df37d9d42ff6dbe685419788eac58ced *DESCRIPTION
c3d8557158c1810a7ee2575e8fbad382 *LICENSE
617a70013bf7717c36eb0f48d1d54082 *NAMESPACE
47122025265a9bd33a991e03a35fd0f9 *R/classes-model.R
4f4e008222b4696e60ea902fbab80000 *R/classes-plate.R
f37233c42dc9b59e521bfe678d7663b1 *R/classes-plate_builder.R
d2412cae782fa21cd1a3b4146fa409e3 *R/config.R
f8bb7ad8f92962e68541409ad5b1e239 *R/generate_report.R
40ada4934a60d847e6e115d3d203819f *R/get-nmfi.R
0a5678e8c487369d5974464dfcbaf67e *R/helpers.R
291d274de325bdabb8d687186233811b *R/parser-intelliflex.R
be288b6a0b726afe0faf552d1c80b71a *R/parser-layout.R
0671cacaa04d05a78d75cbcb929f9ec3 *R/parser-xponent.R
fc2bc863bfbb3d2ed40a09843b80ee05 *R/parser.R
0f717157d9900ba3a5bb572f1fea5050 *R/plots-levey_jennings.R
4d701eb16535cede345ad0ea16d8b40d *R/plots-mfi.R
77a92c206c6cce4c4ccd49986857cdd6 *R/plots-plate.R
b6113e4ba50bc8b81a0df1d814239a09 *R/plots-standard_curve.R
f72b227f2cf9f8268a022440e87bd91e *R/process-dir.R
d5dfe799f7178aaeadb44b67dc92cd17 *R/process-file.R
618929255a413d0134f7015da454212f *R/process-plate.R
81016774f5a82f63d406821f3e71be0d *README.md
5571281b2dfa7b1555149a6e676a9142 *build/vignette.rds
0cdcf9ec8723b0d802284cbd6e340bf4 *inst/doc/example_script.R
b19ab8e840a5605ab5483670bbb0ea2a *inst/doc/example_script.Rmd
a49a66c8004cb1afc17b2443b182a354 *inst/doc/example_script.html
ba0d83923af38f4705ff0315d2d50050 *inst/extdata/CovidOISExPONTENT.csv
50cf560cade437c2fd7ae4ad70b76054 *inst/extdata/CovidOISExPONTENT_CO.csv
3a8488d2f80dff8e8e2a0d1132b62230 *inst/extdata/CovidOISExPONTENT_CO_layout.xlsx
c9ffca5061b9276e63d8e947b5353fc5 *inst/extdata/CovidOISExPONTENT_CO_reduced.csv
3ccbb3578f9c840cdbc0a3a793d7edcd *inst/extdata/CovidOISExPONTENT_CO_with_holes.csv
dfcde4ddfaf93ebbbf657de07400971e *inst/extdata/CovidOISExPONTENT_CO_with_holes_layout.xlsx
c35f45e27d6a22f4aa5106030d567dea *inst/extdata/CovidOISExPONTENT_layout.csv
dae315223d83bba34cef826b4fd3ad41 *inst/extdata/CovidOISExPONTENT_layout.xlsx
782dc5174f48ccc5ea3fb32a92bbd72d *inst/extdata/CovidOISExPONTENT_missing_rows.csv
6e3831b826ac064ca21bcbd7ab06ac05 *inst/extdata/external/Chul_IgG3_1.csv
d6ca0b096c82156b8360923ca56fc54e *inst/extdata/external/Chul_TotalIgG_2.csv
d1f6b8515c97adaef4a199a471b7abdd *inst/extdata/external/New_Batch_14_20140513_082522.csv
13157c7e3a02d24b385167bc1ac889ab *inst/extdata/external/New_Batch_6_20160309_174224.csv
6357a2ea25f6a8e8d28f31c6348cd937 *inst/extdata/external/pone.0187901.s001.csv
ecb693efb12fcacd69aaf19dc56b5adc *inst/extdata/multiplate_lite/CovidOISExPONTENT.csv
ecb693efb12fcacd69aaf19dc56b5adc *inst/extdata/multiplate_lite/CovidOISExPONTENT2.csv
c35f45e27d6a22f4aa5106030d567dea *inst/extdata/multiplate_lite/CovidOISExPONTENT2_layout.csv
c35f45e27d6a22f4aa5106030d567dea *inst/extdata/multiplate_lite/CovidOISExPONTENT_layout.csv
98fe1e4eea0f11222245d44fa577f4aa *inst/extdata/multiplate_mock/other/random2_xponent.csv
5787446831c3c88e6a745203ebd44ec0 *inst/extdata/multiplate_mock/other/random2_xponent_layout.xlsx
98fe1e4eea0f11222245d44fa577f4aa *inst/extdata/multiplate_mock/random_xponent.csv
5787446831c3c88e6a745203ebd44ec0 *inst/extdata/multiplate_mock/random_xponent_layout.xlsx
cabafd7f46396cef90aae0ec09cebd46 *inst/extdata/multiplate_reallife_reduced/IGG_CO_1_xponent.csv
d3c60a8729cf249e8bfb9e0907a6d9a2 *inst/extdata/multiplate_reallife_reduced/IGG_CO_1_xponent_layout.xlsx
9f6fdb541710539527a1a4911a1a4ae5 *inst/extdata/multiplate_reallife_reduced/IGG_CO_2_xponent.csv
e2f9831cc5e3dd61e11a915bc55db361 *inst/extdata/multiplate_reallife_reduced/IGG_CO_2_xponent_layout.xlsx
6096cf87492f324ca66af7b1ae6302f4 *inst/extdata/multiplate_reallife_reduced/IGG_CO_3_xponent.csv
43991e43f13b6b84503a66c469b597e1 *inst/extdata/multiplate_reallife_reduced/IGG_CO_3_xponent_layout.xlsx
be279339738478891878c639819688d8 *inst/extdata/random.csv
98fe1e4eea0f11222245d44fa577f4aa *inst/extdata/random2.csv
7d23d40c866d1eb50ded3ac40277df3c *inst/extdata/random_broken_colB.csv
f2d7a56c4d8281e59043b9add76e5067 *inst/extdata/random_intelliflex.csv
5787446831c3c88e6a745203ebd44ec0 *inst/extdata/random_layout.xlsx
d880d8798b2450e0d1ab5269f489ebd9 *inst/extdata/random_layout_no_standard_curve.xlsx
be279339738478891878c639819688d8 *inst/extdata/random_no_standard_curve.csv
245088fad4d6d2ca90db897ad63ff780 *inst/img/96_well_plate.png
f657f5baba6fa834af5b4ff03dd07629 *inst/templates/levey_jennings_report_template.Rmd
bf7ae68de59e6bbd326c364748f7ff62 *inst/templates/plate_report_template.Rmd
35b56502cdabc642cca2c0600a9afa7a *man/Model.Rd
267fbe7183166529e7a03dece4252932 *man/Plate.Rd
b2da56d9100df1c8136e7377b1ffc933 *man/PlateBuilder.Rd
6f9c24954b9aa5d2ef4f0a64c10162ba *man/check_path_equal.Rd
4da96975165aad7e368ddb1a312bafee *man/clamp.Rd
86114522076f76829ba8ddc44f826b56 *man/convert_dilutions_to_numeric.Rd
d158988032f57d5668f4862841e0f1db *man/create_standard_curve_model_analyte.Rd
f06f40a3d25d1a9a9aab1ac51b111140 *man/create_vector_without_holes.Rd
af38f73fecbf9ed476d41d0b059545af *man/detect_mba_format.Rd
f5064b03ed8451ca3513e621b0bb8f3d *man/dilution_to_rau.Rd
01e4ca56fed38e13a1dc347782ecea4c *man/extract_dilution_from_names.Rd
cc16e29500258fe5a161c1c6a1273a25 *man/extract_dilutions_from_layout.Rd
d9982445ab5a55be953cbbd6fd7e7208 *man/extract_sample_names_from_layout.Rd
fbb51e16ac10dbb84ba083540c1a0d65 *man/find_layout_file.Rd
5b1db78eb1653d6c4abba4571342a910 *man/format_dilutions.Rd
e05c0cdd5705443c596d08f1f9d7d4ac *man/generate_levey_jennings_report.Rd
b3d67cfe28f1e2dd39246fb0c4710b20 *man/generate_plate_report.Rd
7641860415be14405c4ef49d34f292c0 *man/get_join_value.Rd
0f69e429f0e49f7cc6cc08cd15668186 *man/get_location_matrix.Rd
9a3490d3608ee2a57719c104146b2e77 *man/get_nmfi.Rd
2eb434fd03026f5beb8ffb852b9eae52 *man/get_output_dir.Rd
ece68442db9556458c72e5b685dc8052 *man/handle_datetime.Rd
2a2c2d3e1c2c7caa9bb4d4f12eff70d2 *man/handle_high_dose_hook.Rd
d446891eaa44da8987b66c6666033e89 *man/is.decreasing.Rd
76acab1aa7d22605ca0fde115174184a *man/is.scalar.Rd
57e989365803a121e03c20ae4cffe6f5 *man/is.str.number.Rd
e56291665808b1a77eb64bfc054bb660 *man/is_mba_data_file.Rd
09833a862e57a27f7d83172fd94a697c *man/is_mba_format.Rd
62acc051e0040c0788f209d0369212e2 *man/is_outlier.Rd
ba58ee8a09c4fb1378ca5f4a2a68ba66 *man/is_valid_data_type.Rd
0127cfa1489798f323f50d2365ef37e6 *man/is_valid_sample_type.Rd
348b5549f6ec20bdec98708a790239dd *man/merge_dataframes.Rd
a0c8e0ca5a059814893485967647882d *man/plot_counts.Rd
d46eb8fc7ff7cba211c22f5ff751fd63 *man/plot_layout.Rd
85e21867d664a53dd08b04acf55feef1 *man/plot_levey_jennings.Rd
6639f8bee5b33f53068a92abd15b80bf *man/plot_mfi_for_analyte.Rd
6f5dbe7af75803192ab827d19d13e8e1 *man/plot_plate.Rd
6a1c3c750f42d5f38479199cedc480e0 *man/plot_standard_curve_analyte.Rd
4c6a3f33888f7d5e722ce32261052424 *man/plot_standard_curve_analyte_with_model.Rd
6fd726ba853d4237057f5959cec377ca *man/plot_standard_curve_stacked.Rd
2fd7eec2a5c25af62c75690d37a81790 *man/plot_standard_curve_thumbnail.Rd
78af64d102a152fa66243bfbc03225bb *man/predict.Model.Rd
621b194730d46cae4b913c4ca5e87963 *man/process_dir.Rd
7df80d6d7c38b9710fbe635eb544ec17 *man/process_file.Rd
821351f0093d86b09be1b8150851d21a *man/process_plate.Rd
310261442bcc60545fffa3c17c677065 *man/read_intelliflex_format.Rd
40ac1d51d56c2b9931c567e5ec54ea50 *man/read_layout_data.Rd
78eed71374c9680b10229e00240e43c3 *man/read_luminex_data.Rd
12a4c172fcde1a6888d010013ef8d94e *man/read_xponent_format.Rd
2cf5be754aa4b83160402cb37646eb3c *man/remove_empty_lists.Rd
f88e2069c5f8e4e1352a0aa18c3083a3 *man/select_columns.Rd
08923269ced3bf3a05eed438884d7092 *man/sort_list_by.Rd
06a0c58f2f185c1a67557238598af8c2 *man/translate_sample_names_to_sample_types.Rd
7687ce41332744696228bf7f552acfe9 *man/validate_filepath_and_output_dir.Rd
7fe4e9da22ca2524ff766a3b5a93721a *man/verbose_cat.Rd
ef2ace327cf4e13ee6b7667c91ee5e93 *man/verify_character_join.Rd
8d085339846a06f373341ef843dc4771 *man/verify_numeric_join.Rd
41c75ef1957c89448841df434add1b8e *tests/testthat.R
f08a5caff566b1373dd6d6239d921379 *tests/testthat/test-generate_report.R
fc0c9d66314339ec5e2a1ea42d47ad33 *tests/testthat/test-get-nmfi.R
a40f00d4f070857cf357f8869402ae84 *tests/testthat/test-helpers.R
47b92e324e53c13da2929b69cf33ddb0 *tests/testthat/test-integration.R
a088f1d63466c9c70049da982bf9a138 *tests/testthat/test-model.R
1bcdbec93a399dd4fdd7b4797755c483 *tests/testthat/test-parser-layout.R
7ab1469c167a4e2f7376b873337f977f *tests/testthat/test-parser-xponent.R
b3ca2e0241b5db0b8d5bd85d166ba75a *tests/testthat/test-parser.R
2ac0ff03bddae81ef73ad18f0b038d4d *tests/testthat/test-plate.R
abb4ba5847c2e92cad16104f6e7fc9bf *tests/testthat/test-plate_builder.R
a282bfe658ee4ef40bc2aed01d2b5f1a *tests/testthat/test-plots-levey_jennings.R
928b56dcca06f5584d4f3197e31bd200 *tests/testthat/test-plots-mfi.R
5c4f39f473171bc903cb3eeee6e45670 *tests/testthat/test-plots-plate.R
5c47b3f0f8d9debe290acdea0f5453bb *tests/testthat/test-plots-standard_curve.R
81fc9fff4d97c2c602a0b8dc4c33e3d4 *tests/testthat/test-process-dir.R
957212f45dd0f9b537b7c759fa1102d6 *tests/testthat/test-process-plate.R
b19ab8e840a5605ab5483670bbb0ea2a *vignettes/example_script.Rmd
