185f6a5bc8cc60a6864a891f38ebff1b *DESCRIPTION
91fc89b8556fb5f3d8e3f2f80d278d04 *NAMESPACE
68d45b8dbbbb18d8ae6ec46d32d6807d *R/FindGenerations.R
a27a1c8cb115d183e191c3e095f8d50f *R/GenerateValues.R
831d2920f9a224e1a3bc746a1e814a1a *R/GetModelWeight.R
178fd5a4914a28e31a53c3eee5378898 *R/bisse2hisse.R
f8d1ab330b1fed1f641024b6f3333b6f *R/fgeohisse.R
9b2ca55a3b0a8e3bc4633d039aacfbc2 *R/geohisse.R
8f7e38f15714b4ea49a82ad008ff6d8e *R/getModelAveEqFreqs.R
dc06aec733cb92be560cf48b0e09fd77 *R/getModelAveTipRates.R
660bd1eb344bb2a184a9dfbd81e835c3 *R/hisse.R
a6399661b18b2f9352d8baf3c0e8c2e8 *R/hisseLikelihood.R
d1f3d24880738fa8c1c5c629407b92b6 *R/hisseNull4.R
1198f3817edf6f3e81209c6698f11c36 *R/marginRecon.R
b17f3e082ecb3cc5a759144368981e6d *R/muhisse.R
9d0ade06d212784f28967b221130f42d *R/plotContMapHiSSE.R
ebcb9e398bdd4f17cffb14a96fe3da37 *R/plotHisse.R
480f9335d6e4841ac331cce88676d7f8 *R/simulateGeoHiSSE.R
ce09d25f125f2fbfae2792973eefe0a0 *R/simulateHisse.R
bb937b5fbb324bef131477676cce3689 *R/singleModels.R
8d4e71a135fc9c433c961ac7d6ed6645 *R/summarizeHisse.R
4a6339015dfb5e60b2d24255d2f526d7 *R/supportRegion.R
9e22db3fb54e5ba4c997450552174a26 *R/supportRegionGeoSSE.R
aba7cbaf505aab2f383940245716d133 *R/supportRegionMuHiSSE.R
b4429827c0a94daa3832de3bc4fd8696 *R/transMat.R
a747a12503cebb49648ce5b574f1e208 *R/transMatGeoHiSSE.R
dac262bf79a47fdde5fa371ff34b2314 *R/transMatMuHiSSE.R
876521eeaf2bd5b00d3817b1a0839bba *R/transMatfGeoHiSSE.R
3bf79bbe9f4ed21f3c099cad400a9ac7 *build/vignette.rds
52ec439138e7f511821bcdc563ff3425 *inst/CITATION
db2a1b132154b9f252e6efd8d5cdfaf8 *inst/doc/GeoHiSSE-vignette.R
a7e140d6ae5469b672ac840c4f5985ef *inst/doc/GeoHiSSE-vignette.Rmd
1d0924db22066d9658c848abc0ed721d *inst/doc/GeoHiSSE-vignette.pdf
736ac45d9599b4cd44123e5cce31a410 *inst/doc/MuHiSSE-vignette.R
b5a68fe6014b5b729cfc623fc6869136 *inst/doc/MuHiSSE-vignette.Rmd
103faf644abff534797d1ffffa8f79ba *inst/doc/MuHiSSE-vignette.pdf
8cc9e067bead8e4ab05168e99d7038a5 *inst/doc/hisse-fisse-type1-vignette.R
9631e8d61de42196cb7c4a17bb49b9ca *inst/doc/hisse-fisse-type1-vignette.Rmd
c14dfc7a2eeb706e3c7debff696dae4e *inst/doc/hisse-fisse-type1-vignette.pdf
c7309cac4ec210aa97636d97e74e95bf *inst/doc/hisse-vignette.R
d40fa49bf1b2ca68507ab1d19457197e *inst/doc/hisse-vignette.Rmd
78cd1190f275b29e628df6c9e68d8951 *inst/doc/hisse-vignette.pdf
667f6f0be2899c051973ead336a69f36 *inst/extdata/conifers_reconlist.rda
46122a5f3ce12b711f60f26f7062bf33 *man/GeoHiSSE.Rd
42fe9f3ea659d26320dafa485789d875 *man/GetModelWeight.Rd
2e4db0e67d75176735769ef7cc04a4fc *man/MuHiSSE.Rd
e5ebfc24d385fe911cda11fb1cad1b7b *man/SimulateGeoHiSSE.Rd
847408e4bf81eb4300faec21a5e99a9a *man/TranslateParsMakerGeoHiSSE.Rd
a1273b3d14da7f16e248d72a979f3775 *man/bisse2hisse.Rd
ae8ba8536e17deafe800203546bb4311 *man/fGeoHiSSE.Rd
e91e7d05dd53221c8ba7f7c015d33be1 *man/hisse.Rd
d33c70de1dde0cb0023e71e470bb92c4 *man/hisseNull4.Rd
880131b17184ee35e2f07942b13f3899 *man/makeHiSSELikelihood.Rd
e496aa71a823bd34dfab54b2d51a10c8 *man/marginRecon.Rd
32ac5c962342ff1094ba14bb37ffae1b *man/marginReconGeoSSE.Rd
bbec38cced1130a5ccae4f3b5e483fca *man/marginReconMuHiSSE.Rd
5ad743e0496883ad024312c20f82684c *man/marginReconfGeoSSE.Rd
a447b790ffa79e13ff356b13ab5adb6c *man/modelAveEqFreqs.Rd
c345be6cb0bd3dd7ba34d3720a35841a *man/modelAveRates.Rd
7c52a4a5eb1f065fd1f1a920c0cbd13b *man/plotGeoHiSSE.Rd
27f86143e7ea1b814177986f1cbd4db3 *man/plotHisse.Rd
28079fc4a147bc6d34f59babedc228ef *man/plotMuHiSSE.Rd
5cf4176b447ccf23db9e00df63aacf7a *man/simToPhylo.Rd
e9bf0197060c6ade64e41b6bbefef702 *man/simulateHisse.Rd
05cd1ade651913801be34fbb8d88caf0 *man/supportRegion.Rd
37e8178e752684f9a21d322bee54ae8e *man/supportRegionGeoSSE.Rd
2f416054abb4cc160919102f042dc903 *man/supportRegionMuHiSSE.Rd
5e695e3f26cb1dd7f700a2a44206da2f *man/transMat.Rd
32143b9a2be32213949e0c2e8d770423 *man/transMatMakerGeoHiSSE.Rd
7a7c52b3734858f89985defeb134d7e3 *man/transMatMakerMuHiSSE.Rd
e74f70e5a5a544a5518297a145f20b86 *src/Makevars.in
40dbfbe4f363b802ba1106408cecbad0 *src/Makevars.win
ad5bb70b04de9bc6b1839a57968e9771 *src/bisse-ext-derivs.c
f7885bc944389187f9234b2d17c284f6 *src/canonical-musse-ext-derivs.c
9363e041611f14dd534369d377a41d59 *src/canonical_geosse-ext-derivs.c
9952215020784b392f5035c3602bf86d *src/fcanonical_geosse-ext-derivs.c
911dcda1f2765b536dd5d662129e6fa9 *src/fgeohisse-ext-derivs.c
1c26b4d39466d84eec3d47c6987e9281 *src/fnotclasse-ext-derivs.c
199dc70a894b7dc0244da12b637cb994 *src/fnotclasse-more-ext-derivs.c
9cddd52690a27a5fc28a3f413abec7bb *src/geohisse-ext-derivs.c
67ca36f548bd236265dcf4a7fd2db323 *src/hisse-ext-derivs.c
504e6bc1337de6f84cb58d6f8a569100 *src/hissenull-ext-derivs.c
f5e553a8d7ad098e1939f3915891714d *src/muhisse-ext-derivs.c
a4e47232a92c6533072e74d695698709 *src/notclasse-ext-derivs.c
d0a6a58cd725d3e7d266cce9e903da6a *src/notclasse-more-ext-derivs.c
dedb385e36a0d4b172109b2dbd51f9de *src/registerDynamicSymbol.c
c63bfdef238700166a40686e07021eeb *tests/testthat.R
8594e1478c6514aca960866b4e549f13 *tests/testthat/test_likelihood.R
2ed00739e87e4765e4194aba3840fe29 *tests/testthat/test_simulator.R
a7e140d6ae5469b672ac840c4f5985ef *vignettes/GeoHiSSE-vignette.Rmd
07bcd00cd61224b9a32cf42469955197 *vignettes/GeoHiSSE-vignette.html
c1a57e15934ed303719c017617d53d81 *vignettes/May2017_CID4_added_setsummaries.csv
b5a68fe6014b5b729cfc623fc6869136 *vignettes/MuHiSSE-vignette.Rmd
d77ffd99d43f13e7307e1387ee7c0239 *vignettes/MuHiSSE-vignette.html
c8cb037d045dc9a65e200cc0e8f61981 *vignettes/geohisse_recons_vignette.Rsave
59790e43e3d5e122ea37793de31ac324 *vignettes/geohisse_vignette.Rsave
9631e8d61de42196cb7c4a17bb49b9ca *vignettes/hisse-fisse-type1-vignette.Rmd
2d5bcd9b309e949ccecc4ff00fbd67b7 *vignettes/hisse-fisse-type1-vignette.html
d40fa49bf1b2ca68507ab1d19457197e *vignettes/hisse-vignette.Rmd
c7f3c11fb6eb9720df9b665a9053c98f *vignettes/hisse-vignette.html
3c410bfae8bcdb399d7d620b900f04ef *vignettes/setCAQTipRatios.Rsave
fa6125b3b2aacc4a3fb817ad1dc11851 *vignettes/setKXHTipRatios.Rsave
88e8c85e9e7fd3a2e8354f900f527532 *vignettes/setMEVTipRatios.Rsave
f9201e5951c54ff06c528b91c8dc0506 *vignettes/testrecon1.Rsave
683c3791c94e5961175b960fcd87bf19 *vignettes/testrecon2.Rsave
bfb7211c657474305cdabf8680943047 *vignettes/testrecon3.Rsave
