2d9e91e0380bf2807e4db6c34dba50ab *DESCRIPTION
96c7c7b8f6eb679a62544cf466ee5c53 *NAMESPACE
0ab8456597f85425236d5344fad130a2 *R/QC.R
b382e928179972bb0a85ad96f01c4241 *R/multiRegion_SIM.R
4f45b1ac99b253af789501cd198dbc81 *R/summaryStatistics.R
607550ef20aa0b17517f8abaa1d1daec *R/user_functions.R
4289f85024afefc4bb4403ae8a7d8401 *README.md
fca46a010d09b9ade32c9fff45508ec8 *build/vignette.rds
ad37e4bd4f215d002cf696664a8e8b1b *inst/doc/CFTP_method-vignette.R
416b143a19c4a5ee190a8c97213f95f4 *inst/doc/CFTP_method-vignette.Rmd
02770dd19a4f28f3ce8b4b089a7071c1 *inst/doc/CFTP_method-vignette.html
27e46bb5042ac2520d3bbcbdd2ad647e *inst/doc/intro-vignette.R
b20157a933ad4e74545c43c95c5d4452 *inst/doc/intro-vignette.Rmd
c8d9353bcc17b126bf6fbed61228ee1c *inst/doc/intro-vignette.html
c5cce57dba13a060abf1bee33a32b238 *inst/doc/sumstats-vignette.R
889c8c47f4797e1624ec7c6f563f7166 *inst/doc/sumstats-vignette.Rmd
cad7d0c6b68d5775b089a4695fa81917 *inst/doc/sumstats-vignette.html
8ee6221171baecf3d24b6907676eeecd *man/MeanSiteFChange_cherry.Rd
1b7bfe6d9195dfb40fa2e8b78dbf9a56 *man/categorize_islandGlbSt.Rd
ab4d8a3c41d05e68a62cc49172ea4f79 *man/categorize_siteMethSt.Rd
2dc17fc54e12bde08331af443211df62 *man/cftpStepGenerator.Rd
d555c9a434a6423710fc7aff01d772fa *man/combiStructureGenerator.Rd
15b70d1fbed6dbaa91f4de195e32de52 *man/compare_CherryFreqs.Rd
8c9e766037fb7ca01357ff7442135827 *man/computeFitch_islandGlbSt.Rd
465a72e9f59fa5d26b3b9d622b3b959c *man/compute_fitch.Rd
25279b58f6115ed3dcbd16fc4e8e8b8b *man/compute_meanCor_i.Rd
2a4d64e04dff24268317039346c762ac *man/compute_meanCor_ni.Rd
e2aed6cbd7d899660645b701a50e7c6d *man/countSites_cherryMethDiff.Rd
1cc605f16bc2359aff37fa016c791c14 *man/count_upm.Rd
ada4875ee2ff0695949efa9a1e1edbb1 *man/freqSites_cherryMethDiff.Rd
cf8b61ee2f19b219b4b139dd2df1d20d *man/get_cherryDist.Rd
6ffe19287c27b4192491a2705dca50f0 *man/get_islandMeanFreqM.Rd
2dafba805676f9267532222f97ebddd9 *man/get_islandMeanFreqP.Rd
5f2ea8927cac026f79dca928bbcfbc8f *man/get_islandSDFreqM.Rd
4106a1402fd209a90a91e5e006c207a9 *man/get_islandSDFreqP.Rd
76e67c1869ec55754e9dd5a635a184ff *man/get_meanMeth_islands.Rd
d129a54d7e4853f5f6358ab87e04125d *man/get_nonislandMeanFreqM.Rd
755805963f75ffcfb6d3d5b832bda421 *man/get_nonislandMeanFreqP.Rd
6e4700f5b59cb331d3ec7dfbb7236d1f *man/get_nonislandSDFreqM.Rd
bb81f73d23282e6a5d3eb45df91f39b0 *man/get_nonislandSDFreqP.Rd
816e3788ebdf4601b2d11ae33a8689d3 *man/get_parameterValues.Rd
1df95994aee6585b72d75977fd628994 *man/get_siteFChange_cherry.Rd
5a25c8e117ede0f5531d30efc98adef9 *man/mean_CherryFreqsChange_i.Rd
a39d25f55b58b69e4b2efdc65cba1054 *man/mean_TreeFreqsChange_i.Rd
6ec06bb7812a2650c6822d532abd1e43 *man/pValue_CherryFreqsChange_i.Rd
fcfd8cc2107dcc49845c1781687505d8 *man/simulate_evolData.Rd
b141b5745713d7abf2fa2b55b2febcf7 *man/simulate_initialData.Rd
544668f1af8a11850b605a23aba74192 *man/singleStructureGenerator.Rd
e90ffed161fbbfa66ad9db8e3890fcbf *man/treeMultiRegionSimulator.Rd
3fbd6538183fa6460146c7fb1b83f15a *man/validate_dataAcrossTips.Rd
9e1077ac781f64a32b4e0bea8366a385 *man/validate_data_cherryDist.Rd
fe1653678ac01d555f21c4190447a724 *man/validate_structureIndices.Rd
525dc8009b12f60425ce12451a054f9a *man/validate_tree.Rd
f5c801bb11673267c77453276bb75c36 *tests/testthat.R
3a8327498476a78868a74cb5ce306368 *tests/testthat/test-QC.R
a6e745f6c12d4f4a650458c633190c97 *tests/testthat/test-multiRegion_SIM.R
ae70adae5f44b5b038ab596cd3430a9c *tests/testthat/test-summaryStatistics.R
846ba40e26cb1549f09ad61f17fb9aa4 *tests/testthat/test-user_functions.R
416b143a19c4a5ee190a8c97213f95f4 *vignettes/CFTP_method-vignette.Rmd
c673936eb61eeff2eabc5554a2022f96 *vignettes/Figures/CFTP_testConvergence_paramsID_01.pdf
e2ca2b78bdfa30b8312de10cfc6bb459 *vignettes/Figures/CFTP_testConvergence_paramsID_01.png
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6a771f143067c5e9c858cf518f6efd59 *vignettes/Figures/CFTP_testConvergence_paramsID_03.pdf
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247242071d86f312f283bf0789ab56dd *vignettes/Figures/CFTP_testConvergence_paramsID_07.pdf
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9643c035bfb3c0b124f051b0c868fb99 *vignettes/Figures/CFTP_testConvergence_paramsID_09.pdf
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eea241d5e530abc2b3fed2fb45b23279 *vignettes/Figures/CFTP_testConvergence_paramsID_10.pdf
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b20157a933ad4e74545c43c95c5d4452 *vignettes/intro-vignette.Rmd
0932c70687876060471d5afc11550644 *vignettes/references.bib
889c8c47f4797e1624ec7c6f563f7166 *vignettes/sumstats-vignette.Rmd
