eadec3705460763fe890ce988ec0fd04 *DESCRIPTION
d9f7f9c2e88703d70898bc71ad7e5a6f *NAMESPACE
6250176b9432725ca81af491704c4b2b *R/RcppExports.R
a5a3aace01462450372dd5c14848c4a9 *R/ancestry_module.R
945687b1d78ee482d146b164138c13b3 *R/calculate_allele_frequencies.R
16b85cbc3f01d1db2db5f392563486a2 *R/calculate_frequencies.R
307a8a41ba844c1f6858c4ff6d507574 *R/calculate_fst.R
9deb94c9f884cabf5104314d85ec94f1 *R/calculate_heterozygosity.R
919c4b437e34d407e014103ee520474a *R/calculate_ld.R
c891ac647a346a834df32c277780b88b *R/calculate_marker_frequency.R
2db4c02abcafb1b0204ae3e0165d4245 *R/create_input_data.R
cb881f00ab79520107a693cdf4a9e06c *R/create_iso_female.R
713601994f25cf3b5006f72f78eb3f4d *R/create_iso_female_data.R
7ac579ba688ea5114031d0eb3e0c9985 *R/data.R
c2d17d222664207dae55941303a545a6 *R/joyplot_frequencies.R
fba84ae4dd685544c435d979ca5a26ef *R/junctions.R
1fc041b85ddc7ed066140b39b06ab4e3 *R/migration_settings.R
52b67bd537ea9f55a00700c8695e6dc7 *R/plot_chromosome.R
2e8fd451e5619b4bfb2b7496c59497e8 *R/plot_difference_frequencies.R
4ee1500b6a3ee5007b31f5e8f38d002e *R/plot_frequencies.R
61d6b2ac0eb9702772b69aa6b661bdd0 *R/plot_over_time.R
5d77736c7af2141afd659f3ab21a6b97 *R/plot_start_end.R
7572eacc03cd4c737e1beea25f416224 *R/save_load.R
eeb34227d604278e4b3937bbb5729e5f *R/sequence_module.R
2e8460462960aa4c1854829c17ea1f47 *R/simulate_admixture.R
a9114a3de927ef13dca5718bb22a90dd *R/simulate_ancestry.R
80c47eff87cb152c2a8b92e9979c9842 *R/simulate_ancestry_migration.R
578b32839e9b4ff11a7e78a73ccd8434 *R/simulate_ancestry_until.R
4d1777c556be8cb2865051a3c442dab2 *R/simulate_sequence.R
e84a1d21a4c98bfb8f966a7f19c8747d *R/simulate_sequence_migration.R
afc53bead53a5bf6aa509c1fd2d7b430 *R/simulate_sequence_until.R
dd37dab2c4dbda2a654b7f2407205f5b *R/utilities.R
12a8218672f45c630e8d2000deee67d4 *README.md
d9ddeef22b8a2701e2e2bee163e40cfa *build/vignette.rds
eb58c0531f57b4bbb4e5cf3c958b8896 *data/dgrp2.3R.5k.data.rda
212dfb80c125ff102eca3914e818b298 *inst/doc/Demonstrate_isofemales.R
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a90b04aee6ae27ab94b7f07d65058d48 *inst/doc/Empirical_data.R
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fdd68e2b6cf78fabc7eb03c65936580e *inst/doc/Joyplots.R
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fffdb292c8c5b5ba8dc423c537d6909f *inst/doc/Joyplots.html
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d5d9506b768eb6652aa1f7fa3ed7792d *inst/doc/Visualization.Rmd
ee80d1cfc0a708e3bc669598aafb9d91 *inst/doc/Visualization.html
f809c31f4c34b86e8ce42151959fef11 *inst/doc/Walkthrough.R
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64f2ac6c84db75cabd6f22e02834f2b8 *inst/doc/Walkthrough.html
31e604d4d081196060d853babd3f3c4e *man/GenomeAdmixR-package.Rd
f644c5e814b6a4f5a7a56a5d5465287d *man/ancestry_module.Rd
a172adee4bade2ed2037935a345ef1d9 *man/calculate_allele_frequencies.Rd
e6ab4b310bc672d470a375a3d713114e *man/calculate_average_ld.Rd
790975f96816121022a027f671db5f4f *man/calculate_dist_junctions.Rd
1b5acaffabd26ad3b8bab60e9c430dfe *man/calculate_fst.Rd
7ecf7289ef0eb3fa63ea6de3b16b91ec *man/calculate_heterozygosity.Rd
29d516effbc0bb26cfa410b396fe023b *man/calculate_ld.Rd
bd9799b5f3756bb383e4a7771c0bd56a *man/calculate_marker_frequency.Rd
1ca714d518264bce35202067e17c4aa3 *man/combine_input_data.Rd
3a72296c58d45c5f243c5499318410b1 *man/create_artificial_genomeadmixr_data.Rd
61e337bbfff2ec1ffb4c884d7db87a97 *man/create_iso_female.Rd
df040b2e23a972b4829d0abdf0c195ad *man/dgrp2.3R.5k.data.Rd
0cfc39a2703de3f188d5c35227d7edf6 *man/iso_female_ancestry.Rd
4731af25681f2657226561b31eab1190 *man/iso_female_sequence.Rd
288cfeea93632b1317b501634f299752 *man/load_population.Rd
ddef741c23a4802c03b637b251c41492 *man/migration_settings.Rd
7d30f3e4989796982aac550aff399ad9 *man/plink_to_genomeadmixr_data.Rd
2214cfa4c87d11f2f68db5b2a0f0ea48 *man/plot.individual.Rd
09a31f2e3972603dd26c8a506e95bee9 *man/plot_chromosome.Rd
08014b02cff3b1ae8b74d7bb221af355 *man/plot_difference_frequencies.Rd
db081cf524c50d02f71c7fd8d7968340 *man/plot_dist_junctions.Rd
00a63ed42747fb526678a572b090fc8f *man/plot_frequencies.Rd
cc6e24af687708d16649df07bb697ded *man/plot_joyplot_frequencies.Rd
51988aba2c9ed1af008f2b550afdc2c5 *man/plot_over_time.Rd
64d92721d2ebe661146b7ae7451b23f4 *man/plot_start_end.Rd
7e1e22db424c8c8d4a9973bf212b452f *man/print.genomeadmixr_data.Rd
457039c3ed7ee90aef5078e69f4eca3b *man/print.individual.Rd
7639e9ed36aa37b7ec2a1d366d091ad0 *man/print.population.Rd
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d1a61fb6f6dadedc57c0f42f96a06321 *man/save_population.Rd
d30f553b5099b3a4eb6f4192c469d207 *man/sequence_module.Rd
60d1ddaa204ad84176490bd33aa22406 *man/simulate_admixture.Rd
72267e4ce4398f943328fc470d39e0e0 *man/simulate_ancestry.Rd
118f4387740d888b593a10ab124355fd *man/simulate_ancestry_migration.Rd
6747b6ea838920313727aa2f4b546886 *man/simulate_sequence.Rd
644678b8b5f6bd2a54eb6e6e02e489b6 *man/simulate_sequence_migration.Rd
922a5d22da9eed724874e5d274f34c70 *man/simulation_data_to_genomeadmixr_data.Rd
9d38a71e73d0055f01489727ac4808e3 *man/vcfR_to_genomeadmixr_data.Rd
6ae1bc9f057aac2a1c1ff264a63cc06b *man/write_as_plink.Rd
df7ead60462a45d977d071bbbb6e8ecb *src/Fish.cpp
155df9e31761d1b5fd05c431d094c92c *src/Fish.h
d4f20c5f075219aa7f1da5c8707422dd *src/Fish_emp.h
b99e0a6cc7b11ec6bdca5f61e28e58de *src/Makevars
c956da317864d95f28851a642f9df740 *src/Makevars.win
7158e7c4681a4bf0bc00afc7fa38ba78 *src/RcppExports.cpp
74d4385e48a780c9513d94b6e59e7ed7 *src/helper_functions.cpp
ef294af748968aa0e2aec39346c1a7bf *src/helper_functions.h
abf9313bdaa4416ae332a04be9330c56 *src/random_functions.h
fd950ca2b3b6fb44606401534cf92a20 *src/simulate.cpp
ba29138461dff8dc2a61e4ce889df0ac *src/simulate_emp.cpp
c13874f6ba3b634bd0976ff9f650fe5f *src/simulate_migration.cpp
25536bc52de8f00f98373e0eaa3d3403 *src/simulate_migration_emp.cpp
120850808feec7e5fe0598b14ecc083f *tests/testthat.R
b17364896797effc4df85709c7eca553 *tests/testthat/Rplots.pdf
7b0f38cbcbef0a0f2e2d8d9706f4bd2c *tests/testthat/test-LD.R
225b004feee80c3c9281a4fde5fb2be3 *tests/testthat/test-allele_frequencies.R
627c727655ffb010c0e7bff0a52f6451 *tests/testthat/test-combined_input_data.R
3a219ed720d789f354a692f75a585fcc *tests/testthat/test-fst.R
d6f20ad01a1d5984ca69383a79898665 *tests/testthat/test-general_usage.R
0a3559418f5db70be06d906f42cd5832 *tests/testthat/test-isoFemales.R
d34cb5df5b7ae3065cc10b8ba54f026b *tests/testthat/test-joyplot.R
6fba0fdcbd807291f973ed81963a4c87 *tests/testthat/test-junctions.R
3459d27d0b7c12d45e7aade84e18fbc9 *tests/testthat/test-plink.R
03d9af1a2dd649e53469dc8d8e87a87b *tests/testthat/test-save_load.R
078bb6a383a47dde18f87267c57c68b2 *tests/testthat/test-selection.R
59651e605ab275d975fc5772d414acf7 *tests/testthat/test-simulate_admixture.R
07e00a877eec348a4ed616df83890cba *tests/testthat/test-simulate_admixture_data.R
784f5ffc74023b0e8d7d42e8de233e2b *tests/testthat/test-simulate_admixture_migration_data.R
b8b0798d3950586671c3ce4883d6e09c *tests/testthat/test-simulate_admixture_until.R
7a5e548e244e38ac03e9e171cc1f0e26 *tests/testthat/test-simulate_migration.R
8b42ed5fe00577a1850be9668b2f19b5 *tests/testthat/test-utilities.R
f5715360a7672bf002436ec1fc65ab76 *vignettes/Demonstrate_isofemales.Rmd
609ee2c49acbfe9a2d82e8206f000491 *vignettes/Empirical_data.Rmd
d69c802701a121b5cde3c23f5df4663c *vignettes/Joyplots.Rmd
d5d9506b768eb6652aa1f7fa3ed7792d *vignettes/Visualization.Rmd
f3e1d55d351fc392bc0fdcbaec0cf6e6 *vignettes/Walkthrough.Rmd
