f101c95169a80ef5a3526dcdded1c827 *DESCRIPTION
915b253de4e19df2da245c2156643adc *NAMESPACE
0d048d493175b0571ff7619bfc522c79 *R/Betadist.R
5e39fe0ed959f64ef92ff849c53accc9 *R/R6Model.R
2e775903054dabe038d3bdd77fa8ef0e *R/R6covariance.R
bf05376bbbfaf75a7360bfa89008d44a *R/R6meanfunction.R
ea05d409448f2edf60931ddbf21cecec *R/RcppExports.R
df2e3908782cfa85ec0449c9dde91373 *R/extrafunctions.R
94e8c931b5c5aaff79646a1d1afc209c *R/lme4_functions.R
b8c5ef948149f02c5f7cf8cc3a66b6d9 *R/model_s3_functions.R
5e389abde8df9ddbd031e9ebd1606ec7 *R/nelder.R
bd4287bd989d8e3511a0035abd87b3a5 *R/printfunctions.R
23c0fc36c295d531ef891befb05f1a2a *R/quantiledist.R
f54667170dd61fbceea864ddde8a6871 *R/stanmodels.R
76d8ff12e1e6b2e515961ea707f6b2a5 *README.md
1f722566a1c5e40ebff3333e9c7bb197 *build/partial.rdb
7e297a31e37e77c201a2bacff2f979eb *configure
845efca43973cdde1a6174faf1d88e99 *configure.win
207f0bfae6393e3a185e8c61ae7526b2 *data/Salamanders.rda
0d6638fede562bd7ebf61e34253199b3 *data/SimGeospat.rda
d0b0353a56cd257720885281d7dd96c1 *data/SimTrial.rda
58614da8a498d17367a09083ff35eac3 *inst/cmdstan/mcml.stan
35f68058d728f51d68adc82491013b4c *inst/include/glmmr.h
fd3e43ad99bdb3ae110a1d59bb7e0d9c *inst/include/glmmr/algo.h
6942bcdee9f0a5a4cfdb8826698eb7d0 *inst/include/glmmr/calculator.hpp
76d25162683e9f9db91c289cb7f2fea7 *inst/include/glmmr/covariance.hpp
133a19d7ffb41085705c7b63c473b615 *inst/include/glmmr/family.hpp
ddbf937235b7b6342cd9c86b8e12517c *inst/include/glmmr/formula.hpp
64556bc75618c18fc1dc0cae5c036e95 *inst/include/glmmr/formulaparse.h
b4df5fc58e188415b160882242391753 *inst/include/glmmr/general.h
1e0b3bfac886c70b6701d00d091c81e4 *inst/include/glmmr/griddata.hpp
9b7ca81ceb6aa7b087acd3662a05c920 *inst/include/glmmr/hsgpcovariance.hpp
48d92a0d941f88638cb5b1011bbfd801 *inst/include/glmmr/instructions.h
4fc3eebcde225c1cdfb0e951df27cb16 *inst/include/glmmr/interpreter.h
9f16341d65828d78815e5e24d294e1da *inst/include/glmmr/linearpredictor.hpp
a703ffb4c5e4d0790f6ab419e93a76b3 *inst/include/glmmr/maths.h
0c2ea751785ae43e713f1039ff0d8a83 *inst/include/glmmr/matrixfield.h
5bdbad745b468dfcf4b132360b6e6d1b *inst/include/glmmr/matrixw.hpp
1956f5b5f6be47d163b8553cdd3cbedc *inst/include/glmmr/model.hpp
a01cca3ed5dd2d90207dff82e27f0bc8 *inst/include/glmmr/modelbits.hpp
2419fbdab2c76249aae80e362dbb3733 *inst/include/glmmr/modelextradata.hpp
f40477c6529d8e42032a8f9eadaf084d *inst/include/glmmr/modelmatrix.hpp
4c502fb30162abea3b4ffa9c5b6fa1f5 *inst/include/glmmr/modelmcmc.hpp
4561e5377a8612dc5e4a928cbdc14e9b *inst/include/glmmr/modeloptim.hpp
1d8931c02264d7bf5cc25202ee82f255 *inst/include/glmmr/nngpcovariance.hpp
9feb22830ca93fb5df92d6b68c76be51 *inst/include/glmmr/openmpheader.h
c8a37ebeb4443b6316dbe0a08d689875 *inst/include/glmmr/optim/bobyqa_algo.h
7f2cba9529cd0f24a012ee77a7fb1e88 *inst/include/glmmr/optim/bobyqa_general.h
66c2b300acd9d2bcf28ab66f0cd82e95 *inst/include/glmmr/optim/lbfgs.h
654a285e3fa48bf30968542e13f88266 *inst/include/glmmr/optim/lbfgs/BFGSMat.h
c7e3d7c0ae3cf539560902a0bba47fe9 *inst/include/glmmr/optim/lbfgs/BKLDLT.h
7bc542ebae65f198cc31696e1ee112ed *inst/include/glmmr/optim/lbfgs/Cauchy.h
b998f47218cea0cfa5b600c8affa6081 *inst/include/glmmr/optim/lbfgs/LineSearchBacktracking.h
5e11d707754dc06054349246d4965c21 *inst/include/glmmr/optim/lbfgs/LineSearchBracketing.h
a03b27fae4bfb3bdc6c108283f9fa7ab *inst/include/glmmr/optim/lbfgs/LineSearchMoreThuente.h
35488847d79a40d60d040d9ef6cead29 *inst/include/glmmr/optim/lbfgs/LineSearchNocedalWright.h
8ddfa3f7ae3b359baf13554cbed665fd *inst/include/glmmr/optim/lbfgs/Param.h
b34ff8806dfc88aaae0c37d9a181772b *inst/include/glmmr/optim/lbfgs/SubspaceMin.h
b2ecc735b4188907406b6afdb79c4661 *inst/include/glmmr/optim/lbfgsb.h
026bd5552ed5ef84ee91462b22be98b5 *inst/include/glmmr/optim/newuoa.h
0860c81c1c183e2914f47a2fadf10a01 *inst/include/glmmr/optim/newuoa_impl.h
da53c9e8a5ee5813e9197da61f4a184a *inst/include/glmmr/optim/optim.h
3f8af65ef08d491294140101c7a87455 *inst/include/glmmr/randomeffects.hpp
e083ad81e7dbec61fa2591dcbc506b4f *inst/include/glmmr/sparse.h
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
2ac02033af196352a7b7d7a8681a74d6 *inst/stan/include/license.stan
58614da8a498d17367a09083ff35eac3 *inst/stan/mcml.stan
d55fb4caabaf6a8b27d276c6156ec462 *man/Beta.Rd
12db242328b2b1ba15e8f580b1ad4d32 *man/Covariance.Rd
ec59cfee00e92e306928768b647acb05 *man/MeanFunction.Rd
c8af82d2113dffe89593ac3d67b93fe3 *man/Model.Rd
abf2a8263c0f63f4c2c99b26907338a7 *man/Quantile.Rd
34b2c7aad3328804ad8dacab0141e56c *man/Salamanders.Rd
f253d04a6e1b049778b184ffbdf00e42 *man/SimGeospat.Rd
8e582226b2353de4cf1d1256b9fe89a1 *man/SimTrial.Rd
7908ffc04180a555d288198d93c1f2b8 *man/coef.Model.Rd
82e398be4902a1ce410025f7abea7819 *man/coef.mcml.Rd
e75093241bacd64beb5db924c9017374 *man/confint.mcml.Rd
f1484366d67230f928b25ec32316f332 *man/cross_df.Rd
eaaebc7d1b25327b100227d81bf40562 *man/cycles.Rd
7f18fa1dbb315c4d103cf500b36d3334 *man/family.Model.Rd
a83fc5ad32e2c0301cf0fe3faa7cc201 *man/family.mcml.Rd
cec273784e1539be4f44718e3046d053 *man/fitted.Model.Rd
7e688d6919eb0de639ea0b5d7181c1d3 *man/fitted.mcml.Rd
f5a3bdafb36ab8b59240fb8b3e766e52 *man/fixed.effects.Rd
ec94768f88d38ed4c411343b3391ce96 *man/formula.Model.Rd
856794030df477c79b688fb76a3e3f5b *man/formula.mcml.Rd
319a928a62e0512375f595536b8660fb *man/glmmrBase-package.Rd
95e2c09c7b4e905d5dcbe389a6d3fa57 *man/hessian_from_formula.Rd
2c2dfd31f22e50dcd0420f18d17bbb66 *man/lme4_to_glmmr.Rd
6568dda20857efe7968eb9edef3290d7 *man/logLik.Model.Rd
eee06b654a68e9322b1b165f868bff35 *man/logLik.mcml.Rd
6faba21bb214f21048655975a3e3f561 *man/match_rows.Rd
b7640c22c9e2e49185248c9c953ab3b5 *man/mcml_glmer.Rd
27a1047de2890ed950d6451943ee5327 *man/mcml_lmer.Rd
ddc38be4ca68bd6cf18c2988f4916805 *man/mcnr_family.Rd
a778e627b8f69d614ae3fea10a933c68 *man/nelder.Rd
fa4335692e3032c30fd114dcbbae2ee6 *man/nest_df.Rd
653b96d2e7d606fafdf29dd0ec851521 *man/predict.Model.Rd
e58a3c551233836e6acb4e6bba84c5b1 *man/predict.mcml.Rd
007887a487e468ed4795b88b812c3cb4 *man/print.mcml.Rd
12ce82bc289ce88556f3d1f6fe64f5fe *man/progress_bar.Rd
60124794c4276ab0767153235bf6efb9 *man/random.effects.Rd
708c7818214182f558894bad44d1a127 *man/residuals.Model.Rd
1d625e31b09f5acf308a9bf74b63d98f *man/residuals.mcml.Rd
eadfb8c68018ba3c7520093a93952b8a *man/setParallel.Rd
c47b99f406b676305cee28d7fd50ac19 *man/summary.Model.Rd
6c7821cb72efde8f071ee7479a9e12f8 *man/summary.mcml.Rd
1e0f21b6d1d7422b9b6e02718cca3453 *man/vcov.Model.Rd
ba1d18551f6bdb7bda70711bc01d38b9 *man/vcov.mcml.Rd
f8a460bdd44bc05a033b9fd8e5301265 *src/Makevars
f64c672f3b373b7c7d4757cfa7d06c5c *src/Makevars.win
f589f98c6ba604d2624b62e40c114a28 *src/RcppExports.cpp
6bd09c179393fcb50e399315ca4e1337 *src/model_module.cpp
6eb4d80871d0bbf1369074979df9e186 *src/stanExports_mcml.cc
957e2993a9d52928785e97fe7ff19b96 *src/stanExports_mcml.h
