306082cde316aba855bdbe04dac4f346 *DESCRIPTION
8356cdc427ef37e81cc815bda5b6a7bc *NAMESPACE
6a954864c4c9cb92e79a3273768b5ade *R/AUEformat.R
4464d3137f0c63969474e705ccdca49b *R/CKrigcoefs.R
aa18b8801f9e6c700e292468a2371cdc *R/Cpredict.R
56506f2038a70ce6491fd9bf54f8e4ec *R/Hreprrational.R
ce4fbc4dfbec815ff449da97cec713e2 *R/LRTfn.R
49aff0da229925144b499e375ae7eb6c *R/LowUpFromKnots.R
3393574e57b29d81266028d17b8e506d *R/LowUpfn.R
1ec8473f8dbfeaec7cb9364b1927c76a *R/OKrig.R
82064c842670286621d55821201c7c04 *R/RAM_fns.R
7e7e73f7d7ddacfec5be09aa50215e2f *R/RcppExports.R
eb3962b40b16f03f2a536e71bef8c644 *R/addSimplexEq.R
a876a0f952863863e4146241ba81f554 *R/addtoedges.R
4e68afd5b28eeb0e4fe36201a46d0b5e *R/blackbox.R
4e481e4e0a846065f17d6f628feae386 *R/blackbox_internals.R
e2cb41caa5c746b1512b076807e1d058 *R/bounds1D.R
ae9aba89055c862ac6ce9d723b8dab7d *R/buildFONKgpointls.R
3f2da7b37e72da3bf2533fc26b169437 *R/buildPointls.R
ab70ba6d8da917993d24ffd41c8a3c08 *R/calc1DCIs.R
1b142cdd4373f79e52bd39345e3ce079 *R/calc1Dprofiles.R
5ec834d78a17a849ff49e3c16f0acff6 *R/calc2D3Dplots.R
1196d39f3e15caf1f39b320d0df4ffb6 *R/calcBounds1D.R
87ecf5c712555dad2f1c50061f1a72a5 *R/calcGCV.R
a0cd2fa392ce97f9027a04cb65bb5cc3 *R/calcLRTs.R
7ce70abd05e7b0d46892f10b42af78b7 *R/calcPredictorOK.R
bb4a25e19deb83c8d225e793e8cb59e9 *R/calcProfileLR.R
330a711b8209a71c5ed4b233a6ed9a21 *R/calcProfileOK.R
112c1037c11d7e8ebd65398962e043be *R/calcgridRelProfile.R
c73a88b9ac837ed30fc070b6e095f017 *R/canonize.R
49db713bdd1197cdb6ca7409035e347b *R/checklogicalbounds.R
d3197f981335fcc03b587d508b639f32 *R/condaxialS2fromg.R
d96426cc42148dbc9a00d684c44f6160 *R/constrOptimR.R
74f39d36cb0b4979f1a6d5c75729c223 *R/constrSymOrRefl.R
139415d62f734070fd5a670e67eac511 *R/constrSymOrReflWrapper.R
1580d1a25949b2f1c6085af36f47733e *R/coresWrapper.R
ca5581a37ea1281fb556062b75d3ae03 *R/eps.R
4dd9fc31f05ced9c9262cd3b8fe53d5d *R/euclidian.R
cee69735136818205c65b00ca8415876 *R/findReplicates.R
32c49fe0fa63b76ee2b0a04c9940e686 *R/findglobalMLE.R
ac3f8899c3fa243234fbdde75eb89d52 *R/fitinbounds.R
9186b800f99882e69d28ad68a0ae9653 *R/formatName.R
553fcc11bab61d2cd61773754a794fb0 *R/from2Ns2Tocanon.R
b6ed4fe052f3dc4722eda7aa34d1578f *R/fromFONKtoanyspace.R
3a14c17698e337d1d25fb0daefcb0ef3 *R/fromFields.R
067771e55a97159833dcb63b28dff116 *R/generateInitpts.R
52304ade569c65481bc6a0d1012b1f21 *R/generateNewPoints.R
a90a80db67c8e502720a799e599e3e97 *R/generateNextpointsfromCI.R
44653c0916ead71acb8d198267dbdeb2 *R/generatePredictor.R
60ed9829f01277b2042cf619c2ac5cf1 *R/greedyMAXMINwithFixed.R
8e76f69ceb3a47b25c7af3aa4d019fbe *R/gridfn.R
366876c99780b0750ffa20272ceacea1 *R/groot.R
ece57eb5677b82dff1ca0adf9db306bb *R/handlesPointAtEdge.R
467ff0ec40dabcde97f64451483f71b8 *R/init_grid.R
c7d4bf2407de01795272e3c010a364ce *R/isPointInCHull.R
3080de29f725caee01f9b5628d089b79 *R/islogscale.R
591b8f8c4a7f6be9406e15098ffeafa2 *R/isoline.R
fcd5f788fbaff7d8063f444b4435fdc5 *R/knotsFromLRTlist.R
62001aef387716ac853a6bddb53c78b0 *R/knotsFromProfileEdges.R
b8a694e12ed8baed88299c6e51f2a06e *R/makeplot.R
08f3736d38448db5acafb04d0fb691ea *R/makeplottypes.R
36e9bf1af85c85b8db42a6b5dc4a0a65 *R/maketicks.R
51f3b0387abc5ca9c7804dd8345960c0 *R/mantissExp.R
f98203a5e1c2d108c527c028cdb2b473 *R/massBarycenter.R
a9139939419ced86d71a3cefc48599d7 *R/matchVertCons.R
46a2d03113170b9e6ee5fd942bc2be14 *R/maximizeOK.R
cda1806b31b593c95cd3a1a5d12406fd *R/message.redef.R
f2d114f1c150b1404007ee2031ac6313 *R/messageNAMED.R
30043dfa935ffb542a43c7b3bb209ed9 *R/myprettyW.R
6d8158da52d67fe920c720c127126071 *R/optimWrapper.R
b0f76c5b9e295b70f93a863bcbccd321 *R/overmessage.R
8762940627d287093bfba9a56034162d *R/plot.Kriglistplus.R
2f959f5f5e394fd2b59b86cf7b8f5077 *R/plot.OKrig.R
4df81236842092d805e083a12634d27f *R/plot.slice.R
947df74f51872b3071613ad575330d4d *R/predict.Kriglistplus.R
8309900f8c6feebdb53794099f1c048c *R/predict.OKrig.R
1265a0cb19e23b5abc9ea471330b1460 *R/predict.surface.redef.R
89c9996b064aea9b36dbc91889d368f8 *R/prepareData.R
bae6f8872e8dc686eb03ab62fc07cad1 *R/preprocessOKoptions.R
3ea784e625e68e7c1977b57561d74015 *R/prettyNamedUserValues.R
bfc18a64ee02edc1cc015aa8c17077f4 *R/prettyPlotMain.R
7d356148edec50e7796207cb9e88c766 *R/prettyUserValues.R
80f382dea296bbf6cac4fecbda41fc30 *R/prettynum.R
6c5c0f8b9099c62749c728ddfd50cb42 *R/print.OKrig.R
f1da9610774910a9506d114a0dfede19 *R/profile.R
eeac5671925c3f189d149256641f95d3 *R/profileFn.R
b72e32bdd927c87ede5f6297db10eec2 *R/provideCovFnParams.R
cd4406c7f7e1da186e925b90402ac260 *R/provideDevice.R
9b7d92e4abba10834404143e9fd8161a *R/providePlotFile.R
6aa1879bc550a3e7c6b32600fb8d447d *R/providefullhull.R
f43f86a596e29616cae4199d9f3c738c *R/prune_by_dist.R
d3f5aa311090d945c0603fbbd5f8f697 *R/purefn.R
f62cfc42575eff34b6317d14c8705c3c *R/rawProfiles.R
a80abcd7b3099cbe0092e7c6ab65e95a *R/redundant.addVeq.R
43785787217bcc4e2e9fd5ec8e877604 *R/resetCHull.R
baf026bb2df98e373b0617edae7ce02e *R/rhull.R
8de1f0a1ff06332739e9c59641191344 *R/safeSurface.Krig.R
dbb2d6a762fb9d49411f94661d80cff5 *R/sampleByResp.R
69bcce0261316f5c7fbf8e4ac134755b *R/savePredictor.R
dcc69ef9c9421b731477ab962674a79c *R/scdd.addHline.R
fec59a9b0c0a2382df8fdef1718c23fc *R/selectFn.R
b8cbead5c09cc315304f85081534688a *R/stop.redef.R
d95f88f5d126ce2395154699e7d7fbdf *R/stripclosestpairs.R
1bc824d245cdb7184f37210977fab513 *R/stripclosestpairsWrapper.R
bb2ad9bb19f2e96955fd8cfde95bd49e *R/subHullWrapper.R
0b966fe665298bb435a874bc9016b5e6 *R/surface.OKrig.R
a71daecdf861c570c47c17112bea390d *R/symmetricKnots.R
4d92b1c7a3e1a15fe7483941437f5197 *R/toDgmuFromCanonical.R
9d7f4dfe675628edee8bf67ac3afc76e *R/toNMratioFromCanonical.R
7f0227caa20ce441775d6c585f3ef6e6 *R/toNactNfounderratioFromCanonical.R
165f00b5f8acc758aa731de6bb84c887 *R/toNfounderNancratioFromCanonical.R
83109b2e9b283a777904db3d0d6e7f93 *R/toNratioFromCanonical.R
79c53fcfa1403d39264f7ac336304bfa *R/toTgmuFromCanonical.R
3f4ebab2a50817b13158cfd38691ec7a *R/toUserValues.R
6dd4eea650e901dc7ecdfc8d2c35580c *R/tofKpredict.nohull.R
78f3c442e0b11e3873896dc8d33fc3da *R/tofullKrigingspace.R
d2b092c209d48318376d8099ef3d6fdb *R/tolatt2Ns2.R
bbfe4ea9653e1f33b8c9206395f10dea *R/tom1overmuFromCanonical.R
cc94d639eaf250b61afccc54560ca8ab *R/tom2overmuFromCanonical.R
2e71a7b052a93139c183effea4c67028 *R/tomratioFromCanonical.R
d9ad803369ce73c21deef5417eb67968 *R/userunit.R
a0346dbafb32e9a299b80319179b2e00 *R/verticesBarycenter.R
d5cd828e4b75ffcd2af874320b519a43 *R/volTriangulation.R
d6d3ed4248a227674d272453776378b2 *R/volTriangulationWrapper.R
0324aa68137694805658f72e4a0ff141 *R/vrac.R
adedefc3fdeb08c870c006bf9c092b6f *R/writeCleanNAMED.R
c7e0eb82031a4088b5c912518b86ddb0 *R/writeFinalInfo.R
bb268ba746830c1b87b74c81a8c446e9 *R/writeoutput.R
e9a2b753c91cb87478d8196f43657107 *R/zoomProfile.R
03fd07829d71013fc0d28983ffaa9cee *inst/NEWS.Rd
668b2e17159d82b455283df0a825835b *man/bboptim.Rd
214d47db2da53ef61f29dd0d8f7e4e27 *man/blackbox-internal.Rd
ddaf37dab9b0bbe429d909407fa36213 *man/blackbox.Rd
6f3a7425d7599766e2ee7e87a41ded62 *man/buildFONKgpointls.Rd
d17bd6673997a7a56730fe898a3f2c8e *man/buildPointls.Rd
ffa31c595217360eecef6b0409d3a05c *man/calc1DCIs.Rd
d5a2ccdcb786a71852668c33de88e589 *man/calc1Dprofiles.Rd
a593139129ac1ff1a9066407a86d6f09 *man/calcGCV.Rd
aca46b2ae57c0e070fe817581386637d *man/calcLRTs.Rd
2d7d996a31edc12559a4efcc1f56e950 *man/calcPredictorOK.Rd
8038630558f0b7091159c6b834dd6a75 *man/init_grid.Rd
fb6faa62273d6fdc56e0e43a9db50eec *man/islogscale.Rd
cd83e7ebdd4326674caec8d9f0bb2b1b *man/maximizeOK.Rd
79256a5aeba6349068876055dc963853 *man/options.Rd
ac8c7de76941fa4dd7e2ca012dc32ddf *man/prepareData.Rd
b7d314c0d8909085bc6395564f1206e8 *man/preprocessbboptions.Rd
41b52ba037086b884fc76797f03a9e20 *man/sampleByResp.Rd
3c5c04185be8c31631c71f09ab41211d *man/saveOldFile.Rd
072f765e2490dbc999cdd343f27805a2 *man/writeFinalInfo.Rd
071c8815ae20672782f16214a88ba629 *src/Bessel.h
fa870ef4bc21e00f206e58aaaa4e79c1 *src/Bessel_nr.h
6fe98f40dce9d1c1ae5a42b0fc8a0b66 *src/Krigmain.cpp
62e545e1a141f0bbc4f9c226f824ae9c *src/Krigmain.h
fe2075f95e358aeec4c062888a07c943 *src/Krigtypes.h
101b72bf656b316770a98595b9ed79b2 *src/Makevars.win
04c6a5d40e3240f2ca95b16c817d0243 *src/Matern.h
0dee1d7431155f46ab48962714053440 *src/RcppExports.cpp
e025690fd4e0172ab7fefa1bf7990dac *src/gammln.h
e2295e4571e26d1cc4f6a8c0bda4f7b0 *src/intern_newCSmooth.h
1aad4b59f5298e8ad95c75e3c533c1c1 *src/pointls.cpp
ed2c2fdd73674dbb0e04fef1ff8d3f7d *src/pointls.h
5f0e5259ce42cebf9ca3f90df5ade404 *src/qr.h
d874707494b3de9ff4deb70f98edd86c *src/smooth.cpp
1a54bd5bca7cb667814ebf0a75182a20 *src/smooth.h
1ea1ce5bba5b22dce3a41495a4daad91 *src/smoothFriends.h
82b88423119a822f8bd191f6ed9cc2e2 *tests/test-all.R
1a0ca6c65c77f6c7406034eee2f31bd5 *tests/tests_private/IVCP/Rplots_1.eps
f6a0b72e04d582e4d022b746edf39308 *tests/tests_private/IVCP/Rplots_1.old_0.eps
f016b07f5a485d73997809fa5db18ac2 *tests/tests_private/IVCP/migraine_1.R
fd94c686000187673f345790ef1a1342 *tests/tests_private/IVCP/nextpoints_1.txt
960958da2b15bb9b7b4ccf63f31fc2c3 *tests/tests_private/IVCP/output_1.txt
a8fd6e8f84d94b95a04f047de91fa46a *tests/tests_private/IVCP/pointls_1.txt
889930b59331918344611dd8ddb4e11d *tests/tests_private/IVCP/results_1.txt
6f5e5dca59a48c07952cfc7e70fc9615 *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/IbdSettings.txt
11b961a2a26067b1da053e495e0d6206 *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/migraine.txt
bc6b224ec756ac0e2af63b2714302de3 *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/migraine_1.R
690a38c611e5a086652f5d8e089d9942 *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/nextpoints_1.txt
eab0e9df11e0c8a05d86379d7a9e608a *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/output_1.txt
aa81ee7175863d469bdb0fec233def6f *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/pointls_1.txt
28f78493fe2b3bfba4f634bff8f4072d *tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/results_1.txt
333908f50542fa8b7a6921dea55dbae4 *tests/testthat/test-1D.R
