12a2111d30690518a5ff52b667f61ba7 *DESCRIPTION
a1910902fe49f8890168a5f4748a568d *NAMESPACE
6cb59c1aa4b777f56d53c9a45d645aeb *R/OGC.R
2bf9f9299352b9c15a043edc075a2f45 *R/add.array.R
a693bfca4d671924764a0b1ec122c078 *R/add.combi.R
8ad0f86e660b963f40ff399766960e00 *R/add.diag.R
c21eb8791ecc1ec31b88f56581a7a79b *R/add.founder.kinship.R
d43c6f8c02d4143da353c062bd1af35c *R/analyze.bv.R
d5d22acc2870f9891fdbfd231c882b3e *R/analyze.population.R
75add7d1d20385a38d332a882836807b *R/bitwise.storing.R
0d340af6f00ee94414cea0509a04b1f6 *R/breeding.diploid.R
0b0f68fbe864456e1dbf964b74e2949e *R/breeding.intern.R
0d50ca69078d506e238c2397812c10aa *R/bv.development.R
3461b32fde5da066a7beec6a6f72c387 *R/bv.development.box.R
d2f6453c59c63e7dfceda6a781766822 *R/bv.standardization.R
d97b50a608d4261bbbc914d53cde7451 *R/calculate.bv.R
973ce61883b5d090339c6da117acc7a9 *R/check.parents.R
fa2bd70c2e4faba2d5fb11d0e799875b *R/clean.up.R
4c59699f53ecdc21a65d7397d83fb35b *R/codeOriginsR.R
3c3bbfd3a7d83a00071bd39c410ae6eb *R/combine.traits.R
0d5df8e3e74c792099a8d3a36aea31bc *R/compute.costs.R
320f28f307fce73d480c34291f88693f *R/compute.costs.cohorts.R
7f8cdec3d13f73af2eabee5b67b8d4f4 *R/compute.snps.R
91e383b6ed1b586a79d674fe3b6ab537 *R/creating.diploid.R
9b6d78000b73e6619212e95c98a6842b *R/creating.phenotypic.transform.R
5444ff45773c053683cd9b65149412c1 *R/creating.trait.R
881190acc027a23bbfa4363cbbf93cf1 *R/demiraculix.R
2af723ff54aa8150be2926002393742e *R/derive.loop.elements.R
792ddb6ec69b63dcb9f12944521a5441 *R/diag.mobps.R
b7108906e45e0323c89144fca91b75a3 *R/edges.fromto.R
fa4a2abca5c3d9301682219077e07f71 *R/edit.animal.R
8e6c0cb462d829d7ed025d067acf6dd0 *R/effect.estimate.add.R
a3aa6b272ce406d45a76935d86896b37 *R/effective.size.R
85a83c51c17adc621923ddf253489997 *R/epi.R
a988c59a97a22056abd7f4f3393bfa15 *R/example.dataset.R
d71c35e074b563db6c67a9051e598037 *R/find.chromo.R
3903bc2ef39038adb8666e3befb53a72 *R/find.snpbefore.R
0459a83be1e2dc169c5860eb5164366c *R/founder.simulation.R
34a6077a1f1a73e2970ee450bf786454 *R/generation.individual.R
4cbc78dc60fd61401232de6067c75a69 *R/get.admixture.R
8b46d6aeea09f6bf326c5ce4a21b0a03 *R/get.age.point.R
97a7e7a191a6eddbb9a221c6cee9ad9d *R/get.bv.R
94b74038e9290067aa1558be38867206 *R/get.bve.R
2c75b38bb950416789c0e89c4acb250e *R/get.class.R
971c510d92bbe058f381241de8eb86ec *R/get.cohorts.R
2f91f33651ef5b2b88a00f15568c1e37 *R/get.creating.type.R
bdb7a74c50ddafe139430e1b379afe9c *R/get.cullingtime.R
2df22d83f98a5369c7e79c0af5a2b6dc *R/get.database.R
7667a2fa3964abbc0753b7ec0d533d5c *R/get.death.point.R
ccd1a7ad89123829ca69511b2a05b097 *R/get.dendrogram.R
55fc59b07ee8c50b4f884d8c7daf38db *R/get.dendrogram.heatmap.R
69f36004cc3109ac675237fa0421422f *R/get.dendrogram.trait.R
90e3e0f47ddd18ca72b8e87ecc57d42e *R/get.distance.R
e754fa4265354843a478cd2a5dffa5c2 *R/get.effect.freq.R
e5d89bdb86cb5809d595874912415527 *R/get.effective.size.R
03e75235883c95e075be79dcce46d777 *R/get.geno.R
d93cc75160bf7604f3e95c2a8b540ed6 *R/get.genotyped.R
6af13758697703cf823905349d70288f *R/get.genotyped.snp.R
715fa7a38be6b8a58e4b23bb957b67fc *R/get.haplo.R
c26f5b139b69a9403f4342eaa98a05e9 *R/get.id.R
aa1256f9cf9364fc2b052c8ee9cdf48d *R/get.individual.loc.R
b2f612dcab66db05d7e2759a20e95b63 *R/get.infos.R
3deab6dd7ec0037b6efa08a31a867d01 *R/get.map.R
181432a2851b2f81057d9e2e92f0063e *R/get.npheno.R
a6986d953924edaeefe5ed4d1079778e *R/get.pca.R
bedc7f8515f987b98e8cfab61af9a9c8 *R/get.pedigree.R
18b3771538373dded6e276337e6e6799 *R/get.pedmap.R
95743e2eb8965c4029d71e6d4cde7226 *R/get.pheno.R
f5c0f1c3c371302970d37b9f1a925815 *R/get.pheno.off.R
370e7579efc96e23877114af4fdedab0 *R/get.pheno.off.count.R
cde28aa3bfff76bbefe5f913c4665be4 *R/get.phylogenetic.tree.R
f84d5bd60865f2f7c724c918201dd151 *R/get.qtl.R
5fbd6ace2e814d8b6653cf7148b96708 *R/get.recombi.R
7ca7246d62ed17f9e4566a40d13438bd *R/get.reliabilities.R
42c1c75673db72f0147d44faccd9c510 *R/get.selectionbve.R
3b61579b6d9986df309d6d1cd0bcfb59 *R/get.selectionindex.R
3ded277fa1f32864072b1742911e5fdf *R/get.time.point.R
6539705d277ece649585cd189afcd941 *R/get.vcf.R
dea88d7ad947357a799c97e973175fff *R/group.diff.R
3c93e99e0d5faf904bf157b40febe497 *R/insert.bve.R
9353f8375c5373b4e773d3d072c84c0f *R/json.simulation.R
4417405e2777ba52b56f80fcb72fde8f *R/kinship.development.R
4b6ff1218ad8e8283c63444f31cce821 *R/kinship.emp.R
3d44c613264c7375b3fa408c7cd8a9c6 *R/kinship.exp.store.R
19c0216261eace6b413ed65e00a45f91 *R/ld.decay.R
49e538506bdffe7aba059ad11adef8f8 *R/miesenberger.index.R
c2f7412875f6aa81a861c65f562009f5 *R/miraculix.R
03762b409bf67d03de858449d1a65226 *R/mutation.intro.R
6c831ef58187608b95299e80ff55c28b *R/new.base.generation.R
afdf995b248a413d0a23f64f804c0481 *R/pedigree.simulation.R
783373ce7133cf2781ca233db2d12dcf *R/pedmap.to.phasedbeaglevcf.R
06a30cf9ab968e6013a366893910659d *R/plot.population.R
5c8b2c08eea13df011eadda6b384112d *R/set.class.R
c87e119133ab3b661e0a448eb9458eff *R/set.default.R
8323b2e9074af8533883b12bbb7c1f41 *R/sortd.R
d1413975b3bb732c80855d7646606e02 *R/ssGBLUP.R
499d4dff808cbf513fcdfc85427f41ea *R/startup.R
b5867dc70716e1290be71ec7a1894951 *R/summary.population.R
3da1b06ba1d9ed6826174f7a9875d79d *R/vlist.R
2f66a67dd33badea80303dcdb7bacd3a *data/cattle_chip.RData
3a37fb9568ddee1a4dfe6a9bda3da90e *data/chicken_chip.RData
a519f275efa9bbb8ccd711b90347787b *data/ex_json.RData
211436b7f6d14e63ef6591c005d86406 *data/ex_pop.RData
508f3085009cb4f5af01e8e5440a3dc5 *data/maize_chip.RData
a1a16edb7a0ff1113805e45d1ed3a464 *data/pig_chip.RData
51148e064dde0caf38269a0a40375e9d *data/sheep_chip.RData
a22b73cd8eecf2a4ca5dae979333ffb8 *man/OGC.Rd
fd3fb7c6bc9553af2a2a765fb80fb38f *man/add.array.Rd
2977d50f852e566001cf398cf9421a24 *man/add.combi.Rd
c91ec963dc90668d9b4cd4d6b0ce6a76 *man/add.diag.Rd
ff5bc23508f6e0b5225ae1a11a14809c *man/add.founder.kinship.Rd
cc7b06a4026b3411b08cde64023bee6e *man/alpha_to_beta.Rd
688a42b6d60387a6b7e7978beeca607a *man/analyze.bv.Rd
766a0839757ceb4db13f4c165d6c35aa *man/analyze.population.Rd
354e0494c1425509568792d74367fcd7 *man/bit.snps.Rd
1b1f0b9e0b420e7a18077b1723ea993d *man/bit.storing.Rd
810d4621899e157c648b298a1ab53eb1 *man/breeding.diploid.Rd
37ce30fc66cc15bfee8302d3c233a195 *man/breeding.intern.Rd
1124c89458ec3a990419fcc3e03009eb *man/bv.development.Rd
b70642dcc8de9bf07ca08a9624557990 *man/bv.development.box.Rd
f6ee853adf9b642d2fd8e42d063ca3bf *man/bv.standardization.Rd
557a365586cc9cb8e2e03652588a05a6 *man/calculate.bv.Rd
3f446ee16bcfba4c1d184a1029611fce *man/cattle_chip.Rd
3766cf4b440b8ffe20c58609bf8af4b6 *man/check.parents.Rd
9c009b2e2e9a3847629ef0655cf20043 *man/chicken_chip.Rd
424bb091adae9e425a10585656ed4364 *man/clean.up.Rd
3e00d9d9407b3efea5827edc191a28ad *man/codeOriginsR.Rd
53aa1785c9671b054da2db65af2a1407 *man/combine.traits.Rd
ff324d63ccb18f8fe10ed929a3bbe330 *man/compute.costs.Rd
56d9e59a6cdc0a7dfd00a4d813b6b7dd *man/compute.costs.cohorts.Rd
43b0a68944a52b2de3f448e177a66895 *man/compute.snps.Rd
23b79827427d358c6b83877b1445bca5 *man/compute.snps_single.Rd
c0d53fa159001e333f015e0da1a1e6b0 *man/creating.diploid.Rd
9a8e2d9756983b8db0679280c110a956 *man/creating.phenotypic.transform.Rd
6bfa153c8dab3ccf8a7e9369040e511e *man/creating.trait.Rd
f019e3a0fa850f4b83be5acc039e3388 *man/decodeOriginsR.Rd
a86fd85641ad6fe650ecb5191775f3b0 *man/demiraculix.Rd
3a37665d81a6f3ffbd800d9f6eed14a2 *man/derive.loop.elements.Rd
b57cf05dca247dbf4f7c7d2e4c42fca6 *man/diag.mobps.Rd
08a2163fcd5a73988471d5f5e7438005 *man/edges.fromto.Rd
dcfb7f211217e29906ad7d32489c38a1 *man/edit_animal.Rd
92af7034e7be2e581247814ceb47afdb *man/effect.estimate.add.Rd
342dc536ea35161c295032c3a949cb7b *man/effective.size.Rd
bb60e0ec91949a4746ee0786da360b69 *man/epi.Rd
b1998c44f0f409b7c17cd4a44f1566e6 *man/ex_json.Rd
f6bcbba5505ffe07aaa6d7bf11558cc6 *man/ex_pop.Rd
a9e935184fc841705ca6a0d396656b78 *man/find.chromo.Rd
de67733ccd758cd65921779ace3e661c *man/find.snpbefore.Rd
b85830f0c4f7d61cc879436c609212ce *man/founder.simulation.Rd
7e3d4084946e464cb26d7951524854c6 *man/generation.individual.Rd
a829dc4e6d80905739774d4461c103f3 *man/get.admixture.Rd
1345f200375ca9aaac6f954eeb13c495 *man/get.age.point.Rd
474bd8bdcf93c23744840e2401ff0715 *man/get.bv.Rd
657862a43a4092ed3d5de4954e7b8a71 *man/get.bve.Rd
a71a1c24ab27e297d2234790e1c77d80 *man/get.class.Rd
e01af81b0a728a4d617a5add08d911c1 *man/get.cohorts.Rd
235bd54e3ea4cba99bfc1d3610fd60b6 *man/get.creating.type.Rd
6babc21687d858af03bdbb0309d46855 *man/get.cullingtime.Rd
a618f8de1df2d3f16fb5cc55f1ed5302 *man/get.database.Rd
bccb5ff113aac9636193cd032ccdcd42 *man/get.death.point.Rd
c636c899d7449fac744ff0b78afe38a9 *man/get.dendrogram.Rd
edd777f84fffa4fd4496669ffb3ae6c3 *man/get.dendrogram.heatmap.Rd
15ba98979e60c8f96fe0e70472b32d6d *man/get.dendrogram.trait.Rd
8826dd20b40d1cd3998a8bdc66b063fa *man/get.distance.Rd
fb6ba399c90937a7c034addaf6b0f70c *man/get.effect.freq.Rd
4381bf6dc4721f5466c37c09585f6570 *man/get.effective.size.Rd
bbe336e8727677df351b6db46617ab47 *man/get.geno.Rd
824e0933323c3a86672f9373f0a5e8e8 *man/get.genotyped.Rd
48ea8e40549e3ef90264784babda2f02 *man/get.genotyped.snp.Rd
274d8a48df5ee490eba028f2cb36bf97 *man/get.haplo.Rd
f870caa1c3780e2236e6163a01f7a62c *man/get.id.Rd
be390bc269fb26219689e040b5c2c00b *man/get.individual.loc.Rd
9141a0589b4f00ec41c198915188426d *man/get.infos.Rd
3a53b6c9cba6eb93f4eb9b2342568b96 *man/get.map.Rd
a362608a1214984772429201521240a6 *man/get.npheno.Rd
e478c88c13d1a4b1d940ad6304988cf6 *man/get.pca.Rd
622a8bf0c87d21a052e6181364e43999 *man/get.pedigree.Rd
2df4dd3b6ae0442242a37397e2ab05a3 *man/get.pedigree2.Rd
cee7f4988be5dda9b46db1cd2f8d0d4e *man/get.pedigree3.Rd
1b7ee5f2f8e97af0f597a27d54fab094 *man/get.pedmap.Rd
233e133f5887e9ea11b313da41380896 *man/get.pheno.Rd
60a9b021a57a4df1bf4afe8805a1164c *man/get.pheno.off.Rd
6bda2c0f3abb974be1cf4619a78e6871 *man/get.pheno.off.count.Rd
7751363a14f5517aee9e8fb91c57b2e7 *man/get.phylogenetic.tree.Rd
701a0d8d7f2a19b474fe5fa28a0f0001 *man/get.qtl.Rd
bbc1363eeea9c627eceb475328282702 *man/get.qtl.effects.Rd
ee7260e97ff647556837315ec150bec9 *man/get.qtl.variance.Rd
1f24f22280559687403b18e14fc8472e *man/get.recombi.Rd
e2c6903395c7e0ed3ef79d706cd770b5 *man/get.reliabilities.Rd
cf517ad6e42618ce0c477a0582966c44 *man/get.selectionbve.Rd
ad560d5f5629c989858feb85add8a54f *man/get.selectionindex.Rd
888289c8bb11cf2ee0f636eaaad1cd98 *man/get.time.point.Rd
80f0cf99cee3122d3a7989950170b4e3 *man/get.vcf.Rd
b00e19b894a24d52d1c98c531fe36225 *man/group.diff.Rd
8448f0167f68005f0d468af21e9dcf3e *man/insert.bve.Rd
00e4b04d2f84f5abf2d1b2b50d1512fa *man/json.simulation.Rd
2566e25f662dceaae755d989d7fcf608 *man/kinship.development.Rd
ef3a9dbf9db70aede9dcc40708d0d968 *man/kinship.emp.Rd
e6dae6d9fe37c936fc4659f3cbd6b0ea *man/kinship.emp.fast.Rd
ed962f18b4f7fff8d4f813130f06a591 *man/kinship.exp.Rd
a9deeb16cdc8de42a8ce54f6d06cf1b2 *man/ld.decay.Rd
9ca25be439f3d8459e9e2b246a7f927b *man/maize_chip.Rd
d1df231ad956a9bb63a2352bd464c06b *man/miesenberger.index.Rd
df0ac836e0d8586299fbae177bfe7170 *man/miraculix.Rd
30b4732f46b3ff4c664302f6254a658b *man/mutation.intro.Rd
831c5dc8b665724c549d66cfcf14ec01 *man/new.base.generation.Rd
de30f66c1172ef904438d13b43204b0c *man/pedigree.simulation.Rd
f4a5f2ac76cde6be9019af8c95d6b349 *man/pedmap.to.phasedbeaglevcf.Rd
fe387fd887bf068e17e99a9441549443 *man/pig_chip.Rd
7068f5fd4adb1164242a4794c430fe72 *man/plot.population.Rd
58eabf87e02fec0662ac1aeb34d5abfb *man/set.class.Rd
d5cee6ea7e4ebb6e63e0913d1e681bb5 *man/set.default.Rd
72ab98941d617fdb7d85f374905e4e62 *man/sheep_chip.Rd
de0d12b513bd330ab217445e5c717d95 *man/sortd.Rd
0e6de8374e258b2922fd4b6b0a307d54 *man/ssGBLUP.Rd
5a700cb47e36b6c49902bdb4621a6214 *man/summary.population.Rd
f05465666d852726a15944c9547e82d7 *man/vlist.Rd
