebcf6cc75d1750b307ad *inst/doc/v1_introduction.html
fe9099ac9eed9842643da108a87dff33 *inst/doc/v2_data.R
b0db12f05f331c04d430bd3703078538 *inst/doc/v2_data.Rmd
fc99536ddc6735e0992361acaaa9e611 *inst/doc/v2_data.html
332170ff9e10e7ccb5be6aeffc63d44c *inst/extdata/db/vdjdb.example.txt
c08390039a6e33fedd08342ba1b68071 *inst/extdata/io/Sample1.tsv.gz
b2a32ed785986eeb3094e86f22a40310 *inst/extdata/io/Sample2.tsv.gz
25f02ee5566a800604a1ef0a278461bd *inst/extdata/io/Sample3.tsv.gz
d4ae13e57fcf4c4b101a8cc8bbe8175d *inst/extdata/io/Sample4.tsv.gz
290577e5d5766171e1bfb7096bbcede8 *inst/extdata/io/metadata.txt
9e45583b294271871d1bd262d5629d44 *inst/extdata/sc/flu.csv.gz
53b91ddbe26edac8addd409f5dbb9320 *man/aa_properties.Rd
f597218a9d9fc0fd6faf26fecab3ed5e *man/aa_table.Rd
924ef9d8fe15384b27667215c0af6411 *man/add_class.Rd
14f09d34cca5323535c2a25d4fcd6228 *man/apply_symm.Rd
4fa4c75b6e162ba7aaf03a6ab0a19675 *man/bcrdata.Rd
247ded577d1f83e0c7b3f7ef1624af9b *man/bunch_translate.Rd
2c4a4f079963b08604277951969d027d *man/check_distribution.Rd
ec1e96a7782444db62a8c42da3e6f8be *man/coding.Rd
2309ef2f82cc963571c55eacd3d98d03 *man/dbAnnotate.Rd
1f9d661a68b379946459249b34ed8447 *man/dbLoad.Rd
4575c5d24b842f2968a781f768ceeaba *man/dot-quant_column_choice.Rd
2fbc3e36c063e50fe33f3f5bf688ad91 *man/entropy.Rd
f5c3c1328575d7c9f1f7060f6270896a *man/fixVis.Rd
ff179d6fd1e0a8a3d0de2eb0dfdff6e3 *man/geneUsage.Rd
fffb92f8ce5be1bd1603de67a5891960 *man/geneUsageAnalysis.Rd
45157ce56d78957bd391a0a6058633e8 *man/gene_segments.Rd
f6eda2d1282b817e5176f754e15fc87e *man/gene_stats.Rd
842242b89b57c34db4445b92f89c144a *man/getKmers.Rd
86e96f0b1e3ac0220e00a1fd30cb5b7f *man/group_from_metadata.Rd
7e06128ecde5283a387f57242774fbab *man/has_class.Rd
0bacf1f2e2480bd24675f94af83073ee *man/immdata.Rd
77d33eba1525f55078039a15b6e5b320 *man/immunr_data_format.Rd
20fe71e4ff99a287f603da2a1e1a30c3 *man/immunr_hclust.Rd
b9f90f14607da3f3470b98d7abd4307a *man/immunr_pca.Rd
8f7c73f4046e4a1007603d07d0df1622 *man/inc_overlap.Rd
fe2739054688d2d28746d14ef8a1ac01 *man/matrixdiagcopy.Rd
23b5e592e1326ca90057c74cd020f60d *man/pubRep.Rd
39dc82fd97db7322e8cfebf4a2577170 *man/pubRepApply.Rd
c3e5adb3c16aa7ded4a2a09f3554bcdb *man/pubRepFilter.Rd
1299a7fe2857c8729e0ddd418ef25485 *man/pubRepStatistics.Rd
9ec63aa7bdd84f549ebf556c5669e3ca *man/public_matrix.Rd
b9bbdda97ebf0fc3db548f5a3730ad07 *man/repAlignLineage.Rd
9f53cd901d956d0eecf7c344334615db *man/repClonalFamily.Rd
1e8a7a4fd57dc12076232baa3988e336 *man/repClonality.Rd
8d2ffe04194e46ac78395c4930619bbf *man/repDiversity.Rd
e905c8d848256e411ab2f9b44d6539e9 *man/repExplore.Rd
bf2a00847988a8ea180be597c9bc6a92 *man/repFilter.Rd
6a406b751253f12019f70ca064a20179 *man/repGermline.Rd
fd8bdf8695f5cc7844670a9691941796 *man/repLoad.Rd
d3ef7bf6e94b1fb7608d767cce17766a *man/repOverlap.Rd
16047e62db31eab46cd89170bc78a1e9 *man/repOverlapAnalysis.Rd
94ebff0393a03db77d84871381026ffe *man/repSample.Rd
da893473450fd2661099b20f0b199e52 *man/repSave.Rd
8c473c1eea9854891a4030dbc1c356ca *man/repSomaticHypermutation.Rd
6a40a253b58f643a5ea5dc80650b76de *man/scdata.Rd
f462d7c3a3f47d4e0ddb314380c3afb4 *man/select_barcodes.Rd
728d8cde75a601a84e7aa85e862874ca *man/select_clusters.Rd
37506c9d38ff7e0cd0119228303d573e *man/seqCluster.Rd
f689e071f6773220cf11933ffb280c5f *man/seqDist.Rd
12c1a574d119c90c76e1138fe85e2afb *man/set_pb.Rd
e8ed942278353fe14dc2d8f26519ec6f *man/spectratype.Rd
839e7ca2a924e203063fb5d9d103ae49 *man/split_to_kmers.Rd
0c83d34e2f24a04339acc715c27389f6 *man/switch_type.Rd
87f0f4872d80df4b71570250463cdc3c *man/top.Rd
6adf1399e1770ffbf1b890126f761447 *man/trackClonotypes.Rd
8213876a755605470b621459c3fe8bb0 *man/vis.Rd
b8e949b2cc86a8771402fc207d25f70d *man/vis.clonal_family.Rd
e2f643048e85274b7198533f7ab00476 *man/vis.clonal_family_tree.Rd
4e2fa36013bab8c255c7e3fe76208da1 *man/vis.immunr_chao1.Rd
dde8871b1a9518aa0f06f1389c11a5f7 *man/vis.immunr_clonal_prop.Rd
912f613aab8ed5bccb32a12fd4f7fe14 *man/vis.immunr_dynamics.Rd
a665bcceee85ab3a00922a1d9fc5f22b *man/vis.immunr_exp_vol.Rd
7b2e9aa1c9521570d9c242e15972fbd4 *man/vis.immunr_gene_usage.Rd
63a25860050e649a6b48406f8165e94b *man/vis.immunr_hclust.Rd
73c25761223a38ab72858bcb1b13732f *man/vis.immunr_inc_overlap.Rd
6d0764463f713de6d9a3c8f0ea7c101c *man/vis.immunr_kmeans.Rd
8e46717089fb78bf6239b1e7539ada3b *man/vis.immunr_kmer_table.Rd
4cc5526a5cb543bdc8b676ab98370245 *man/vis.immunr_mds.Rd
61c843a7a1d4097a6a13a55e7a9ca6b7 *man/vis.immunr_ov_matrix.Rd
114250f1b05587ac5a0f1431283ca728 *man/vis.immunr_public_repertoire.Rd
39f37e977cf5c2c3b93ef382aab1808e *man/vis.immunr_public_statistics.Rd
733b64b27e4224455e6707182128d215 *man/vis.step_failure_ignored.Rd
d92659c027dd37bde851804e907aba9b *man/vis_bar.Rd
37cb141bbe686e29283a98734a2d99ec *man/vis_box.Rd
1a1d65b28d60e2f8c23bf320a6dbb8b2 *man/vis_circos.Rd
42ba90806948d5541442e762c2aebe2d *man/vis_heatmap.Rd
f62e755043afd1953d14f39576b2116c *man/vis_heatmap2.Rd
5a3c19b48f1b6a06a02241e3bc5eb8da *man/vis_hist.Rd
f02b92a6502c4f7ace2b64e62247c606 *man/vis_immunr_kmer_profile_main.Rd
56585d15ae08c637aef49b2502f387bb *man/vis_public_clonotypes.Rd
5e29f8e01adce70da51f22a7a93fcdc7 *man/vis_public_frequencies.Rd
88a66c8d825ba4617d1053e672ad639c *man/vis_textlogo.Rd
69ea319e04809ad4052cd8ec680c0868 *src/RcppExports.cpp
d6fe6d2e88a8bda3a957fe8efaddc9cf *src/fill_functions.cpp
2f9c822143a81a4144425b82cf553671 *vignettes/v1_introduction.Rmd
b0db12f05f331c04d430bd3703078538 *vignettes/v2_data.Rmd
7605157f8927ad942b124ff1bca50f16 *vignettes/web_only/BCRpipeline.Rmd
41c30e144f66318aaccd937ba44e9ad0 *vignettes/web_only/clustering.Rmd
f5e2ade1a7dc6dcce958d011780fc8ce *vignettes/web_only/community.Rmd
02ee8b9d8309ef34defa98fe15128945 *vignettes/web_only/load_10x.Rmd
8fca640aa39c217377594e8fd5fed1dc *vignettes/web_only/load_mixcr.Rmd
8720416bc464e1e9fbd0d857644749f2 *vignettes/web_only/repFilter_v3.Rmd
408d22f509277d4577e6a7be6250a129 *vignettes/web_only/v10_prop.Rmd
447235dd49a2fca86879e0ea923dce01 *vignettes/web_only/v11_db.Rmd
11c0a972196576ea69d9c30b2a7eeac7 *vignettes/web_only/v21_singlecell.Rmd
bb7adef931060909ff400537b010d3c7 *vignettes/web_only/v3_basic_analysis.Rmd
a5c0620bdbb3ae71ae3f1f5470ad9588 *vignettes/web_only/v4_overlap.Rmd
4e3fcdbe732e40d88cfca27d9ac9f39a *vignettes/web_only/v5_gene_usage.Rmd
791270834d0a14950f398f5bf3d77a80 *vignettes/web_only/v6_diversity.Rmd
ee1baf5b0e8498d44e10f0086a03ca9d *vignettes/web_only/v7_fixvis.Rmd
42cb79cc513ef5d6d6972480fc1fbf53 *vignettes/web_only/v8_tracking.Rmd
406df3bc5e842e48ada9ac9c071ecce3 *vignettes/web_only/v9_kmers.Rmd
