d0c0622963b00a4156a1985992989efc *ChangeLog
4be930ee1c0d0701ef944c1f22cc06bb *DESCRIPTION
4842fc3ffc3a7a8011c31023ad4d575f *LICENSE
32fec0a0868622856e6510e3c505e9d3 *NAMESPACE
6623e403b9e3cf975e3c2691d7e570c3 *NEWS.md
5798ce82fab6c9561eadbe80bcb5ba48 *R/annotation.R
b1e6fcbd530bea6b88fc1a6fa84eb7c9 *R/annotation.utils.R
fa5cddc32b5eead18d27ba2587af2d75 *R/annotation.utils.initial.R
33b31825d66044c8d339b6a5aa44690c *R/annovarR.R
bd137ad28a99945c7f51159a042182ca *R/auto.R
b97a7ca51c8cfd3d08409eb37f200baf *R/build.R
18bdc98e349a60c3d4e1c33c0101474d *R/convert.R
5cf64c0099ae1e1450e3011b2575ba8f *R/download.R
1cde45c6f9c67a7f95c09afacd25bc26 *R/external_function.R
445d11b09a3548f3e5426c9cfbe8eedf *R/external_tools.R
9b415e57d77357fbd95aa947693b557b *R/get.R
5a24dad5d5ec4e805b7e5224927b6d62 *R/utils.R
800939ea266301001382410f67d7a6e0 *README.md
b4396731cc2277a2f88a49fe2877da89 *build/vignette.rds
12b5e61b454c9a8c07fcfdd159b8885d *inst/doc/databases_in_annovarR.R
9929147bb8f9f4dadff81fd038b0365d *inst/doc/databases_in_annovarR.Rmd
c34cea18ca7a774a013418b9d1523572 *inst/doc/databases_in_annovarR.html
03371ad299645c6e3aeea4ca4c4f5a04 *inst/doc/introduction_to_annovarR.R
06ad94c2beeb3cb5a12f3ed2294f1467 *inst/doc/introduction_to_annovarR.Rmd
562230e535d028e877f55b15ec433590 *inst/doc/introduction_to_annovarR.html
82fc27bf90681c51c647fc9225584610 *inst/extdata/config/databases.toml
c816796d08dfa521770a3b0605d7683b *inst/extdata/demo/DARNED.R
1fcb98e5ffcf76b1e283d394e7069d28 *inst/extdata/demo/GDI_full_10282015.txt
e782ec4bf9befee4de7d4bbb9dbe5f33 *inst/extdata/demo/LoFtool_scores.txt
d9031b39bd427258c65d16f74c486853 *inst/extdata/demo/RADAR2.R
ad744466661724b5de7efba9d4f7280e *inst/extdata/demo/RVIS_ExAC_4KW.txt
3aab8c64f113cfcb1b368f271c41247d *inst/extdata/demo/clinvar.R
9174f0f96a1ab7f50c036d06b1318870 *inst/extdata/demo/demo.cfg
356c1e6e4ed4eb8c501d7077c91ba3f2 *inst/extdata/demo/example.bed
f22e07f019c7ff1cc01721cdcb520b83 *inst/extdata/demo/example.gff2
2c6b5611826ce32aec3f4e93ea83d072 *inst/extdata/demo/example.gff3
d5954dbf3ca54c9218ffdf385b8a59b5 *inst/extdata/demo/example.vcf
1ecd6af6ba5f6e0beb6f0b92f7f8bdc6 *inst/extdata/demo/hg19_ALL.sites.2015_08.sqlite.sql
180ce3cdbfc64ac8ca2851e93928e509 *inst/extdata/demo/hg19_ALL.sites.2015_08.txt
1e0fa87a0d82aa00fab7a62d1021a7bc *inst/extdata/demo/hg19_DARNED.sqlite.sql
fcde3b1cc7f4adc41193bf8839a01623 *inst/extdata/demo/hg19_DARNED.txt
694cf8c8c235994d712a6ff70cceccea *inst/extdata/demo/hg19_RADAR2.sqlite.sql
cb51bf6b48a42401cd06c6b9fab5102f *inst/extdata/demo/hg19_RADAR2.txt
14273f2cdd411a8fe0b6c3c37d9b18ce *inst/extdata/demo/hg19_REDIportal.txt
773364c860eb96381f1ec8af77e5fef6 *inst/extdata/demo/hg19_avsnp147.common.txt
33071e0969450b361a1c3e4ffa81cbdf *inst/extdata/demo/hg19_avsnp147.sqlite.sql
2ef7c1561ba8b3d25f090487b22b5531 *inst/extdata/demo/hg19_avsnp147.txt
84ab314ab8af84bc12f53bfb0d7cf904 *inst/extdata/demo/hg19_caddgt10.txt
af2d6922fd66fb56dba3228c727b186e *inst/extdata/demo/hg19_caddgt20.txt
c9347f659a47a7ccab20e6ca9c26420c *inst/extdata/demo/hg19_clinvar_20170130.sqlite.sql
c7a24a6a39f109afb99269c2ed7e9b57 *inst/extdata/demo/hg19_clinvar_20170130.txt
8a4e09f865b077210ed1b41959b6d3d0 *inst/extdata/demo/hg19_cosmic81.sqlite.sql
10a34c6d1043bf3dded2d25e1a8616ac *inst/extdata/demo/hg19_cosmic81.txt
7759365385948067be7100c48d68cf68 *inst/extdata/demo/hg19_cscd_cancer_circrna.txt
f3ce8475f1bfb537a18447667bf54a94 *inst/extdata/demo/hg19_cscd_common_circrna.txt
fa9a4b3e36596a25dfea2bb65a2f9237 *inst/extdata/demo/hg19_cscd_normal_circrna.txt
1e9afd4d3cd30761f634f275559e5e0c *inst/extdata/demo/hg19_dbnsfp30a.txt
c899b0b6b73e9ce6b0290375fe8789e0 *inst/extdata/demo/hg19_dbnsfp31a_interpro.txt
6f153e3c6682c5d67e9454970f695691 *inst/extdata/demo/hg19_dbnsfp33a.txt
0872d56e61f539ca2218152856b829a5 *inst/extdata/demo/hg19_eigen.txt
c44802c0e7d09af7a25fc332bff1d736 *inst/extdata/demo/hg19_epi_genes_v1.txt
17a296b492fd305e4ae867ec02c29be2 *inst/extdata/demo/hg19_exac03.txt
f042ba700761de07335067b82a04f523 *inst/extdata/demo/hg19_exac03nonpsych.txt
de824d445e159d5d46780dcc6fcbcf58 *inst/extdata/demo/hg19_exac03nontcga.txt
94a2e9cc1466a395831598cda1ccdfa7 *inst/extdata/demo/hg19_gme.txt
1a604d0fcbfc4fe93fc38c630db58cab *inst/extdata/demo/hg19_gnomad_exome.txt
f5cdef818190478cad6915c42995cf39 *inst/extdata/demo/hg19_gnomad_genome.txt
998018e1ea94f9faa88095126723eb2c *inst/extdata/demo/hg19_gwava.txt
a81e2b2a6f430528b01bbf5d41dd482b *inst/extdata/demo/hg19_hgnc_coding.txt
74f1cc25cf2906934cabcf2f74426adb *inst/extdata/demo/hg19_hrcr1.txt
43e777f6fa90862d4ddf25e8595a8fb3 *inst/extdata/demo/hg19_icgc21.txt
253dc687e650ab6463a40a7995514a13 *inst/extdata/demo/hg19_intervar_20170202.sqlite.sql
434c3fc46e81faea49cad3d8be549eba *inst/extdata/demo/hg19_intervar_20170202.txt
bbccdedbfdca2a1dde1cfb74373863f9 *inst/extdata/demo/hg19_kaviar_20150923.txt
131b935a1e154e8ee07e9a84db5c40ac *inst/extdata/demo/hg19_mcap.txt
d16c3bce45ab8de2565fa893406a49ed *inst/extdata/demo/hg19_nci60.txt
ac73b2838977401a2270fc97b6264b7d *inst/extdata/demo/hg19_normal2016sih_wes_ball.txt
75d2c163420b314817f6a903415b30c6 *inst/extdata/demo/hg19_normal2016sih_wes_nkt.txt
adb2daebffebc66f1920fba64092c80e *inst/extdata/demo/hg19_normal2016sih_wes_tall.txt
8221d342fef8555ef0d60587749eb609 *inst/extdata/demo/hg19_normal2016sih_wgs_dlbcl.txt
4264924213d4b66c760a79d2cd417495 *inst/extdata/demo/hg19_normal2016sih_wgs_nkt.txt
c1c5e3e9f332c07877c9f79b83b589ff *inst/extdata/demo/hg19_popfreq_all_20150413.txt
f064a44b7d91306042f54c7c9183a8c2 *inst/extdata/demo/hg19_popfreq_max_20150413.txt
937e9cd23a6b8a10a3e2f3f152b42eb5 *inst/extdata/demo/hg19_refGene.txt
593b0bc646a221ca6553f7da14eaf0f5 *inst/extdata/demo/hg19_revel.txt
9e21b7dad04f32813b2d785889ff2504 *inst/extdata/demo/hg19_varcards.txt
ca8b6de7ce095677c8e3a2d99403bfb5 *inst/extdata/demo/hg38_tmcsnpdb.txt
6ada9d2f6769ea310431fb994d993957 *inst/extdata/demo/interval.R
485a8d9437e576b75f2dbb33aa435c30 *inst/extdata/demo/sqlite.dat.txt
bd7b75c47607c8420fd95ba9fbf07f3e *inst/extdata/demo/sqlite/hg19_ALL.sites.2015_08.sqlite
d35daf741ca1c4ca9f319efe2c07bbcf *inst/extdata/demo/sqlite/hg19_DARNED.sqlite
f6843d02f0f4ad8cc4364527e77e0da5 *inst/extdata/demo/sqlite/hg19_RADAR2.sqlite
1cb246389d73ff4a1ec83954f44b48f8 *inst/extdata/demo/sqlite/hg19_REDIportal.sqlite
670ab8e9e2f7372415c0553e54ac6d7b *inst/extdata/demo/sqlite/hg19_avsnp147.common.sqlite
497fb3b977051cf11654e12034cd8ad9 *inst/extdata/demo/sqlite/hg19_avsnp147.sqlite
c776e19d328a1650eb14a55f69dc3500 *inst/extdata/demo/sqlite/hg19_caddgt10.sqlite
d64799e594d49eec9f72ccdbe53be169 *inst/extdata/demo/sqlite/hg19_caddgt20.sqlite
a1516cb49fa3fee395facde97db87b8d *inst/extdata/demo/sqlite/hg19_clinvar_20170130.sqlite
dfdedb1a70d6c88e5ebc494cff075b98 *inst/extdata/demo/sqlite/hg19_cosmic81.sqlite
1a3b2a27c0640d485f4397d55e1f6ce5 *inst/extdata/demo/sqlite/hg19_dbnsfp30a.sqlite
2e3e08d9d4d8811df1f0e1c17ab31c1b *inst/extdata/demo/sqlite/hg19_dbnsfp31a_interpro.sqlite
626847388b5109afe5a7320d919525af *inst/extdata/demo/sqlite/hg19_dbnsfp33a.sqlite
8b740e8052431ae8964c779ecc03e46a *inst/extdata/demo/sqlite/hg19_eigen.sqlite
2c0b597176abf9b6dc53fad5f2564a89 *inst/extdata/demo/sqlite/hg19_exac03.sqlite
0b8577aac938ee4a600805368ddd0d0b *inst/extdata/demo/sqlite/hg19_exac03nonpsych.sqlite
5983afa98d37b05c1fc57d6e9acf5819 *inst/extdata/demo/sqlite/hg19_exac03nontcga.sqlite
7f4209e1c81ffe53702270b5dd39244e *inst/extdata/demo/sqlite/hg19_gme.sqlite
24f5e040b464856fdf6f35907e96aa0a *inst/extdata/demo/sqlite/hg19_gnomad_exome.sqlite
b491f14db19b2bb969c3f0989f6adbd9 *inst/extdata/demo/sqlite/hg19_gnomad_genome.sqlite
6b40d082b8fe3960a6e5b20ad56e7f2c *inst/extdata/demo/sqlite/hg19_gwava.sqlite
2ba4388a954baaa4a13da38b36a30822 *inst/extdata/demo/sqlite/hg19_hrcr1.sqlite
ff536dfa7d631f8dd049163391eaebad *inst/extdata/demo/sqlite/hg19_icgc21.sqlite
fd91fc468b89ec62bee701ad4f3c7169 *inst/extdata/demo/sqlite/hg19_intervar_20170202.sqlite
d3e51d4655deefbf6e9a87a45ffd78c2 *inst/extdata/demo/sqlite/hg19_kaviar_20150923.sqlite
7f094e8854cfbe625056b2669b699d9b *inst/extdata/demo/sqlite/hg19_mcap.sqlite
14c150e3607a6316f1a9f3deb7442b83 *inst/extdata/demo/sqlite/hg19_nci60.sqlite
73e0efaac05d53fef440f9597e83efc9 *inst/extdata/demo/sqlite/hg19_normal2016sih_wes_ball.sqlite
df432241a98227f61e731f34a33378d2 *inst/extdata/demo/sqlite/hg19_normal2016sih_wes_nkt.sqlite
967f238cf01c8bdf72d2bf077d989f5b *inst/extdata/demo/sqlite/hg19_normal2016sih_wes_tall.sqlite
c289a8aba8ae3a8c6342cd0acc0b8a9b *inst/extdata/demo/sqlite/hg19_normal2016sih_wgs_dlbcl.sqlite
8e18d9161a9a6a6b38b67ec95c5a1556 *inst/extdata/demo/sqlite/hg19_normal2016sih_wgs_nkt.sqlite
86f6847a181901fa8230143475236970 *inst/extdata/demo/sqlite/hg19_popfreq_all_20150413.sqlite
87cf735fec75f24deb624f08e9c1a992 *inst/extdata/demo/sqlite/hg19_popfreq_max_20150413.sqlite
d2eb66ed0dbc8401f01b571d8d515ebf *inst/extdata/demo/sqlite/hg19_revel.sqlite
dbd239e603057fe5bbaa55e628cc4237 *inst/extdata/demo/vcfanno_demo/conf.toml
c9f62608d75d15912a85d801d9b1debd *inst/extdata/demo/vcfanno_demo/custom.lua
dc1409437eba7b96bbf7fe2ae5b17f1a *inst/extdata/demo/vcfanno_demo/ex.bam
893ebd2d61738e526cf99e010207a0fa *inst/extdata/demo/vcfanno_demo/ex.bam.bai
eba4b55d81148d9c316cda68a5c0ad6d *inst/extdata/demo/vcfanno_demo/exac.vcf.gz
ec47aa09f0248f4f32ae12fb7ba03f34 *inst/extdata/demo/vcfanno_demo/exac.vcf.gz.tbi
31941f66b30b5aa0cb7e210188b63f66 *inst/extdata/demo/vcfanno_demo/fitcons.bed.gz
7f846d8ed211cbfbab9baf5ba6ede72a *inst/extdata/demo/vcfanno_demo/fitcons.bed.gz.tbi
7caff7614b0be8d9f39e7f57e6193659 *inst/extdata/demo/vcfanno_demo/gem.conf
b09b5036580288bfe57088367a9737cd *inst/extdata/demo/vcfanno_demo/gnomad.conf
141d7f674ad6e57323fb00e26fcbc5a9 *inst/extdata/demo/vcfanno_demo/query.vcf.gz
6d5332c612f9a08f1a6adbf6e4fa1dff *inst/extdata/demo/vcfanno_demo/rare-disease.conf
dbf4c68a87c1e8b1b65e6e18f04766f1 *inst/extdata/demo/vcfanno_demo/rare-disease.lua
6c2c82a88a32e8b3a6fcd17652d9a2bd *man/annotation.Rd
85051adbb7f28cf3f31f8dfafb6caf08 *man/annotation.cols.match.Rd
2fb6420ef8f600aadd50de0867781fc5 *man/annotation.merge.Rd
4eb41d7a1350448404a1015a7f60e5a8 *man/annotation.region.match.Rd
d4f93021d771333c918485b081ac0747 *man/annovar.Rd
193f986a0e839c2a4af0b85f99a1c79d *man/annovarR.Rd
c1208756b2dfccfd9c1fe451be644579 *man/del.Rd
7ff0cf7f0cc6503f47bd49b2bf8765d4 *man/download.database.Rd
ebf4583f57efb2a24dba82da8f4ab729 *man/drop.mysql.index.Rd
6fcef575823bdd800ddd8b2e215ffdae *man/drop.sqlite.index.Rd
ed0eb6728702fd284e10ff786f8d9a29 *man/get.annotation.dbtype.Rd
f7073a81d8116c6f26c9efb1717b916b *man/get.annotation.names.Rd
00e2e2f5407134c8cf05af442b58b641 *man/get.annotation.needcols.Rd
f3e56932bc5a0025610e80ec284837df *man/get.download.name.Rd
be3b9e4c78ac3f2579b81d3fefc34925 *man/mysql.auto.build.Rd
0cab34594a14721160cb750226b17bb8 *man/mysql.auto.index.Rd
c01cba5776350af88847865f4c066419 *man/mysql.build.Rd
aaf9ef9400ac4f32e941a232351a320b *man/mysql.head.Rd
d5813b9901fd10d9c2c4500c89c97595 *man/mysql.index.Rd
11aafbaaf24cddaa83a398a7408fbf98 *man/mysql.tb.colnames.Rd
4cd2f2f6a307ebd23acba03b50ee4502 *man/mysql.tb.indexes.Rd
d75bfce847ea52fca698abe33150db3b *man/sql2sqlite.Rd
12175c5ff6241c2986b4b29445cff6a7 *man/sqlite.auto.build.Rd
bfe0c1f60a317debd77b1e256fb985a6 *man/sqlite.auto.index.Rd
e0e935f88fc155ebaa1824f9b8b48927 *man/sqlite.build.Rd
c5a290f028da4a1e1e359c63623ae2f9 *man/sqlite.head.Rd
6c85f0ac10e0d520fe326a92588d2aaf *man/sqlite.index.Rd
05d96fb5e419e2535cc6c28fd522aa40 *man/sqlite.tb.colnames.Rd
b367de00066a05df50223f03a3ca417b *man/sqlite.tb.indexes.Rd
e5ba238f2a74e4cbde61071a668b347e *man/sqlite2sql.Rd
15d8d012b3fb0fc73376332c1e32531a *man/vcfanno.Rd
a168f0a4af90475837334a1d53c91da6 *man/vep.Rd
b2febab14772d531fd790084dad6c39f *tests/testthat.R
9d41ad629987a4ed92cb99bcfb47463c *tests/testthat/avoid_32_error/test_region.R
ba2f39edda0e75c4f4de8572707de12d *tests/testthat/redundent/test_annotation.R
e239ae4a834427afed79475b74d56dbc *tests/testthat/test_annotation.reduce.R
89445541bf751e72f471d21d9ac79d85 *tests/testthat/test_annotation.utils.R
c25f3acaa3463a89a04b1019146b26dc *tests/testthat/test_annovar.R
96bb6e48db96935bdfd6e703d66327a7 *tests/testthat/test_auto.R
2ff67c6e9eb7837033c6ff1df62b037f *tests/testthat/test_build.R
15514191b960106666197f370ee7e9e3 *tests/testthat/test_custom.R
0f089cad75aa91a3f0c3c3756fb609a0 *tests/testthat/test_download.R
51c14c9e2afbcf952bbcbb9e8db08721 *tests/testthat/test_external_function.R
ffcfe356d00a071180ef1930c03732d7 *tests/testthat/test_external_tools.R
96d315c5e5483cc4019a98cfbe93fbf5 *tests/testthat/test_get.R
24a729f842fc700d58762350d75370d4 *tests/testthat/test_utils.R
9929147bb8f9f4dadff81fd038b0365d *vignettes/databases_in_annovarR.Rmd
06ad94c2beeb3cb5a12f3ed2294f1467 *vignettes/introduction_to_annovarR.Rmd
