87bb05c754679d18545542ed5d030d0f *DESCRIPTION
1f562ce976100bc5de5dd98a9a511607 *NAMESPACE
b280855a92a97b3a9dbb54180e5e6c9a *R/DEfuns.R
90a02384bec1dbc4f6d1028600535d47 *R/DEpanel.R
a9fe941ad29612b47dd00efc30f63361 *R/DEplotFuns.R
7a10ad25d161a1643521f72c140bcf87 *R/DEplotPanel.R
7d7530875aea966f92b61ed4beb215a9 *R/DEsummaryFuns.R
b284a6ac93216902485788d1e4cebade *R/DEsummaryPanel.R
2f7f3f6992e2babeef123489a19328f9 *R/GRNCisPanel.R
18bfb9bd1cab03cd5fe65e9a236a2751 *R/GRNCustomPanel.R
010be3f797049d3386cf01a85e7c89f6 *R/GRNTransPanel.R
ef8b7127628382649fba47c3454ed480 *R/GRNfuns.R
0a8f48835cafe8ea67e4aa4fe6f5028a *R/GRNpanel.R
c23ff2fc56e88faf569ea414c4e559ce *R/QCpanel.R
d778ca8890148a5c3f2ffbbcd294aaaf *R/QCplotFuns.R
75dfd74c4a9a01e2d9a0f304e44a386c *R/crossPanel.R
a9d287cc5e6affd608ae565fc9b3e1d3 *R/cross_plot.R
8a6bbbd36fcf9769ba9e3bf032ec04aa *R/enrichmentPanel.R
2cf3844495ed9a54fcdb765f63b3b87f *R/generateShinyApp.R
a7b774f4f6af8b2787eeab7707147f8d *R/landingPanel.R
c8c3e46c237e10e7ef54c4dde57eeca3 *R/modalityPanel.R
3d10e526f035060f86fb813d1303449b *R/patternFuns.R
839b16e48725388473b6a398132d382e *R/patternPanel.R
5bae6c9f2a498d2a0d7ba67e9ebc4bbd *R/preprocessExpressionMatrix.R
58a26d9ec688a90beeb4d563570292f2 *R/preprocess_miRTarBase.R
b6c28d8d0f2473f177102d0e2e4dc71f *R/sampleSelectPanel.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
6511aaa6aad00f158dc89cb30ad31881 *README.md
c1c9070a336b45ac44c22edb06395ddc *build/vignette.rds
d0b8d18b4657d33b38d0515f733cda89 *inst/doc/GEO_App.R
b9e104836e4dff2f6f4ada99db6471d2 *inst/doc/GEO_App.Rmd
bc5062b9434a0ad33118af683036ca8d *inst/doc/GEO_App.html
b4efb9c47acec73b947e1dfc3e79ed9e *inst/doc/IntegratingMultiomics.R
1486f7663da3baf6286403f55ef0c3de *inst/doc/IntegratingMultiomics.Rmd
b914cc1b3b93717a33f339b5baec5699 *inst/doc/IntegratingMultiomics.html
ac8426cb134d26f74e2746007f80b6a5 *inst/doc/bulkAnalyseR.R
4286ee06ee2dc057776bff67de438fd0 *inst/doc/bulkAnalyseR.Rmd
1b8aa7a67e1c2e9e1b8d8f2e8ddadb7a *inst/doc/bulkAnalyseR.html
a0d054e0f22ae993d02bc51af74db220 *inst/extdata/expression_matrix.csv
2e0b269f7e833b771c000ae50bc7e74f *inst/extdata/expression_matrix_preprocessed.csv
a9e8e644a537dd5539ebda0c9bd9428e *inst/extdata/mmu_MTI_sub.xls
5ba875abedbf585fe2ef3c254a4f14c0 *man/DEanalysis.Rd
b4b645cf7cdf8ab01f5438af8c0e4d33 *man/DEpanel.Rd
36aab589a8542231534fae28f54aec2b *man/DEplotPanel.Rd
62acce6faf06cee3286bc03e690a5cd0 *man/DEsummaryPanel.Rd
a3e297b39482054bd21ecf0b6256b947 *man/GRNCisPanel.Rd
aa4493d93b3758dcb84796da6c5eee16 *man/GRNCustomPanel.Rd
6fa6e7a31117235363c7f36b929e564f *man/GRNTransPanel.Rd
d544dd33997e070ba1c781d634af5869 *man/GRNpanel.Rd
cd103d12bd30757b48f2b10ec6299ba4 *man/QCpanel.Rd
234e189780b8a38a61fb9c1f163ffc50 *man/calculate_condition_mean_sd_per_gene.Rd
0e280bb8a551b8f7304a24e2b1c42cbb *man/crossPanel.Rd
1a952e1640c14b0c4ec03beadd70f253 *man/cross_plot.Rd
6a56239d44cb403c9c3cbc9284b4329c *man/determine_uds.Rd
6a1d8276018daed745476caad653538c *man/enrichmentPanel.Rd
1294a9e36e70794679eece683d27cc43 *man/expression_heatmap.Rd
e236681f22e96dc292b29742251b75e3 *man/find_regulators_with_recurring_edges.Rd
8cb00feb4824e40ece734be63d6207c5 *man/generateShinyApp.Rd
59fcb7004d0f7cb8492e1fce9c08bc6b *man/genes_barplot.Rd
c1bfe385b8c497ed9d408ce363be4ff6 *man/get_link_list_rename.Rd
f06043047209359d3910204ebc082c6f *man/infer_GRN.Rd
04a73e3aee07027ddcdaf86910e88e5a *man/jaccard_heatmap.Rd
54a255f09fa251a37e201cb4c6c17091 *man/jaccard_index.Rd
e7a4dbc4c0c647e2db764e9a19847719 *man/landingPanel.Rd
ed4a02493c7d2591ed27f6ea8baa09ca *man/ma_plot.Rd
43cd3575889ec99eb42a2f5f7ad19668 *man/make_heatmap_matrix.Rd
b110c7edee59b36e1cba6ac56301212f *man/make_pattern_matrix.Rd
b91ce6fc317775b5c5cc2a854b7bb7c4 *man/modalityPanel.Rd
4133926c4825f17a710bd36d4bf542e9 *man/noisyr_counts_with_plot.Rd
5433f253c8c8469c1b0a0077c160a65d *man/patternPanel.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
fd4fa62c1af709bf219ce0c1c8dc18a1 *man/plot_GRN.Rd
d268321853f220742a6ac6affe6268f3 *man/plot_line_pattern.Rd
f5579c33d93aa0ee9d65ba33d7c7a8c9 *man/plot_pca.Rd
45c10c0802ff98b00198a93e508416cf *man/plot_upset.Rd
2a39e2d2d6a83c02c87f4359d40cace2 *man/preprocessExpressionMatrix.Rd
9b6b93601d32cd35db6ffda4c59a6584 *man/preprocess_miRTarBase.Rd
9d5ef26663a250342c26de6b25a97df8 *man/qc_density_plot.Rd
f3b08b3e8dcef0c64a21da14654ce6c9 *man/qc_violin_plot.Rd
b05211eea0a0a08a3c7f78ce1377600b *man/rescale_matrix.Rd
64205e5b27b5ae5f3873a046709303cf *man/sampleSelectPanel.Rd
08c3cfe43a0f6f8791f27d08e3278e65 *man/scatter_plot.Rd
4cc29005851f31731f18d54e8cf620b2 *man/volcano_plot.Rd
3e58a50ea10f141f1207b48d6b629710 *tests/testthat.R
50254b793b0c8f3f51cec3339d0d4ae6 *tests/testthat/test-GRNfuns.R
b9e104836e4dff2f6f4ada99db6471d2 *vignettes/GEO_App.Rmd
1486f7663da3baf6286403f55ef0c3de *vignettes/IntegratingMultiomics.Rmd
4286ee06ee2dc057776bff67de438fd0 *vignettes/bulkAnalyseR.Rmd
cf6fad8d5d6875a9db6f3c59a3d5bec2 *vignettes/figures/CisIntegrationExample.png
99ab4d937cdb3563c9e557f6da89a5f8 *vignettes/figures/CrossPlot.png
904869204ca4ed2423d788fa32ad1dbf *vignettes/figures/CustomIntegrationExample.png
c8150c3f5c45f016a3ebd09dcd79228e *vignettes/figures/DE.png
3f1e5af445ff1d7288c437b0d2f7f5c6 *vignettes/figures/Enrichment.png
a293a0c8d6d2869d837069a0ab1fc0aa *vignettes/figures/EnrichmentIntegrationExample.png
09e968c741e498a3b43161174fd2b367 *vignettes/figures/ExpressionHeatmap.png
68ab18505f87a2d6cd7fb2fe5565d03c *vignettes/figures/ExpressionPatterns.png
13473e2358dd70121e6a74c99040a45d *vignettes/figures/ExpressionPatternsHeatmap.png
e666c6c5f7ad9b0e732a79554c27fd93 *vignettes/figures/ExpressionPatternsLinePlot.png
bdfab824821792ee260af3f531aadbea *vignettes/figures/GRN.png
f2669f65cb2a3b8f1f5f06dd02543b7e *vignettes/figures/JSI.png
5a075cf4d42833d18bd595678382d5f7 *vignettes/figures/MAPlot.png
ac163b508098b4de68725acdca8da65e *vignettes/figures/MA_QC.png
dfb4b1680a2b771c43e7005e43e66b96 *vignettes/figures/NoisyRPlot.png
c179c763625a04486db1f77a0891dbbd *vignettes/figures/PCA.png
5d4beedc22c15e0b428d1aaf6abdcd3a *vignettes/figures/PCA_DE.png
61e49b2ac26349a6837eb9ca1c6a8b63 *vignettes/figures/SampleSelect.png
61e49b2ac26349a6837eb9ca1c6a8b63 *vignettes/figures/ScreenShot.png
c866811c92d9cc983e023345df2a5726 *vignettes/figures/TransIntegrationExample.png
89d53a60b8e53c077186e068f02a7918 *vignettes/figures/VolcanoPlot.png
7c3a71e9fe6cf54ad91223ae2961e951 *vignettes/figures/workflow.png
