215716ad89ce9d51bf853a753564046e *DESCRIPTION
9f68ecff1d9a582f0d88aed4d79de9c3 *NAMESPACE
aabc8952542bf43bc82d79d870a7cdec *R/DESeq2_l2fc.R
16a4b201e99aa2f4215f1f20d89cc28f *R/HRSIP.R
220e8d596a0ca6df4d0a31d1f17a82e6 *R/atomX-data.R
0efa476dbf0d751422661e172e7fb5cf *R/cov_normalization_funcs.R
91651c927c105eee1f257a42367c226a *R/coverage-data.R
457174c62b5cdefe0b604e53f565a688 *R/df-boot-atomX-data.R
40361a8f9f8ff924b48cbb615cc99b9e *R/fractions-data.R
aec5efeeb4eb7b0f7e77740e5b8ad9ed *R/functions_qSIP_MAGs.R
2f44210c3cf0c3507ca67b5981f06251 *R/gc-content-data.R
858a013c28905d079cb9cfc998c0d5fb *R/globals.R
f50d8803a634f510a6497537c4577abb *R/mag-table-data.R
f96ed37d4241af68901b5ab1bab49892 *R/master-phyloseq-data.R
5873e4d60bbd59004c9f2c7b652a43d6 *R/samples-object-data.R
c00975896d0266254d3fc8786b660d19 *R/sequin-dilutions-data.R
5f939de62839558d692b69313b624efb *R/sequin_scaling_lm.R
c10f752333006be9a5fa6978c47397d1 *R/sequin_scaling_rlm.R
51076586f5fac10c841129b8fb99076d *R/sequins-data.R
ef6cda7ab30cd9377c85bf81fb191bc6 *R/taxonomy-object.R
589f077954ec10bfe2a97ef7381d2405 *R/taxonomy-table-data.R
92cd3ca043b33a3842c375f693e90dfd *build/vignette.rds
9f2ca9272c4b28ba7409853f4bffa578 *data/GC_content.rda
153bc74631d6eb75aa2019e6643e7c8a *data/atomX.rda
cd74179d78390fb6c814baf6d170668b *data/df_atomX_boot.rda
cee9d7a8ef403890a494c037246881aa *data/f_tibble.rda
baf1e6a6dbded9de02cbbf26b61d4064 *data/fractions.rda
a26209aa1e5835ceb5c80a20bbe8317f *data/mag.table.rda
1311ace26a2b30bde71d50f950de1898 *data/phylo.qSIP.rda
544386df63de46a065d0c15f0b399645 *data/samples.object.rda
da2cb67a8fcfdeb06f2ceb676a2c0e8d *data/seq_dil.rda
9868e1d0de4aaf1288479ce1892d05cc *data/sequins.rda
989efe23507e74a698eb6064243d628c *data/taxonomy.object.rda
005dec191934d4f4cb3cdf9b296289ee *data/taxonomy_tibble.rda
3f2692b2644bf7e3c68d248962954d42 *inst/doc/SIPmg-vignette.R
f4de03454eb85405e9904da60959a2fd *inst/doc/SIPmg-vignette.Rmd
474fb929d26a42da8df52857122438d4 *inst/doc/SIPmg-vignette.html
3259e87396510a355e05d28550370824 *man/DESeq2_l2fc.Rd
075a77c73d104f90f3e78a9d7d2a6cfb *man/GC_content.Rd
d499d2da767f7d1cf63a4f3a6d39f3d7 *man/HRSIP.Rd
7b29d2c0070d8b73215dba1e4efbbd23 *man/as.Num.Rd
27d0f331afd727a29904ee6bca056374 *man/atomX.Rd
30e0adf626f86b457c0f082a45b9406c *man/calc_Mheavymax_MAGs.Rd
ff29d98778fcb54fad1ccbc59a22f713 *man/calc_atom_excess_MAGs.Rd
8624bb9a5e7750e48c098b3a45e93f60 *man/coverage_normalization.Rd
556fb3b7db24415486142f02fce21b49 *man/df_atomX_boot.Rd
9de9ed39c9e3c3dc3ced675a008c603f *man/f_tibble.Rd
23eb92ac32a714bba2121175f69a4b26 *man/filter_l2fc.Rd
1a3e4448cb86f7e0f060a797d5f9401d *man/filter_na.Rd
5cb89cfaf58c10f426bb4545f7cfb480 *man/fractions.Rd
c01b83a120456ed627f985a033be278f *man/incorporators_taxonomy.Rd
638021ab71c2f7091cb0a3088078c2db *man/mag.table.Rd
1e3d2381e7639a657048b4ecbea733fb *man/phylo.qSIP.Rd
b17d991a51d132ea9e3cadc8f27dc65d *man/phylo.table.Rd
e7c93340a5034ab32df8fbc42c34a945 *man/phyloseq2df.Rd
20dd3416edc68adca7f5d4fe56fc4d89 *man/phyloseq2table.Rd
7f1a5ac0d71e4500c4e9fa1528f6489f *man/qSIP_atom_excess_MAGs.Rd
9b6714b7de630f9efad51104bbc5f523 *man/qSIP_atom_excess_format_MAGs.Rd
98abe316464e4290dcee43e148390881 *man/qSIP_bootstrap_fcr.Rd
f09ef18167b21866ce1c5bffd1d251ea *man/sample.table.Rd
f242aca41b416e7925b328bbbce9f5c7 *man/samples.object.Rd
07dd378777212d1c2f9f0e281fd8c290 *man/scale_features_lm.Rd
9828b97e35dd5c8079fa11bafde4b089 *man/scale_features_rlm.Rd
5f1c0805d4074be692cbbbae73108deb *man/seq_dil.Rd
3bc10f512f0f5d8d0bfc580f983fd603 *man/sequins.Rd
905783344c30e86cf77cb8ed5c2002b0 *man/tax.table.Rd
821775376570f528b06492c5185752d1 *man/taxonomy.object.Rd
ef0a3ec7610137cb7f30c6864df6f2ec *man/taxonomy_tibble.Rd
f4de03454eb85405e9904da60959a2fd *vignettes/SIPmg-vignette.Rmd
75feb0fe97591f2f60d180ad08f73a20 *vignettes/cooksd-example.png
cb389f1feb1261261e267096c8f7990c *vignettes/filtered_lm-example.png
5211d4a3dc59890a582a5319f26c6b0e *vignettes/lm-example.png
9e28b4e35a9702fb0e29f75bf33e6360 *vignettes/mock_input_data/GC_content.csv
17c3e85ecfd10d473d83bd728a8a97a3 *vignettes/mock_input_data/coverage_metadata.csv
3c80898f6047f774af3991b58a45dfad *vignettes/mock_input_data/coverages_outliers.csv
e873abd796eb16b557b17bd3eabcf877 *vignettes/mock_input_data/dilutions_data.csv
658983cfbaa6536779f5d95fb07a28a6 *vignettes/mock_input_data/fake_parsed_bin.csv
0b36f9f691a657b1661c7effeb315664 *vignettes/mock_input_data/fractions.csv
7050412fb8ffc05a559d68de6e9e4b2b *vignettes/mock_input_data/fractions_15N.csv
9797b977924293444eb0bd06ec8ba367 *vignettes/mock_input_data/gtdbtk.ar122.summary.tsv
2e2ffbcb85c623085dc529a5c61d7816 *vignettes/mock_input_data/gtdbtk.bac120.summary.tsv
73d4f64e1ce0e27b00e438329d8d687f *vignettes/mock_input_data/parsed_raw_cov.csv
e2ee10f31668a7895e87231f34847fc2 *vignettes/mock_input_data/pool_bin_stat.csv
c583fa489fac856b1be7042583122ac0 *vignettes/mock_input_data/pool_bin_stat_w_seqins.csv
60269379366d69bb05f0fc3d163f725d *vignettes/mock_input_data/seq_dilution_outliers.csv
8cd92292b3695fa149466274fa03469f *vignettes/mock_input_data/sequin_meta_outliers.csv
7c1d08d18c91a2aa92d830d948b9aad8 *vignettes/mock_input_data/sequins_metadata.csv
e9727f784b2898d7472857f143577ad7 *vignettes/rlm-example.png
