d8beb68fba9fe12ffa987165a0205cde *DESCRIPTION
bdbdfef398aefa29be897a2fe717fc3c *LICENSE
87f31f30acf8cddc38dcd023b1250aa4 *NAMESPACE
95c28cf11c1ea08c7e065a2d6505d951 *NEWS.md
cf3ba91ba29fd1e36cce159c0d80d109 *R/RcppExports.R
bd1bf45e4cae80fe4d33fdbf66290267 *R/all-generics.R
83806ea43be08655441653b577871eac *R/biofiles-package.R
015f186c6f468e8ac7161787f52b4c89 *R/filter.R
1748315bf4064977e8c9f408e8eb44fa *R/flanking.R
bf528e5952cb82c8c009c2644dfc553c *R/gbFeature-class.R
92fe96c4c63830d99e62ab735eb169c0 *R/gbFeatureTable-class.R
b10e35cfa97df8fc063b792d15b184e3 *R/gbHeader-class.R
7e21da87b3f21849e42946a69a0bdc94 *R/gbLocation-class.R
c3a8bc4835978947bbbb41b1648469a3 *R/gbRecord-class.R
a301b8ba216ad948a6835834bf9e518f *R/gbRecordList-class.R
c26804e1bd6b07203fcef95d19bb4bb4 *R/genome-record-from-ncbi.R
62692dea747006d5be07e977d83c6a1b *R/make-ranges.R
16f427b0b79fcebaf7e632ee0f03e0dc *R/misc-functions.R
12cfd66b7570cc5c5a6a7b9b0a96f598 *R/parser-embl.R
1daea32bce2a6cda2df32ab8cd4aec07 *R/parser-gbk.R
f468ece094384df767fed45867ade624 *R/parser-general.R
f28ef83a69a007c9a6fc1df3ea53e594 *R/select.R
a00ca80d6117e43edd9f205019241762 *R/shift.R
726cc9485511f8d71350485a36a1ced0 *R/utils.R
da7fb6c9ec5b496ab6737d8da20be895 *R/write-feature-table.R
31d54ff0d0a230006c583e4ecdddc119 *R/write-genbank.R
02bc7a5194c791bdcb5597e12a620831 *R/zzz.R
9f401c17011192c7c79d641f7b1ad235 *build/vignette.rds
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a6fea4d84d30897c216fe4f362ee29be *inst/doc/IntroBiofiles.Rnw
65e652f60ae0cbea3bfdd6e4c1d83308 *inst/doc/IntroBiofiles.pdf
8743c4b2bd60a2bce1efcfe02aa6f10c *inst/examples/envirAsList.r
5e5645162779a7d804f2d0dd6734543b *inst/examples/flatten.r
3ed5e8e3e9da0a9b94113e5565fe7aea *inst/extdata/NC_001224.rds
b2df160062e1d1adbbef012840e4ffce *inst/extdata/S_cerevisiae_mito.gb
f30618eca4674fc23c81d4235a391062 *inst/extdata/S_cerevisiae_mito.rda
15c516ff3bbed1a5e977aac8f544ef73 *inst/extdata/gss.gb
b34ebd86d2de62525753ab2fde59b550 *inst/extdata/marine_metagenome.gb
3991a3278f2755960e88e24d08c8e946 *inst/extdata/marine_metagenome.rda
660f092adfd648ebfe3ec668cdca1c70 *man/accessors.Rd
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a7838153921c249228aabcbeadd66d36 *man/biofiles.Rd
de72322cc8354ce5c5b1369b88cafe54 *man/dbxref-methods.Rd
2ed9f85f06d6827686afab2c28af76f3 *man/dot-filter.Rd
9e27ea813a0d54d7be50250718da7571 *man/dot-select.Rd
7ccf5177985a5ea21d1a16493a2a3345 *man/embl_record.Rd
0ca99a1b1a278e3fe4cbc5c35e2d84ef *man/end.Rd
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5396bf8fea091f751590f19624cbc491 *man/gbLocation-class.Rd
28ea3159325cc9bd154df317edd48209 *man/gbLocus-class.Rd
5a381ae405c5958ffd2996c62dcc7f87 *man/gbRecord-class.Rd
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9935bd807aa86cf2a794f832532dd36c *man/genomeRecordFromNCBI.Rd
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86e8ac8a544f24a03aae2093229f7e65 *man/getFeatures-methods.Rd
0531d1b31d11827ed6a5000aca0c2f1f *man/getHeader-methods.Rd
8383ed377e7f02fe37b23e034e120e85 *man/getSequence-methods.Rd
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7c56f42c9c4335bc3eda4014bfd2cb3a *man/key-methods.Rd
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943ebeb1a9293bb5e526edd98e24ab71 *man/revcomp-methods.Rd
87ca07d357e83df5fffe487a419c36c8 *man/saveRecord-methods.Rd
2437d41a6704d5e22e15625174721af8 *man/seqinfo-class.Rd
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1338bd6b50c987db04fec33ebb122d06 *man/span.Rd
2931c1b9eb8a71a007d29b17a13d1417 *man/start.Rd
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ddcca1f43c419df329e11347b3c6535e *man/uniqueQualifs.Rd
e2275348a50ebb83c81b6d2fa647a816 *man/upstream.Rd
77c194f33ed128ab4d22fd4bd00652cb *man/view-methods.Rd
dc31abce3dcff0530b2124ae3debe55e *man/write.FeatureTable-methods.Rd
ca18b76e48b5793443400a8d73a04e39 *man/write.GenBank-methods.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
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2a1c59ce5f4719a889a16b6f0da31341 *src/RcppExports.cpp
3619d819b7c9e9e18183d3010b1469dc *src/biofiles.h
95ffeede8366059fe35e8e7c71e0907a *src/parse_feature_table.cpp
1e535c7f0c8fffdfdff516c4dc640990 *src/parse_gb_location.cpp
a3e2fb26a0f3ae9b707f17ba80769df7 *tests/test-all.R
38a7eae650d120dc93d49926c6922f2f *tests/testthat/sequences/CDS.embl
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381164889c598a52555166908656b982 *tests/testthat/test-filter.R
ff08226e1e1e1b640bdda6f0b8f1fa21 *tests/testthat/test-select.R
32cd1ec64597fb8e6ce65accde02f548 *tests/testthat/test-utils.r
a6fea4d84d30897c216fe4f362ee29be *vignettes/IntroBiofiles.Rnw
