9e927ccce41fcd98698c71370c1bc9c6 *DESCRIPTION
df9872ad7632f11555a2638175ba5a93 *NAMESPACE
a44a6fbabfe985c7d82eea72f470da50 *NEWS
ec29a94f26c6e4371b99ffcb81c80a5b *R/RcppExports.R
572a078a213a807bfe774e09a6d80724 *R/combine.table.R
ff9f444b40ecdc31b79cd5437122ab27 *R/final.score.R
42e824044104438bb8603789a1df5d59 *R/get.context.R
cdc1de1705df9e7ff9ba7ee5d8a7ce7a *R/get.exprobntcx.R
4e97ae30bc8a9c2a3f82ef29fc22cc98 *R/get.nucleotide.chunk.counts.R
cd243606fc7ac9a8f22c3a9459fea594 *R/get.pair.R
ceca979c241c18b3a124e51a961040b2 *R/get.tn.R
ed7e81c0fbf86af3b63af4c54d64e068 *R/get.toptn.R
bbca4a41e1783475f6df6401e75b3395 *R/get.trinucleotide.counts.R
165a33d972070663dc296168a4fc15a3 *R/seqkat.R
d597dc02f8adcb15963e57205b7b05a9 *R/test.kataegis.R
3da8bb8dba95f023c84c64bd60223306 *build/vignette.rds
40e372f30cb0e2697ea08212dc7c05f0 *exec/generate.trinucleotide.counts
4bceadebfdd50cd680f9a93282e48623 *inst/doc/vignette.Rmd
13ca92aa443026a2860561499438aed6 *inst/doc/vignette.pdf
5fd23a02a717d6a06096b585d7bde65c *inst/extdata/length_hg19_chr.txt
9f3c7c7c11522b2863343477c6eec733 *inst/extdata/length_hg38_chr.txt
5fd23a02a717d6a06096b585d7bde65c *inst/extdata/length_hs37d5_chr.txt
186a568b7a9f89a0a37e52318d7d67da *inst/extdata/test/PD4120a-chr4-1-2000000_test_snvs.bed
40b2f470d7a366d961f8df276ff7e119 *inst/extdata/test/exprobntcx.rda
6acad036288d302e5e8310e1f6085e63 *inst/extdata/test/final.score.rda
3c55aa0ec28c76cbc5288d8de9a74a74 *inst/extdata/test/length_hg19_chr_test.txt
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr1.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr10.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr11.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr12.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr13.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr14.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr15.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr16.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr17.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr18.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr19.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr2.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr20.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr21.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr22.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr23.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr24.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr3.fa
e144a5717d663235d4e942647ba23d4a *inst/extdata/test/ref/chr4.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr5.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr6.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr7.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr8.fa
d41d8cd98f00b204e9800998ecf8427e *inst/extdata/test/ref/chr9.fa
9b67cbfb75ced55f105701b12db69328 *inst/extdata/test/somatic.rda
2cc11ffd8194c83eca99fbacdd6f3d4c *inst/extdata/test/test.table.rda
2819b139bc8da0e626dd3d4b00055576 *inst/extdata/tn_count.txt
642ab54af92bec1c922799b3848d6624 *inst/extdata/trinucleotide_hg38_whole_genome.txt
62c483d904e3371e71c448353e1cfb83 *man/combine.table.Rd
173f0a675b2191fc8e6eb15d6104fbd4 *man/final.score.Rd
7c90081694e160e025c0d96fce8e7ffe *man/get.context.Rd
e843070a80ceb4bfd98f7c2275c2d494 *man/get.exprobntcx.Rd
7c60c57520490e7dde50a023c4d7b4b1 *man/get.nucleotide.chunk.counts.Rd
a1a31ca13551a98987d786676529ce7c *man/get.pair.Rd
725b2369d739f67ac86fa6e8e2d014e9 *man/get.tn.Rd
c87ed477c34a21c24ec802185e7ddf78 *man/get.toptn.Rd
518cdbd8e0966241344609c8df0de650 *man/get.trinucleotide.counts.Rd
7100b3cf9ef2bc655ef4f8ef4a406eb7 *man/seqkat.Rd
53278e4749abd7a74f87bf721d4ea855 *man/test.kataegis.Rd
8a99bd123ecf033fc1808cff526513fb *src/Makevars
2c191867d785ec263a52669ff1533dcf *src/Makevars.win
c8d9b4a97a9c1a3739eb35510612e80d *src/RcppExports.cpp
52b09e82b21b2d390739e47dc66019e6 *src/SeqKat_init.c
7d0ee45373336dd5d64d78348f5adcff *src/cget_nucleotide_chunk_counts.cpp
e354f0dd97387af1ddb798baaea3b201 *src/cget_trinucleotide_counts.cpp
587e70fec34e92b30007d9a14283980d *src/cpp_get_context.cpp
ae32587a96720091d9d4c3ef95c3d3f3 *tests/testthat.R
aa642b09f758fcf31e1dc609273c8d11 *tests/testthat/test-seqkat.R
4bceadebfdd50cd680f9a93282e48623 *vignettes/vignette.Rmd
