3f18b087758e5b28a605fe32eaa4c3db *DESCRIPTION
df3816101e9e64859fabfc2a21806285 *LICENSE
c2cba7ca6275dec79f77fcf63f15f27c *NAMESPACE
3db4aafed503e378bc8b4082e002c589 *R/STR_Region_Identification.R
5ede6ab46702948ff7c3085283a23951 *R/all_in_one_workflow_fun.R
4d564e2e67e59d1e17cf66e9c6191f94 *R/allele_genotype_functions.R
3604d1f21873d916878da328b5e67ea8 *R/auxiliary_functions.R
3b7041f1dbf16ae7a2739930a293b050 *R/quality_functions.R
a96e3d5ee82fe21f09ec0f2f141b716b *R/stutter_functions.R
3b6ef19de6333b96b2f1147ee2e958aa *data/flankingRegions.rda
57012bf686d2fd6c4dc68d395d196b1c *data/genotypeList.rda
c27ab1cd5e235d3fc12ea98d33d30523 *data/identifiedSTRs.rda
85b346fbdb3cd73bf5fcafa4c3a27322 *data/noiseList.rda
118a12424ce14334f6464ab113632a83 *data/stringCoverageGenotypeList.rda
a1faa6d36c44d0d7e7c874f963a3118d *data/stringCoverageList.rda
9575a5aab1455d55c34ea045c42fce76 *inst/examples/blmm.R
fa114d82dbba7dd5e3136ae2bcf19f1e *inst/examples/getGenotype.R
293f384e44a5981af3089952638c3662 *inst/examples/getNoise.R
99401d0e05c82d3f00e5f15011b31b2b *inst/examples/identify.R
051a5855db7d0cf28ae730a40028e5fe *inst/examples/mergeLists.R
a7c80109f040643c43df8273d7b5c225 *inst/examples/probabilityOfError.R
0d759b9f2cef798a346ae14aa852bc94 *inst/examples/qualityScores.R
eb9ae2b3798ae735b776cca8e1609659 *inst/examples/stringCoverageAggregated.R
7d1d12583c83c0eb144f9a8cde42bb13 *inst/examples/stutter.R
92b59f621203229aff5b88bb93cc199e *inst/examples/workFlow.R
4c70a8a612d572352947867f815e2aee *inst/extdata/flankingRegions10plexSTRsShifted.RData
773af01bbeaa8fb1554c73d12eb03893 *inst/extdata/flankingRegionsForenSeqSTRsShifted.RData
4341f7dc48fa8775ef4dc8d54709e4ad *inst/extdata/sampleSequences.fastq
b22740752b341e707a6627342e8d7146 *man/BLMM.Rd
147e6b08ddbff4e6d715f98ccd4c3a0a *man/STRMPSWorkflow.Rd
21b4e06a5d972639b61c8c3d60069b31 *man/STRMPSWorkflowBatch.Rd
41606ed2a75456745d14a72ab31b5f7e *man/STRMPSWorkflowCollectStutters.Rd
4b927fcfb9896552bf962337c5f76394 *man/extractedReadsList-class.Rd
136c43dec703557c322e41814dc53728 *man/extractedReadsListCombined-class.Rd
79ea4ca89f5589bfe144c0d41132a05f *man/extractedReadsListNonCombined-class.Rd
9c12e6820490cebc79b4f266259500e8 *man/extractedReadsListReverseComplement-class.Rd
925c925405c1dd4d44d5809ebca38a0d *man/findNeighbours-stringCoverageGenotypeList-method.Rd
ee03b272b256744804f7859044d930d6 *man/findNeighbours.Rd
94db7d6b1c55ff51f6d117ca9130b870 *man/findStutter-stringCoverageGenotypeList-method.Rd
cfe6072a41d8425bba9aa03602df6d0f *man/findStutter.Rd
c7925fbcd0d0134260e9e058b00ffdfd *man/flankingRegions.Rd
19cd32b913686c1fb05355b84dacb086 *man/genotypeIdentifiedList-class.Rd
c290161069f46840ca3f831330a538be *man/genotypeList.Rd
6d6013481d0518e119c72ca215ed424a *man/getGenotype-stringCoverageList-method.Rd
8f14d0a67aaf45a3dfa930e7d06121ad *man/getGenotype.Rd
6c03839e5cb45810d8bc5d03aef725ad *man/identifiedSTRs.Rd
84a519c63f1ae7d89c7ef2267bbaf487 *man/identifyNoise-stringCoverageList-method.Rd
a5f98aa5ff8c48a9758e3c86d1abeec5 *man/identifyNoise.Rd
5da6a7690016ff3b5a39e08255c1d189 *man/identifySTRRegions-ShortReadQ-method.Rd
a1e62a0db13eae6a7b0fa423028cf548 *man/identifySTRRegions-character-method.Rd
b1806905d4786f68a5b10244073ef8d3 *man/identifySTRRegions.Rd
9761fe98e35b784acab6f387ab878138 *man/identifySTRRegions.control.Rd
0eba6da822823708562d4d9f4f23f1e8 *man/mergeGenotypeStringCoverage-genotypeIdentifiedList-method.Rd
fd4a022503f78fdfdfbb284fcd945762 *man/mergeGenotypeStringCoverage.Rd
0f19a591eda84ee164f87ed0d1e221e9 *man/mergeNoiseStringCoverage-noiseIdentifiedList-method.Rd
21e4bf4294fa2464832f0d90b6e66a00 *man/mergeNoiseStringCoverage.Rd
b310d20d13063bd368e2f1fee4241051 *man/neighbourList-class.Rd
95202b8e88b07104f4b5524b697ba3c2 *man/noiseIdentifiedList-class.Rd
c68c68164e2a442b197f9faab6751c16 *man/noiseList.Rd
af0ae2957ab1a1f9203b2d49c5388e3d *man/probabilityOfError.Rd
c685f25696e7cef5a6da87879dee1884 *man/qualityScore.Rd
d368cbc54119aad0cbe21ccc68b076af *man/stringCoverage-extractedReadsList-method.Rd
8e429be51c886dcc74f822f4f192ca70 *man/stringCoverage-extractedReadsListCombined-method.Rd
2c24afb1390015aafe5e40af712f442f *man/stringCoverage-extractedReadsListNonCombined-method.Rd
bf262b2aa4c2854aad018edf08c25a0f *man/stringCoverage-extractedReadsListReverseComplement-method.Rd
d8f15bcd3a0212a3b70362bcc292c37f *man/stringCoverage.Rd
3a14f98e8443e3785fcc573176e7817b *man/stringCoverage.control.Rd
63b6d387db70db5c60dc0d6183466bfb *man/stringCoverageGenotypeList-class.Rd
f3e3315dea6f1e5f59e2f87ff9e4f800 *man/stringCoverageGenotypeList.Rd
907e6664dcd89f13b64f9ff654fb1356 *man/stringCoverageList-class.Rd
090ba40dec2266e5481cfd9760bd8961 *man/stringCoverageList.Rd
420159428d14fc2d0fc1645d969cff7b *man/stringCoverageNoiseList-class.Rd
b583b5d063d9207d91fb62d9a090b0c3 *man/workflow.control.Rd
