f1e86ac56efadbc699b51be0ee51cbd5 *DESCRIPTION
e51a30a3763d1bd788bcab510f40cd90 *NAMESPACE
e65ac0edc962ee99758da01f0a1f3bb7 *R/OGC.R
bfd2cbbd80fb98a31d192c4245c89f54 *R/add.diag.R
d43c6f8c02d4143da353c062bd1af35c *R/analyze.bv.R
53b5973fdf87f95a1dca911371aff2c5 *R/analyze.population.R
75add7d1d20385a38d332a882836807b *R/bitwise.storing.R
fe24be211bfd76554b84d51d57e0a3a6 *R/breeding.diploid.R
adb3f0d158ddead051f1aaa341d6eafd *R/breeding.intern.R
abaca02047f65e7e3ae57418f296d4c7 *R/bv.development.R
09387318d3f904e76bae2aeb356b4ed9 *R/bv.development.box.R
d2f6453c59c63e7dfceda6a781766822 *R/bv.standardization.R
d8dc2e3191f19c2696ee75dbdeb52e45 *R/calculate.bv.R
fa2bd70c2e4faba2d5fb11d0e799875b *R/clean.up.R
69f7e19626e0d9a8c11cdd29eabe8fb8 *R/codeOriginsR.R
5a81b1116f680a5cf3fd9597c618c891 *R/compute.costs.R
b89a3c2b0bffe520b7dcdffbd1ce56f4 *R/compute.costs.cohorts.R
9d513406971fa9ed7b4eb9a9d9cef959 *R/compute.snps.R
32501ef54dc5c2dc32f71b9e9e6f51ce *R/creating.diploid.R
c6dad3fb7d01de6e7da4d3b58f5d0656 *R/creating.phenotypic.transform.R
030043a8c44e295785b5ae60445e24f3 *R/creating.trait.R
c410db0a03828c370abd9f972bc7b681 *R/derive.loop.elements.R
0e191274d4cd28d33365715ea87754d5 *R/edges.fromto.R
a34f1e6a45ba938a601302afd1a8895e *R/edit.animal.R
1d8c83069ecb673329c9e2d09b842805 *R/effect.estimate.add.R
1f98062a2297967ced45056653ca7fff *R/ensembl.map.R
85a83c51c17adc621923ddf253489997 *R/epi.R
a988c59a97a22056abd7f4f3393bfa15 *R/example.dataset.R
861772a60cac26c066e72a663f514616 *R/find.chromo.R
5baf54a7f3649f15bf1ab19f17aa11da *R/find.snpbefore.R
3e92511f9f0202019aeaae30569ef188 *R/generation.individual.R
64fde6fc6501823487a8ebdcba88fc50 *R/get.age.point.R
e3c01766caa184a5e3576e493b707e92 *R/get.bv.R
d96c68c754651fa6ae9a0856ecba6517 *R/get.bve.R
2647c29de2e1f257e3c7648a3afd233f *R/get.class.R
971c510d92bbe058f381241de8eb86ec *R/get.cohorts.R
44e7bc7d47ede6108c99e1c6b7855a5c *R/get.creating.type.R
14edb0dbe4a657e1b18889df9cbd2bcc *R/get.cullingtime.R
cf2664f6b3c7381d78ae7405888241b9 *R/get.database.R
b83dd409a592c7ba42dd3624206cf69b *R/get.death.point.R
73d004d905b097d7286bf001683497ad *R/get.geno.R
0a2ec33f9bf5f5476c7f769e1f4be007 *R/get.genotyped.R
59793d4e89ff80bf31e2deaf00bd613f *R/get.haplo.R
9f05e838d906a7173f3bdaa191888313 *R/get.id.R
aa1256f9cf9364fc2b052c8ee9cdf48d *R/get.individual.loc.R
fc59cd84eb5a33c502c77954ddc89141 *R/get.infos.R
3deab6dd7ec0037b6efa08a31a867d01 *R/get.map.R
763cfd8cb2534404b94b30cda8f2c53a *R/get.pca.R
1800dd4e28b6ef9ed56ec3b30b56cd04 *R/get.pedigree.R
691d08f615a2c710f61d94566ec1c001 *R/get.pedmap.R
1dd07a3c2fa87290edbe55c4e1598f19 *R/get.pheno.R
1671f4d611889fa0029bb516729ee811 *R/get.pheno.off.R
f03d2e27a6780d4c11e50a6c1cd8aefe *R/get.pheno.off.count.R
953cfe570b6ee442a602817360f022b6 *R/get.recombi.R
a50ab9a1aeb631794541e94724060e22 *R/get.reliabilities.R
24d0c24c0af6096d371776aa38c94cb3 *R/get.selectionindex.R
f91b1d3eaf4209d85bd95f6eb04dae59 *R/get.time.point.R
786ed191665c8e072e52376221169c90 *R/get.vcf.R
9a0fc8d7d4bea5c91be23d1f126841f6 *R/insert.bve.R
c3ea37fd5d72f8fad936c487dda6ea26 *R/json.simulation.R
a16d146f79f41987848cb890f78977f8 *R/kinship.development.R
55d726575bc6e1bdc98cc0be7e494070 *R/kinship.emp.R
79cef0908d1e713fdfee13e821ffd731 *R/kinship.exp.store.R
2645d493d4da1ec780643a8e7431e84f *R/ld.decay.R
7ccdc84a3aff57c6d2ff7eae5d9f95da *R/miesenberger.index.R
03762b409bf67d03de858449d1a65226 *R/mutation.intro.R
4fcdf9e5e81d3e130ac0b5a300c507de *R/new.base.generation.R
8aab9c36d740d3da89f5ad245e092ecc *R/pedmap.to.phasedbeaglevcf.R
b92de8be5a90e08806b5fba17994a3be *R/sortd.R
b38884b2658e25a518122cfcf1d3704f *R/ssGBLUP.R
a33538826b10c7e15c6d8f182107e089 *R/startup.R
90f1371e578ec01bc05fd1da1178b455 *R/summary.population.R
48cd5cff623e8cea0a657b658b882dce *R/vlist.R
2f66a67dd33badea80303dcdb7bacd3a *data/cattle_chip.RData
3a37fb9568ddee1a4dfe6a9bda3da90e *data/chicken_chip.RData
d4ba3788f541ac1319358a17fd9e8426 *data/ex_json.RData
795e496b2f49a0a8ca2bc17968fe3eb2 *data/ex_pop.RData
508f3085009cb4f5af01e8e5440a3dc5 *data/maize_chip.RData
a1a16edb7a0ff1113805e45d1ed3a464 *data/pig_chip.RData
51148e064dde0caf38269a0a40375e9d *data/sheep_chip.RData
5d373cbd41c76feded398f176b3f9e52 *man/OGC.Rd
718a73237859c71b898d21d4ff2044d7 *man/add.diag.Rd
cc7b06a4026b3411b08cde64023bee6e *man/alpha_to_beta.Rd
2ad57c8acf446a1ad1f417c5f323f328 *man/analyze.bv.Rd
3a1a4e0c8222b9afa308fe370c9ef3e3 *man/analyze.population.Rd
354e0494c1425509568792d74367fcd7 *man/bit.snps.Rd
1b1f0b9e0b420e7a18077b1723ea993d *man/bit.storing.Rd
603c40cfd8d7236e86d3df7d4e96796d *man/breeding.diploid.Rd
8a7e419b37956d4ef1ffe082745d410c *man/breeding.intern.Rd
9b6f368bceeb3e2cdbe6cd416622faa0 *man/bv.development.Rd
4e02a5d314800cbaf5c53ecd37fe6363 *man/bv.development.box.Rd
cbd0186ee1eca016617712f548a45fb3 *man/bv.standardization.Rd
f17e0b6c1c341cb4a66776f28fd9111c *man/calculate.bv.Rd
3f446ee16bcfba4c1d184a1029611fce *man/cattle_chip.Rd
9c009b2e2e9a3847629ef0655cf20043 *man/chicken_chip.Rd
424bb091adae9e425a10585656ed4364 *man/clean.up.Rd
90478d52583dccc037e89f0ea340a9a5 *man/codeOriginsR.Rd
099c772b4b04b0c50a082d5ca964416e *man/compute.costs.Rd
1fc47a2e0dcef72ed3caaeeb32f05570 *man/compute.costs.cohorts.Rd
09e0f324cd34eab4663169d22e3df984 *man/compute.snps.Rd
f69a27a655b46d9207163a2b40edb6cf *man/compute.snps_single.Rd
91698bb0513bfe32af65502d77fee1b1 *man/creating.diploid.Rd
d153e9a9a2dd9cef1cc61b8a4110b8ed *man/creating.phenotypic.transform.Rd
66a9e276feebc03e1846d540669634b1 *man/creating.trait.Rd
62ad95354821933c38b0edbb65d3df10 *man/decodeOriginsR.Rd
39ee88467c7f150fa5fad511414b274a *man/derive.loop.elements.Rd
696bfeba524fb1dde6962b84b7abee86 *man/edges.fromto.Rd
44d3cd0723007bc0e20ceb358636b551 *man/edit_animal.Rd
2e5c7c19bb2d7d0c6c3870ced16c4147 *man/effect.estimate.add.Rd
7ad8a5399b618390b4d668792eacb90c *man/ensembl.map.Rd
bb60e0ec91949a4746ee0786da360b69 *man/epi.Rd
b1998c44f0f409b7c17cd4a44f1566e6 *man/ex_json.Rd
f6bcbba5505ffe07aaa6d7bf11558cc6 *man/ex_pop.Rd
a042565f4ee2be25a92c959402390002 *man/find.chromo.Rd
662b5da216b109bdec64b8f39393b359 *man/find.snpbefore.Rd
88e04f6ea33241b2a2652f667378aa82 *man/generation.individual.Rd
3c7f1c6b2cb854b2282fc1a56de93455 *man/get.age.point.Rd
1d55ec3baa75706130cbf3c9ff028c41 *man/get.bv.Rd
fffa11172b65aee6e43fb007160b4492 *man/get.bve.Rd
788789a2ce1ae8b3604b4996e8a6363d *man/get.class.Rd
e01af81b0a728a4d617a5add08d911c1 *man/get.cohorts.Rd
f0821c3d82397ae7338a281510c34607 *man/get.creating.type.Rd
cc27c1e503a329ac30a64f32d1da88f6 *man/get.cullingtime.Rd
a618f8de1df2d3f16fb5cc55f1ed5302 *man/get.database.Rd
9887760a2a5b9c71e68135202e3536d6 *man/get.death.point.Rd
b154f10d144a881e75fc9f204698207b *man/get.geno.Rd
6b0c8c2c7c2a033b8def8615a0329ce7 *man/get.genotyped.Rd
7cde27d67c4058cba0ce2a5730f9763a *man/get.haplo.Rd
6ff08137c0f873c62bceddc32510544e *man/get.id.Rd
120690e2ecb3263ee1d57297c96fe6d9 *man/get.individual.loc.Rd
31165efe566f4e3dfc800d040d959270 *man/get.infos.Rd
3a53b6c9cba6eb93f4eb9b2342568b96 *man/get.map.Rd
d5e9a33a2903815c113ff48182508d6c *man/get.pca.Rd
aeeb5481fded555eecc8b75f3ba79ebe *man/get.pedigree.Rd
62aeb70bd4a1f1433fe07794149f15a6 *man/get.pedigree2.Rd
cdc3bdb2e2ec5e5e4a23f60e8deef134 *man/get.pedigree3.Rd
fd158bdc35060231830277da35dc09da *man/get.pedmap.Rd
4fd8fb513928afc31396df3ae241d9e1 *man/get.pheno.Rd
235effbfe8f14caab6743fdf68ff9733 *man/get.pheno.off.Rd
40763b93d8d6a3503162e94bb53f63ba *man/get.pheno.off.count.Rd
7ce66f6d31263108afadfcbc6a84818f *man/get.recombi.Rd
0ddf0adba3d47fdfd22e1bfc25e4e5e8 *man/get.reliabilities.Rd
10341f9425b85b017b7f7d65c8692ca8 *man/get.selectionindex.Rd
501f812bf8fbc82654c96e23cb89952d *man/get.time.point.Rd
a7518d0e8e1bd47f56e0ddf31aa5158a *man/get.vcf.Rd
0c790f12f2f0959ad7049c458b4bc92a *man/insert.bve.Rd
69e962a19359224309be8a6728bdc0b8 *man/json.simulation.Rd
d07bc71ff925a3f1b5b47bbca033a123 *man/kinship.development.Rd
f2beb0975f1ff3a527585d1f2e711be2 *man/kinship.emp.Rd
011a85d74520f42e5e7e195eb7bfddd0 *man/kinship.emp.fast.Rd
f29d7263362f31956063681d50ee2799 *man/kinship.exp.store.Rd
d7c95302b3ec681719d833d2f926f3c7 *man/ld.decay.Rd
9ca25be439f3d8459e9e2b246a7f927b *man/maize_chip.Rd
623ca202f1d6dcc6ca123dda351eaa5f *man/miesenberger.index.Rd
e07c124f4d8fc1dd269467583d9b6be2 *man/mutation.intro.Rd
13464841096281ded3d90f61a64e0512 *man/new.base.generation.Rd
0f9b9b6b5dadf44269e3e347e29ac7e0 *man/pedmap.to.phasedbeaglevcf.Rd
fe387fd887bf068e17e99a9441549443 *man/pig_chip.Rd
72ab98941d617fdb7d85f374905e4e62 *man/sheep_chip.Rd
69a0ca918910266bfd1cf25ebde64cca *man/sortd.Rd
0e6de8374e258b2922fd4b6b0a307d54 *man/ssGBLUP.Rd
5a700cb47e36b6c49902bdb4621a6214 *man/summary.population.Rd
c9807c0f5e3e6f258d3c2d2b1217f5e5 *man/vlist.Rd
