f708e66db165aa2f9dc3666b0b5cbd96 *DESCRIPTION
3e965a83b5b1ca88f8510fed58f99d30 *NAMESPACE
68d45b8dbbbb18d8ae6ec46d32d6807d *R/FindGenerations.R
a27a1c8cb115d183e191c3e095f8d50f *R/GenerateValues.R
db5f6af3375a7265e377dc480293b96d *R/GetModelWeight.R
178fd5a4914a28e31a53c3eee5378898 *R/bisse2hisse.R
9f3698f07af33e2d7609963d95e9a1b5 *R/fgeohisse.R
71da49eb36b67a0f03a5793d048ee384 *R/fhisse.R
e2b13e13de738507853d693419888213 *R/geohisse.R
47023d07a983ac5239ea18c2dbfedbb4 *R/geohisseLikelihood.R
8f7e38f15714b4ea49a82ad008ff6d8e *R/getModelAveEqFreqs.R
e0825f06c2c7b7cc3bd8a8c3dc00a4e1 *R/getModelAveTipRates.R
f21bdaa5c85d0b2b7f0fa2ffdb8e7b50 *R/hisse.R
b1297b9974e2618056a67942f17ed496 *R/hisseLikelihood.R
f4c2ccc31728bb43d46dece61b0c7317 *R/hisseNull4.R
6218325d7c3e66464af08a111715183d *R/marginRecon.R
22fd5bdcfcc2c28ba51fe81500723bd3 *R/misse.R
b68271a8ada23da5ccb1a2bf797db1cf *R/muhisse.R
9d0ade06d212784f28967b221130f42d *R/plotContMapHiSSE.R
eaad04fff6577f0fbf7549feb48dc408 *R/plotHisse.R
480f9335d6e4841ac331cce88676d7f8 *R/simulateGeoHiSSE.R
ce09d25f125f2fbfae2792973eefe0a0 *R/simulateHisse.R
bb937b5fbb324bef131477676cce3689 *R/singleModels.R
8d4e71a135fc9c433c961ac7d6ed6645 *R/summarizeHisse.R
a1c3c9253ad8705a0543d20e913ff13f *R/supportRegion.R
9e22db3fb54e5ba4c997450552174a26 *R/supportRegionGeoSSE.R
c5e6285e8c4fd3c8ae02c6ccd89096d4 *R/supportRegionMiSSE.R
aba7cbaf505aab2f383940245716d133 *R/supportRegionMuHiSSE.R
7ea968794501f9d4027c5b3a62f06e60 *R/supportRegionfHiSSE.R
b4429827c0a94daa3832de3bc4fd8696 *R/transMat.R
a747a12503cebb49648ce5b574f1e208 *R/transMatGeoHiSSE.R
ef21fe6c60198d54b46df814bce9d48c *R/transMatMuHiSSE.R
876521eeaf2bd5b00d3817b1a0839bba *R/transMatfGeoHiSSE.R
91042ac94a7c1f2d0eae2313315fb637 *R/transMatfHiSSE.R
cd02b5ac0b7cdb9f03f623fb2ae53723 *build/vignette.rds
52ec439138e7f511821bcdc563ff3425 *inst/CITATION
7ed4e69010a64089a2e12dd72b905554 *inst/doc/Clade-specific-sampling.R
d18af873e8b3c94710d8cab9a86ea712 *inst/doc/Clade-specific-sampling.Rmd
2270ba1fd27b4225b207c6c76d8b65df *inst/doc/Clade-specific-sampling.pdf
f54f0d6995f2303e9dd99bce566c809d *inst/doc/GeoHiSSE-vignette.R
6236abc97762fa495f04ff8621019fc0 *inst/doc/GeoHiSSE-vignette.Rmd
63a392a8a3b549823d0f477269aedc91 *inst/doc/GeoHiSSE-vignette.pdf
ea6976ba60b723db98ca9d4014018134 *inst/doc/MiSSE-vignette.R
53354b668924123346263978d87099ed *inst/doc/MiSSE-vignette.Rmd
330afa52ccd35f04ce816fc0644fc914 *inst/doc/MiSSE-vignette.pdf
b6f758fff85159b63fd428608eecab08 *inst/doc/MuHiSSE-vignette.R
d15314b384ed1d91b1029dffc741908c *inst/doc/MuHiSSE-vignette.Rmd
542eea89b6cab0ac1c74f8ca6b31beae *inst/doc/MuHiSSE-vignette.pdf
8cc9e067bead8e4ab05168e99d7038a5 *inst/doc/hisse-fisse-type1-vignette.R
9631e8d61de42196cb7c4a17bb49b9ca *inst/doc/hisse-fisse-type1-vignette.Rmd
b793ddf68dfd56f1d77ae42803a776bb *inst/doc/hisse-fisse-type1-vignette.pdf
a7202427591bf5da95357c307d790666 *inst/doc/hisse-vignette.R
d5c42041a689d27790007ea16e949720 *inst/doc/hisse-vignette.Rmd
cb19c3c55a852db7401d6b989589475d *inst/doc/hisse-vignette.pdf
667f6f0be2899c051973ead336a69f36 *inst/extdata/conifers_reconlist.rda
c0d5cf987ae06a5972f6873833734535 *man/GeoHiSSE.Rd
fa3b09c860e3749edd21cc80bd8650c0 *man/GetAICWeights.Rd
3f903a9ddb9ba71c9a5c0b6df76dbf6b *man/MiSSE.Rd
a731acd4282b974eb803e29b17c256d6 *man/MiSSEGreedy.Rd
f6e8683dd577bba0959d2d6a6b6163c7 *man/MuHiSSE.Rd
467695abc3ad55eb5f65c2ed5d926db4 *man/SimulateGeoHiSSE.Rd
6d227fbb20ed60b04c9fc3f83466961d *man/TranslateParsMakerGeoHiSSE.Rd
a1273b3d14da7f16e248d72a979f3775 *man/bisse2hisse.Rd
44c5cc67aacb0cf6757b1beb2c17e3aa *man/fGeoHiSSE.Rd
7a27b0aa7aa356a4068e2cfa2bb25506 *man/generateMiSSEGreedyCombinations.Rd
7ad202f1033f3463c2e552c1610530ef *man/hisse.Rd
d5f11cc8e4c0ed81b198c2126be5f991 *man/hisse.new.Rd
d33c70de1dde0cb0023e71e470bb92c4 *man/hisseNull4.Rd
e2f1a88978e800fcb591ecffcd460375 *man/makeGeoHiSSELikelihood.Rd
356d300a4d7f6b3eb721c0823393a017 *man/makeHiSSELikelihood.Rd
e496aa71a823bd34dfab54b2d51a10c8 *man/marginRecon.Rd
32ac5c962342ff1094ba14bb37ffae1b *man/marginReconGeoSSE.Rd
0027f53fda50f2aaddb7630c39e78d91 *man/marginReconMiSSE.Rd
71643d769d54e74a6dc4d79fea371ee0 *man/marginReconMuHiSSE.Rd
d47daf39f5c9d8b68017c52d912c08a4 *man/marginReconfGeoSSE.Rd
262028346dd3f6abbea1d5226573e4b9 *man/marginReconfHiSSE.Rd
57e239e77d37ab6921a842879e8caaca *man/modelAveEqFreqs.Rd
c345be6cb0bd3dd7ba34d3720a35841a *man/modelAveRates.Rd
7c52a4a5eb1f065fd1f1a920c0cbd13b *man/plotGeoHiSSE.Rd
27f86143e7ea1b814177986f1cbd4db3 *man/plotHisse.Rd
5446b20614fbdada2f87d73017de7713 *man/plotMiSSE.Rd
3ec31a53aa31b85c294de4d60354cadb *man/plotMuHiSSE.Rd
5cf4176b447ccf23db9e00df63aacf7a *man/simToPhylo.Rd
e9bf0197060c6ade64e41b6bbefef702 *man/simulateHisse.Rd
e43f25bfbd259a63c90dc584da1ef35f *man/supportRegion.Rd
950d04b1ef9d5ff371229cffa4e0059b *man/supportRegionGeoSSE.Rd
a3583d62dc2e6e5223a844927b9612e6 *man/supportRegionMiSSE.Rd
e4e5df2e3b6e32b59da043cbe6270b52 *man/supportRegionMuHiSSE.Rd
23d9106dbd16e4c8bc33a4e70e376a06 *man/supportRegionfHiSSE.Rd
5e695e3f26cb1dd7f700a2a44206da2f *man/transMat.Rd
32143b9a2be32213949e0c2e8d770423 *man/transMatMakerGeoHiSSE.Rd
60be66579556090a61d517327daadfd8 *man/transMatMakerMuHiSSE.Rd
be1f52f5eec65bff84849c349a2c2d3e *man/transMatMakerfHiSSE.Rd
a10296016f2685db54fb28ced404a642 *src/Makevars
ad5bb70b04de9bc6b1839a57968e9771 *src/bisse-ext-derivs.c
f7885bc944389187f9234b2d17c284f6 *src/canonical-musse-ext-derivs.c
9363e041611f14dd534369d377a41d59 *src/canonical_geosse-ext-derivs.c
295d82422f92407487b090f018bac987 *src/fbisse-ext-derivs.c
9952215020784b392f5035c3602bf86d *src/fcanonical_geosse-ext-derivs.c
911dcda1f2765b536dd5d662129e6fa9 *src/fgeohisse-ext-derivs.c
cc04cb662bd9e42216d0d12d19d5f386 *src/fhisse-ext-derivs.c
1c26b4d39466d84eec3d47c6987e9281 *src/fnotclasse-ext-derivs.c
199dc70a894b7dc0244da12b637cb994 *src/fnotclasse-more-ext-derivs.c
9cddd52690a27a5fc28a3f413abec7bb *src/geohisse-ext-derivs.c
67ca36f548bd236265dcf4a7fd2db323 *src/hisse-ext-derivs.c
504e6bc1337de6f84cb58d6f8a569100 *src/hissenull-ext-derivs.c
3b69d7879a290ac42eff72a2fd03e119 *src/misse-ext-derivs.c
f5e553a8d7ad098e1939f3915891714d *src/muhisse-ext-derivs.c
a4e47232a92c6533072e74d695698709 *src/notclasse-ext-derivs.c
d0a6a58cd725d3e7d266cce9e903da6a *src/notclasse-more-ext-derivs.c
91483b538717fd3f5c6b9caa3cdacda1 *src/registerDynamicSymbol.c
c63bfdef238700166a40686e07021eeb *tests/testthat.R
9d54126b3cb502e03c5325c93cc096cf *tests/testthat/test_likelihood.R
2ed00739e87e4765e4194aba3840fe29 *tests/testthat/test_simulator.R
d0e26c588cc3367cb83bc1662408ddd9 *tests/testthat/whales_Steemanetal2009.tre
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36e575b7a4e90d65dc8c66918610adf4 *vignettes/cladeSamplingVariables.Rsave
c8cb037d045dc9a65e200cc0e8f61981 *vignettes/geohisse_recons_vignette.Rsave
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53f4ae8171ff252f5e91bd1f2a857a11 *vignettes/misse.vignette.Rsave
3c410bfae8bcdb399d7d620b900f04ef *vignettes/setCAQTipRatios.Rsave
fa6125b3b2aacc4a3fb817ad1dc11851 *vignettes/setKXHTipRatios.Rsave
88e8c85e9e7fd3a2e8354f900f527532 *vignettes/setMEVTipRatios.Rsave
f9201e5951c54ff06c528b91c8dc0506 *vignettes/testrecon1.Rsave
683c3791c94e5961175b960fcd87bf19 *vignettes/testrecon2.Rsave
bfb7211c657474305cdabf8680943047 *vignettes/testrecon3.Rsave
d0e26c588cc3367cb83bc1662408ddd9 *vignettes/whales_Steemanetal2009.tre
