6b1a383eb2f662185ab0c31253fb9de9 *DESCRIPTION
dc08281550355ae8e572262247a5f339 *NAMESPACE
4db1df3c0073ba22a9a092d7f455be58 *R/RcppExports.R
5419559215ec675ea44cd6a14e1ff729 *R/calculate_allele_frequencies.R
16b85cbc3f01d1db2db5f392563486a2 *R/calculate_frequencies.R
ae51d3e9cff3d60208042a2fd42c9ac0 *R/calculate_fst.R
d5ad35c944fa3a6cc57235a71701c65d *R/calculate_heterozygosity.R
cea2f4b2cef71d1abf33dc54f7d5a39c *R/calculate_ld.R
bb39d452929921bf62cf7b57a321219e *R/calculate_marker_frequency.R
4f5fe994a914722c3152be66e3491fe2 *R/iso_female.R
db6b526a8955bb4cb414804fe5c56a83 *R/joyplot_frequencies.R
5145652ce242912af73dbda80fc58141 *R/junctions.R
a8418d3cdefec86a9fbc0492790227bb *R/plot_chromosome.R
9810e038b478d5b08e802779571a43ca *R/plot_difference_frequencies.R
f5e6a0ad73daf8dfe8235ea33d4efc7e *R/plot_frequencies.R
e1d7f20b2bc5e518fc8f1df6df17d141 *R/plot_over_time.R
cc84e91ac48290853eb3254b9c0d474e *R/plot_start_end.R
7572eacc03cd4c737e1beea25f416224 *R/save_load.R
99d9056a1d23209cddb4e8f1eae66fc6 *R/simulate_admixture.R
38df3d898ba93a26eff6a279f92d4a78 *R/simulate_admixture_migration.R
6f6d5d1a33b0d8162745253e747b1868 *R/simulate_admixture_until.R
0b69d4414248335de2613eba0a619e21 *R/utilities.R
87144f90b093997386b4561c9f2e1b3d *README.md
dd182865e3e349a4981c780bfc357bb7 *build/vignette.rds
b8e8f96606d2175693e36cf00ebca9a9 *inst/doc/Demonstrate_isofemales.R
3374299ffea2b21dde15fd26333c07b5 *inst/doc/Demonstrate_isofemales.Rmd
41c0b14da33a4b3abb71854d693ef049 *inst/doc/Demonstrate_isofemales.html
2dc8d0acce4eaf28aa5d1be2057a0b02 *inst/doc/Joyplots.R
1c2bdffef9adf276a81e0e2801256dca *inst/doc/Joyplots.Rmd
d191ab7df45a1331a982a8490caf9221 *inst/doc/Joyplots.html
fc86afce509dd556e404139d709bc8db *inst/doc/Visualization.R
adced68464953f97309cb673a48995f3 *inst/doc/Visualization.Rmd
b62d74c2c539c1c662f1dec756a23ff4 *inst/doc/Visualization.html
c8fb370f60d93cc86dd92eeca8f9ad64 *inst/doc/Walkthrough.R
b592b046b41f2f1f531c9ed183738571 *inst/doc/Walkthrough.Rmd
04bde1f5ae858266603f78016e752822 *inst/doc/Walkthrough.html
36ae38445873750a61d4b66d04ef119a *man/GenomeAdmixR-package.Rd
c213903961b676d896c9e7aa76f4a06d *man/calculate_allele_frequencies.Rd
e6ab4b310bc672d470a375a3d713114e *man/calculate_average_ld.Rd
790975f96816121022a027f671db5f4f *man/calculate_dist_junctions.Rd
d75b0eb5ce2995b25640e9af48fac375 *man/calculate_fst.Rd
ea6463130168017f483a099008410eb9 *man/calculate_heterozygosity.Rd
22f669776201a724ef5bdf0a3ac416ec *man/calculate_ld.Rd
67e440a884a6fa95206cfc3e82510489 *man/calculate_marker_frequency.Rd
b0e6e23ec5c1d48a118edb3552a97a8b *man/create_iso_female.Rd
288cfeea93632b1317b501634f299752 *man/load_population.Rd
2214cfa4c87d11f2f68db5b2a0f0ea48 *man/plot.individual.Rd
e267762f2b8991809c90d5f243390f7a *man/plot_chromosome.Rd
9126dfdc9ff872a8e6889cb86e8f8f8c *man/plot_difference_frequencies.Rd
db081cf524c50d02f71c7fd8d7968340 *man/plot_dist_junctions.Rd
c3290c8982747be71bd3da7fdafc683a *man/plot_frequencies.Rd
ba3cbf816a18b22344889ab2be1ae1c0 *man/plot_joyplot_frequencies.Rd
7cc06ca2f086f4c6c6270d641832a993 *man/plot_over_time.Rd
53d923de182554de63a5d76b63749879 *man/plot_start_end.Rd
457039c3ed7ee90aef5078e69f4eca3b *man/print.individual.Rd
7639e9ed36aa37b7ec2a1d366d091ad0 *man/print.population.Rd
d1a61fb6f6dadedc57c0f42f96a06321 *man/save_population.Rd
24be04fdbbd6e7ab3ff1cdf9e7cc8600 *man/simulate_admixture.Rd
dba4a67c8fd3c6db4b86f2bcbb227a4a *man/simulate_admixture_migration.Rd
c556647f89267ec0434a4b692d421123 *src/Fish.cpp
6bff1da45c5edbde6193ee27e063fa2c *src/Fish.h
2ea30df53eb28a3c45a2c96550669843 *src/Makevars
2ea30df53eb28a3c45a2c96550669843 *src/Makevars.win
f1c423a5257ab2e0f3e8f4c59d66f931 *src/RcppExports.cpp
fab95c1827b2e721a76288bd6c4bcae6 *src/helper_functions.cpp
05f5ee6a24656f0b09f57a4a5482a5bc *src/helper_functions.h
b0795348fd2502a1d1c00d78f0d7d093 *src/random_functions.cpp
9cc9422efb4347bcf1a297c2290b34ff *src/random_functions.h
734bbc41f79e8fc697feac1501a4fbb5 *src/simulate.cpp
a63f3bdc92db49db7f5c597ebc506fbf *src/simulate_migration.cpp
120850808feec7e5fe0598b14ecc083f *tests/testthat.R
fdddc190ca2c905648701c37a5591e25 *tests/testthat/Rplots.pdf
ad9e904da64dc2b98be2b46e69bdc379 *tests/testthat/test-LD.R
7173cb19de7e20f28dc6db9c860fcef1 *tests/testthat/test-allele_frequencies.R
7d746c3c37a43aa364e75ea7f83e8080 *tests/testthat/test-fst.R
57f77824a1e5279ead73aabcf46f2849 *tests/testthat/test-isoFemales.R
52d401487ecc4014fd9a3725af77afb6 *tests/testthat/test-joyplot.R
635209b6772f42e830ce239d09ca4f98 *tests/testthat/test-junctions.R
b77abf3d73265781e1752a5843836e80 *tests/testthat/test-save_load.R
a88f98afb67d518dbf831f6b737b26e4 *tests/testthat/test-selection.R
c6fb20015be20f7ff228d4d1de93f26f *tests/testthat/test-simulate_admixture.R
e36995a771d2117a341675e4d7ab5285 *tests/testthat/test-simulate_admixture_until.R
5cd568608c7a0de4ca451d42ab56f413 *tests/testthat/test-simulate_migration.R
8113fff9227e3ac867e3d55225e9f4ac *tests/testthat/test-utilities.R
0f3aa308dc98d705111f4d517adc4c02 *tests/testthat/test.pop
3374299ffea2b21dde15fd26333c07b5 *vignettes/Demonstrate_isofemales.Rmd
1c2bdffef9adf276a81e0e2801256dca *vignettes/Joyplots.Rmd
adced68464953f97309cb673a48995f3 *vignettes/Visualization.Rmd
b592b046b41f2f1f531c9ed183738571 *vignettes/Walkthrough.Rmd
