e7d7071ff04347cbb538e31f23b460c8 *DESCRIPTION
2ecf262c2a0fa80e1cd568cf5073423c *LICENSE
2a0ab7d81e79c8bb5ffdf19a7814aa36 *NAMESPACE
89ff94b8b98cd7f8235dec446e8909c9 *R/ECS.R
f371459348d7634ae82283d37450686f *R/PAC.R
9459984ae145c9a903cec86ba05cd251 *R/RcppExports.R
39c0dd373f0d76d0cfdbf302ad9da760 *R/convert.R
40287062c47b19256eb63211537d7651 *R/generics.R
35e03d0d1c719a889cfc65d24192b3db *R/marker-overlap.R
e949eb1575b98d63d511b19a9638e34f *R/shiny-app.R
899cf629b6e7e7f24380ca6bcff82509 *R/shiny-comparisons.R
6ec2ca057ecf64c1f8464f639c07cb28 *R/shiny-feature-stability.R
47719571ccbc779827422ecb3edc12ae *R/shiny-graph-clustering.R
6a7e7d109279c3dffa01e72a89e70e46 *R/shiny-graph-construction.R
bc62ec72ca16e86e4b790cf3b5d4f6bb *R/shiny-info.R
38385e0b29485076c48faa406ac05598 *R/shiny-landing-page.R
b4f4093020f5d517142b5421a8bc8b1a *R/shiny-sandbox.R
1ea24cbe64022d2c4c1de13489fbc134 *R/shiny-utils.R
fef8135ad87f1ec8c7281f70cc6c5a20 *R/stability-1-dim-reduction.R
875efb9ffa7a56c3279d3e6cc7643752 *R/stability-2-graph-construction.R
7aff1e919686778d9fd74998266eec71 *R/stability-3-graph-clustering.R
6aa172def5d55149b5d5e102056cb465 *R/stability-based-parameter-assessment.R
f84b4204d972d35019d65666dcdf7d4e *R/utils.R
54a2649d08ee50f3c9fdff883f889586 *README.md
e590204a47ede07d92c640dc1daa1413 *inst/CITATION
d3fb9786137b3c1ced461744a040347f *man/Clustering-class.Rd
f57171b9b0fe4d3119cec8233c9855f0 *man/add_metadata.Rd
3ab8cb941bbcbcd4ddad6c35a352025a *man/assess_clustering_stability.Rd
6d2bb158b6f0d2c64a8a60fcfeb935f1 *man/assess_feature_stability.Rd
42ede78c9a4cb5c287d8bacf327de4af *man/assess_nn_stability.Rd
bafe84bad207d1705c8dc49e1736c7a3 *man/automatic_stability_assessment.Rd
9c021e4492345cbad62c3be2c67b04bc *man/calculate_markers.Rd
a8e94c91d0ffbfb9016bcba3b1bc212e *man/calculate_markers_shiny.Rd
463ba67ea420d40b983459d6fda8168c *man/choose_stable_clusters.Rd
d116a1e1f545b8c768b8c6ec979a15a9 *man/consensus_cluster.Rd
ad262a3ca2bc123aa76484a08857ee51 *man/create_clustering.Rd
8e4a1bd974897cadca4d6799a7b9307b *man/create_monocle_default.Rd
ad8c90bfc7beb02da1e6aeaed32cb5cb *man/create_monocle_from_clustassess.Rd
be7fbbd33cc2779a0f4f51af840d9a2d *man/create_monocle_from_clustassess_app.Rd
e463d146a4607f5f68fc7ae34a4e485f *man/create_seurat_object_default.Rd
a18286ec26e9e78c40a6c46fb7d289a7 *man/create_seurat_object_from_clustassess_app.Rd
e6d80c5e25c864bfabb8187dcdfd3899 *man/element_agreement.Rd
8abf516e44eeb22d091e395395956e42 *man/element_consistency.Rd
99926b45ee54730381b1aa2bef3a320d *man/element_sim.Rd
19da51a8118163a9cd9236c468a8f815 *man/element_sim_elscore.Rd
17bd24516ea2b78c23a548bdac949289 *man/element_sim_matrix.Rd
dfb69183ddcd8eab3815ff6edf1017cc *man/getNNmatrix.Rd
aa8d5c4eaba9a9bfa16d901e5e42cef1 *man/get_clusters_from_clustassess_object.Rd
ada2bac404e190b2520e0d4bff348c27 *man/get_highest_prune_param.Rd
610f6cdfcd6f3b20ecadf565224d7b77 *man/get_highest_prune_param_embedding.Rd
91a5cb2f6c4bf9566575efe9b8d2cc15 *man/get_nn_conn_comps.Rd
c9c45e8296b15b78d0c6906eb171e8ee *man/length-Clustering-method.Rd
175dac3633006e9e0b03e98ebfac10b1 *man/marker_overlap.Rd
dfdd2c3a07dacadb770fb66076c5ca12 *man/merge_partitions.Rd
d05d6156d30624bdba256681413344fc *man/merge_resolutions.Rd
836847dc0b525bbf9d235abc23a72da7 *man/pac_convergence.Rd
a8838382b4d8317da07ecec141d0f06d *man/pac_landscape.Rd
d6e8ac8259e6ff1e2a1ac05da87ef724 *man/plot_clustering_difference_facet.Rd
9faddfac7a87b04f723ef054ad61eb8a *man/plot_clustering_overall_stability.Rd
a1bcce91b31f8ef1a348bfe2d6793e38 *man/plot_clustering_per_value_stability.Rd
d2543f78bb2a5246542f03a9c46e911c *man/plot_connected_comps_evolution.Rd
a24619f5fd955d9497a8bed3740d3abd *man/plot_feature_overall_stability_boxplot.Rd
97efbce1faf3079c557e8872733e81bf *man/plot_feature_overall_stability_incremental.Rd
3140c89ccdbb1b3aa77f17e59aa89789 *man/plot_feature_per_resolution_stability_boxplot.Rd
c567fc130a128d50ab374163a71f042a *man/plot_feature_per_resolution_stability_incremental.Rd
c355b1cfab7cba2fdfa3dc8837c14322 *man/plot_feature_stability_ecs_facet.Rd
84a0199305ecd47a95499ceba4e0063d *man/plot_feature_stability_mb_facet.Rd
e66b2ea2ffed842a2f2d17c5c6d58508 *man/plot_k_n_partitions.Rd
a3f0da2ccc692edf8e5b2aa57c570dad *man/plot_k_resolution_corresp.Rd
923e55ca22d5baf0f417aba7e1ac6e11 *man/plot_n_neigh_ecs.Rd
b202fd3bbff590676e1f6207c722a526 *man/plot_n_neigh_k_correspondence.Rd
f63046331768522f6c1cb950e0b47e75 *man/print-Clustering-method.Rd
24c69ac5b2dd9956211376f2353d2adc *man/server_comparisons.Rd
d299d1b6d85a0ac7fae042529fdcc666 *man/server_dimensionality_reduction.Rd
aa3cc09b810542c850a809c8e64bbc45 *man/server_graph_clustering.Rd
83d890ff8551a854b3da67fd52a850f2 *man/server_graph_construction.Rd
265828af2f44bae664d7d989b065dfcd *man/server_landing_page.Rd
9981cac2f5b55676c04a9a36c993a8e9 *man/server_sandbox.Rd
e62481224376124d5bae83788cfa5026 *man/ui_comparisons.Rd
d50e516f29c57479a0cf9bdc93546df6 *man/ui_dimensionality_reduction.Rd
6d02f3299d8322a74c0fe1cfcc6fe2b5 *man/ui_graph_clustering.Rd
aeb8ca645cbbf724e2f92f1b41e6fe41 *man/ui_graph_construction.Rd
03ce26d8d38488d2c73a99c210b2d211 *man/ui_landing_page.Rd
984489afc16a6904818829102629ff36 *man/ui_sandbox.Rd
fb143eb09f0bf051e9bbac663535af88 *man/weighted_element_consistency.Rd
bb7239bbd848c276a0dd77b1b2619e82 *man/write_objects.Rd
7f06250cc80546f54b376ea68b584e75 *man/write_shiny_app.Rd
9c42d3b97b43caf542f915ba1f390b25 *src/RcppExports.cpp
70742b5124ffa87c7f5bfb73e6ddb9b4 *src/calculate_ecs.cpp
93c95462c01277247c97e577b032bfc3 *src/calculate_pac.cpp
81cfbc16cba7a3d4e1bfbdba8f827348 *src/optimise_snn.cpp
ca9dc2c743015390fe29b1064b49f551 *src/update_connectivity.cpp
4dd80c6042e03044b12d3c7486f9314f *src/wilcox.cpp
e21dcde2c6bfb8952627cde3a98869be *tests/testthat.R
f2ad319e1aa274a8d00a13a920bbb5f3 *tests/testthat/test-ECS.R
