Package: STRMPS
Type: Package
Title: Analysis of Short Tandem Repeat (STR) Massively Parallel
        Sequencing (MPS) Data
Version: 0.6.8
Date: 2025-02-21
Encoding: UTF-8
Authors@R: person(given = c("Søren", "B."), family = "Vilsen", role = c("aut", "cre"), email = "svilsen@math.aau.dk") 
Description: Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Note: that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 4.4.0), Biostrings, ShortRead, pwalign
Imports: methods, utils, IRanges, tidyr, tibble, dplyr, stringr, purrr,
        parallel
Suggests: knitr, rmarkdown
biocViews: Biostrings, pwalign, ShortRead, IRanges
RoxygenNote: 7.3.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-02-21 23:59:19 UTC; svilsen
Author: Søren B. Vilsen [aut, cre]
Maintainer: Søren B. Vilsen <svilsen@math.aau.dk>
Repository: CRAN
Date/Publication: 2025-02-22 00:20:02 UTC
