a373bc5aa99454df271db0913a1a8a1a *DESCRIPTION
df3816101e9e64859fabfc2a21806285 *LICENSE
7ba6c72aa3375fe7f56dd88f1bff39f1 *NAMESPACE
a9867788104d93aff7995a46f2586d72 *R/STR_Region_Identification.R
4849dd07929d68b7ec522f27664b42de *R/all_in_one_workflow_fun.R
81deb74ebb660acd5f37418f634fffba *R/allele_genotype_functions.R
bd3985b495ab9b3d9928086fa6d0f46d *R/auxiliary_functions.R
b6a3dbfa22e85b360fed75f2529d3200 *R/quality_functions.R
ccecd8998bea19d44c838571f424eb67 *R/stutter_functions.R
930ee54419ad208f2a3207bd03bfde82 *README.md
aeaed49d82a106e51a24945ffc801049 *build/vignette.rds
51567b2ba7f2a350f7f6bce2cd0cce79 *data/flankingRegions.rda
57012bf686d2fd6c4dc68d395d196b1c *data/genotypeList.rda
c27ab1cd5e235d3fc12ea98d33d30523 *data/identifiedSTRs.rda
85b346fbdb3cd73bf5fcafa4c3a27322 *data/noiseList.rda
118a12424ce14334f6464ab113632a83 *data/stringCoverageGenotypeList.rda
a1faa6d36c44d0d7e7c874f963a3118d *data/stringCoverageList.rda
947c3ae5e3c872fcd563a96d39e41536 *inst/doc/STRMPSworkflow.R
4b9b3ba9826e3ab9e4c7d9ca7881847d *inst/doc/STRMPSworkflow.Rmd
1ecda988238df9c26354d961b6f22a26 *inst/doc/STRMPSworkflow.html
3dbcd487b09dd13e494c21bbd84de5be *inst/examples/blmm.R
fa114d82dbba7dd5e3136ae2bcf19f1e *inst/examples/getGenotype.R
293f384e44a5981af3089952638c3662 *inst/examples/getNoise.R
454ee870d0f1a8c7da76d9240970af1b *inst/examples/identify.R
051a5855db7d0cf28ae730a40028e5fe *inst/examples/mergeLists.R
a7c80109f040643c43df8273d7b5c225 *inst/examples/probabilityOfError.R
0d759b9f2cef798a346ae14aa852bc94 *inst/examples/qualityScores.R
c857bca17e2f91a7cdcfc5ccd5c2b0ee *inst/examples/stringCoverageAggregated.R
7d1d12583c83c0eb144f9a8cde42bb13 *inst/examples/stutter.R
58217e6ffd83a866799368d0b012a873 *inst/examples/workFlow.R
862eb64c5cc2508b56b4a376a4553b66 *inst/extdata/flankingRegions10plexSTRsShifted.RData
93af112fd72b56da232a68f69c5b7622 *inst/extdata/flankingRegionsForenSeqSTRsShifted.RData
0cb60584775f3cd3efa13f372e379526 *inst/extdata/flankingRegionsS5STRsShifted.RData
4341f7dc48fa8775ef4dc8d54709e4ad *inst/extdata/sampleSequences.fastq
52e122b08d1aeca14912fc8d5267fa2a *man/BLMM.Rd
722e0556a15efb589d0c9fa4a2d4e9e5 *man/STRMPSWorkflow.Rd
4dd365c0800cd350a495492c164dfe17 *man/STRMPSWorkflowBatch.Rd
41606ed2a75456745d14a72ab31b5f7e *man/STRMPSWorkflowCollectStutters.Rd
4b927fcfb9896552bf962337c5f76394 *man/extractedReadsList-class.Rd
136c43dec703557c322e41814dc53728 *man/extractedReadsListCombined-class.Rd
79ea4ca89f5589bfe144c0d41132a05f *man/extractedReadsListNonCombined-class.Rd
9c12e6820490cebc79b4f266259500e8 *man/extractedReadsListReverseComplement-class.Rd
05db708a2990a0f74034f25acf0f5490 *man/findNeighbours-stringCoverageGenotypeList-method.Rd
535a62e08b52ea4e6d94462f04ecbb8d *man/findNeighbours.Rd
194b2857126ec81bf9943a77a5f98fef *man/findStutter-stringCoverageGenotypeList-method.Rd
cfe6072a41d8425bba9aa03602df6d0f *man/findStutter.Rd
38c2aaaa7d26768ec648b8bced30e58c *man/flankingRegions.Rd
19cd32b913686c1fb05355b84dacb086 *man/genotypeIdentifiedList-class.Rd
9521b3fef5ad20e9b1de7918be2a915c *man/genotypeList.Rd
e61b856329724bd16f18c71bcf86535a *man/getGenotype-stringCoverageList-method.Rd
28f049a1db76bd7bf0ae3a1bf9c66e40 *man/getGenotype.Rd
fa4dbbf6ad8f12bd1b58ba1db157cb4d *man/identifiedSTRs.Rd
4a3793c68f13c822e4b77df36a2fc511 *man/identifyNoise-stringCoverageList-method.Rd
1343636c9cfd8654ba4bc07e4d210339 *man/identifyNoise.Rd
118a7e1b008abec590822c2bab261506 *man/identifySTRRegions-ShortReadQ-method.Rd
b6a84add8f2b144279a49593c5a95271 *man/identifySTRRegions-character-method.Rd
74d5e1d5110adf517929610dfdc2f83e *man/identifySTRRegions.Rd
fda3252a3506d6c66e01568fc82f4667 *man/identifySTRRegions.control.Rd
77b3c45e69b0442946313525305bce4a *man/mergeGenotypeStringCoverage-genotypeIdentifiedList-method.Rd
75e914857a241d2c7811bc343e2d604b *man/mergeGenotypeStringCoverage.Rd
c9864ec90365eab36c3a12afde83cd74 *man/mergeNoiseStringCoverage-noiseIdentifiedList-method.Rd
d8af135624b715395cbb595ef146aaca *man/mergeNoiseStringCoverage.Rd
b310d20d13063bd368e2f1fee4241051 *man/neighbourList-class.Rd
95202b8e88b07104f4b5524b697ba3c2 *man/noiseIdentifiedList-class.Rd
b122f6222a1dfa97841ee904b82c3999 *man/noiseList.Rd
0110b7801c97650cf5a9d3a03dbe9320 *man/probabilityOfError.Rd
8405d69009a9d792ba83eedc11b2e27e *man/qualityScore.Rd
0efaead24c10eb68c7be3fc957d67dc0 *man/stringCoverage-extractedReadsList-method.Rd
769e11284f8a56b42decaa09235ef9f9 *man/stringCoverage-extractedReadsListCombined-method.Rd
5f64fea0d489b49121b32fddaa1158cd *man/stringCoverage-extractedReadsListNonCombined-method.Rd
b76087b27755bd690b8dd6128ccdb3a5 *man/stringCoverage-extractedReadsListReverseComplement-method.Rd
f4efd02d12997b4333acf566ad8ebff2 *man/stringCoverage.Rd
3377fd8c4d36f292f8040e6bf4ffc06c *man/stringCoverage.control.Rd
63b6d387db70db5c60dc0d6183466bfb *man/stringCoverageGenotypeList-class.Rd
8db9009aca745c57e7397b139e71d159 *man/stringCoverageGenotypeList.Rd
907e6664dcd89f13b64f9ff654fb1356 *man/stringCoverageList-class.Rd
c83baf4b33d2613a750ea3a2026c6232 *man/stringCoverageList.Rd
420159428d14fc2d0fc1645d969cff7b *man/stringCoverageNoiseList-class.Rd
58287016d05a51a02b3bd01642c6eec9 *man/workflow.control.Rd
4b9b3ba9826e3ab9e4c7d9ca7881847d *vignettes/STRMPSworkflow.Rmd
5d175423f5d640ac3f87d5247f23a55e *vignettes/STRMPSworkflow_cache/html/__packages
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cca1269e899d8a9f74e69a1e9d139c4a *vignettes/STRMPSworkflow_cache/html/aggr_ed070bc7e00cfb03665db04469bdad46.rdx
9903e8e4fa03d8f98624e90d4d154bcc *vignettes/STRMPSworkflow_cache/html/iden_d7a4a4c8181e2ba1b423e2e39a7f6b77.RData
1c2862c99e3e0ca4221f6d7ceed82f3d *vignettes/STRMPSworkflow_cache/html/iden_d7a4a4c8181e2ba1b423e2e39a7f6b77.rdb
a20728e01b7391b4c0e83e0976879d24 *vignettes/STRMPSworkflow_cache/html/iden_d7a4a4c8181e2ba1b423e2e39a7f6b77.rdx
