a1a6e8fead3753a17d67c7c2561bf8c5 *DESCRIPTION
ef3a3a59ec97f688378355e4c9b994b2 *NAMESPACE
d90252013aae8655a8ffa984523632a5 *R/BED.R
fb2895208fcab7af85f43273c738d3dd *R/BEIDList.R
01a170ae088d762d02a4eae48ee5c8f6 *R/beIDsToAllScopes.R
50e54e1e11ef31b0ed876c864fc7ace6 *R/bedCall.R
c528514826561875d6802c5f6a0e3452 *R/bedImport.R
098880b03e4ef06796dbf24fe03eeaaa *R/beidsModule.R
1e1d3e4b5640e02aa8092c9cf63b2d51 *R/cacheBedCall.R
99e0584a9cc7dc76e36f93113aa6dd0f *R/cacheBedResult.R
723f277a24a5d741d50d4453acb43552 *R/checkBeIds.R
6c63c3ae358b3603cc83ef9372b45ec8 *R/checkBedCache.R
66acd469162259683840948778dec3c9 *R/checkBedConn.R
69dd97b3942e673242e49be7e07ac816 *R/cleanDubiousXRef.R
11d50145f43754d594a5615343b86a51 *R/clearBedCache.R
c52a0c62fa9ac8ece41bd8eb25a482d6 *R/compareBedInstances.R
f1829ff87e10e88edc645d9610bb527b *R/convBeIdLists.R
2b9b2be5999967a27822c161c9169d6f *R/convBeIds.R
ffc0984ef220c2e913354c274091484f *R/convDfBeIds.R
20a60719fed09c764564d3a100b0eea9 *R/dumpEnsCore.R
ea653f2b7017aac5f2977bdf30fc0185 *R/dumpNcbiDb.R
3d0a287280564f46ebeba9f2e196fe0f *R/dumpNcbiTax.R
20753d88e09995b02b7154cf593f4537 *R/dumpUniprotDb.R
fd266001ffa2f340f0d7816d7b92fe92 *R/exploreBe.R
c64fed349c78edb7f5b84dd9fa8abb3b *R/exploreConvPath.R
e26eeb882e8fa3785dc3ed3ad43ff1ed *R/findBe.R
6e4882526df183d902278996719c97d5 *R/findBeids.R
dfc34ef0f0cec24cc212b6f8d9205a59 *R/firstCommonUpstreamBe.R
3f93f83c349f204bb10bc12e8bf48867 *R/genBePath.R
3d9e8ba38e5ad0e58860c5c6cb2eedcf *R/genProbePath.R
e1ae99552e98e29b74693bebb4eaa57d *R/geneIDsToAllScopes.R
a2a3f794c5365d765ad41d0a9aa9dead *R/generics.R
766096a615540d8fc997bef95c3aaa46 *R/getAllBeIdSources.R
d70afdb9fc339d6a8d9e5118ff29d87a *R/getBeIdConvTable.R
8bf4751a8525c40639331ee71680b36d *R/getBeIdDescription.R
e505e2071d173cc67781c7f4f06fb43d *R/getBeIdNameTable.R
9933299a8f73df0ecf286eb6a18b6511 *R/getBeIdNames.R
c39f5814ac3c71d7fb11bdef4c01c8aa *R/getBeIdSymbolTable.R
23f3a08031039110aeb1b1b7b73f9884 *R/getBeIdSymbols.R
4c248ead830bcb3f9c04c17c86ff0c69 *R/getBeIdURL.R
49b560acf7dd3a74a4a7aff559b4b377 *R/getBeIds.R
3b02037125fbb3028886bf739ae2819a *R/getDirectOrigin.R
980a8c5b7ce448164e4f5d12ddc4c483 *R/getDirectProduct.R
2f37cfb78bced99176aaa801e1ea86e0 *R/getEnsemblGeneIds.R
23fd7f2a3902148d9bfcc851d05795c4 *R/getEnsemblPeptideIds.R
6b581a6668ddb464014e20fe68a0424c *R/getEnsemblTranscriptIds.R
b4cda0597c0e7fc70003ba9c45a95ee0 *R/getGeneDescription.R
53931986fda3120acfd881465d6395a4 *R/getHomTable.R
e6a007939b955e3e2bfd956aebbbfaa7 *R/getNcbiGeneTransPep.R
7cafd29887b2e526de44123a81f547a3 *R/getOrgNames.R
931d25ae1b98aea87d609d9d87ecd2b1 *R/getRelevantIds.R
50068375ce263547564ab0d28d2bf835 *R/getTargetedBe.R
2f02b90f7b3ede944a01f40758c21d4f *R/getTaxId.R
c1d6d5c1214db50c9965fd2876837296 *R/getUniprot.R
d78f5e731234da64c2b509bd19406da2 *R/guessIdScope.R
a7db2d91e207df1d114122acaed71c05 *R/identicalScopes.R
f43c322867dfc6df81c9be2833ca206b *R/largestBeSource.R
099645a34454dfca5f83d515eb8ba9ae *R/listBe.R
f12c37e6fad347356a843683a2d7e537 *R/listBeIdSources.R
31d2a754f4e0cc99f76d04042c19246e *R/listDBAttributes.R
39e0cd15d6016e5461320dd2d57b4ccb *R/listOrganisms.R
13980a6a6567629d1ecd9f1e49cfcc9e *R/listPlatforms.R
041ea3d28459bb958bcedc612e3bc41d *R/loadBE.R
ac153d3dec142c4ac076ce642abbc704 *R/loadBENames.R
cb7e736ff8504a47cee5046c31d8a645 *R/loadBESymbols.R
1667085baf084dfe9efa363af370f000 *R/loadBEVersion.R
2b70eb903c26638b81accfbc7027cfa3 *R/loadBeAttribute.R
d9ca53374ba2bf25c29d2f75e3fa65de *R/loadBedModel.R
98e5ce2b97c373fac0ec4438da87a75e *R/loadCodesFor.R
100d5a824850fe081f6d4f876e987354 *R/loadCorrespondsTo.R
d8ae4fa2977a01a51d2239fe51a11b03 *R/loadHistory.R
d099d6a2a3b5e0f26edb0d2aee00282a *R/loadIsAssociatedTo.R
5b95471b8bb1607b7eb9ec24d29d7bed *R/loadIsExpressedAs.R
de9a50fade3e02b3d84d9bbabfcab6b5 *R/loadIsHomologOf.R
267f085d41ad6ba21c2ca2f4ac2fd1c9 *R/loadIsTranslatedIn.R
b961a58138071285c2d3d9d0a76e6a96 *R/loadLuceneIndexes.R
608290133da28b69e84a625697eb1a3f *R/loadNCBIEntrezGOFunctions.R
8815c6369bca27d784a21299ada49cff *R/loadNcbiTax.R
dabb7082d7302bcfccc145d329267298 *R/loadOrganisms.R
44af9040e4954e0cd04a6e5447e8ec7a *R/loadPlf.R
117c0c6ad58f7d85064ef9cf3fc7054a *R/loadProbes.R
e55cf21bd0e7791b6e70148821c846be *R/lsBedCache.R
64ac22bafc262ea4f96aaed3de22f483 *R/registerBEDB.R
0dae20100c32de5303466a13daf5b447 *R/searchBeid.R
fe5d9adb7117a7ed51f89b2006fb3d94 *R/searchId.R
e783fde230494886a98b6f2b3e4eb58f *R/setBedVersion.R
e40cad9eba9605341279576b6138dd26 *R/showBedDataModel.R
1d0f5483a947c8c544a83b4dd27bf2e0 *R/zzz.R
7e87988ec2754cc1b1a7ae08be4b0bc3 *build/vignette.rds
bdd0c4e36060acbcceb9e7d38c9d3bba *inst/CITATION
e8fe7193da39b426a1e37ec76f230d43 *inst/Documentation/BED-Model/BED-lucene-v3.cql
4a7093f32ddfb58115147e2a07a8df37 *inst/Documentation/BED-Model/BED-lucene-v5.cql
73e70120f9e9bb403d496f1e57bb3119 *inst/Documentation/BED-Model/BED-model-v3.cql
28131a5af9fa7de768125491a71bf766 *inst/Documentation/BED-Model/BED-model-v5.cql
f32d409ec2c9c6d0f9a7a47a328f5d1e *inst/Documentation/BED-Model/BED.html
1f6f759f94ef12f734ef1d4f6dba18fe *inst/Documentation/BED-Model/BED.png
d26d558fbda839b343c9b57faea7773e *inst/Documentation/BED-Model/BEType.cql
32038ad1145083c1cad8f5d6df1bce89 *inst/doc/BED.R
15882a7355471d2c8ef3fc3666168a60 *inst/doc/BED.Rmd
af13c9a0cb92423543f67c16fad3dcfa *inst/doc/BED.html
ec48a6d0dc62c401d84c579f1c4ea019 *inst/pkgdown.yml
047790282bfbf8520ba578391de70296 *inst/rstudio/addins.dcf
9482cd06d1724de3949d886ea19072e9 *man/BED.Rd
1223a7ee943c3660b3214bbdf6d36ca5 *man/BEIDList.Rd
d8e10e6f83b2fba8a4139709358223eb *man/BEIDs.Rd
9ffcdd21b31bbfa7f13246a06b970fa7 *man/beIDsToAllScopes.Rd
345c128a387c2cfc5ec11d2d8cd8876d *man/bedCall.Rd
6b75233e6b8d2bad3227777cc362728e *man/bedImport.Rd
a47044c83a06d3a331ffc3f01a4a25a4 *man/beidsServer.Rd
546a0c888decf15043abf0d1cdc3e5bc *man/cacheBedCall.Rd
f634499940d5d4db4b036b05c32d96b0 *man/cacheBedResult.Rd
9cbbbfdc6436f42740b6ebd4d0f44495 *man/checkBeIds.Rd
17e081e697c309d795ab391e96e07c1a *man/checkBedCache.Rd
7583e5ab03e1f6daf080f2151198f988 *man/checkBedConn.Rd
2260c09767bbdbdd33e44cf572d84fe8 *man/cleanDubiousXRef.Rd
6c16303878d67eaa4c0d45b7eff9951d *man/clearBedCache.Rd
090f31964e251eb5a1f0e4843d1f7685 *man/compareBedInstances.Rd
09a6626667a8bbdf725c8c3dd51245ae *man/connectToBed.Rd
df25e04e03616b0e076326444d0f9cd2 *man/convBeIdLists.Rd
4d2244b2c7ed1c94830fc47891533b9b *man/convBeIds.Rd
d6456629d76128e9af83ecb167f1e217 *man/convDfBeIds.Rd
41f1ab11998e730cfaa286f1397b0fca *man/dumpEnsCore.Rd
1050501ad083eda2ca59e0b11caf2ea3 *man/dumpNcbiDb.Rd
19d8987366949700a3b7ed4ed3938097 *man/dumpNcbiTax.Rd
c25c7936c8c3726aa830bdaf6fbd26d3 *man/dumpUniprotDb.Rd
e0c65aaa713f35172428bb565b86fb00 *man/exploreBe.Rd
73e87f986c8bb0d0b324f6d78e761672 *man/exploreConvPath.Rd
099fdd3669331886344cc58bdc5dcb8f *man/figures/BED.png
527359cb905ad0b47cc9d2b45ea06ec5 *man/filterByBEID.Rd
aa687a17cf1e8247b34cb68bde01d7a6 *man/findBe.Rd
f1ac2ae03f4b08dd7215237638a5b0b1 *man/findBeids.Rd
c7e7964082689f90a770e42317736d1f *man/firstCommonUpstreamBe.Rd
1eb17cf345d9f2945980b2cc71ab1250 *man/focusOnScope.BEIDList.Rd
c3ec0a169cbb476ee363a0222cfd341a *man/focusOnScope.Rd
9310fd5c0cb497705e857019eb3319ce *man/forgetBedConnection.Rd
76249eef955be295a1b2ff1d74eeeda2 *man/genBePath.Rd
eea098af7b541910f8b21e73c41170e9 *man/genProbePath.Rd
451ee668f8df1507dfdf41126d51fae0 *man/geneIDsToAllScopes.Rd
6dba88b5a62026dc6ef8646daad82682 *man/getAllBeIdSources.Rd
6819b1f8bdde21c4d628ba2a47bf3a05 *man/getBeIdConvTable.Rd
297f589903be818f4bf14d1e29a129b6 *man/getBeIdDescription.Rd
e7297cda50b5bb75710b7f970633bdb7 *man/getBeIdNameTable.Rd
80a9e8d623ff692f125b730fccbd1311 *man/getBeIdNames.Rd
c011e72a141db6f461616bf86dd2d194 *man/getBeIdSymbolTable.Rd
3c3fd78f371e5abd1a229a82f917c50c *man/getBeIdSymbols.Rd
6143c2b87abdb44a0c6331ad582a3775 *man/getBeIdURL.Rd
1ae70de4a1f1c600d117906aa248bebc *man/getBeIds.Rd
ced66521c6872137609bc162d7f2cf70 *man/getDirectOrigin.Rd
2de940aea98d168341d2c863a65509f1 *man/getDirectProduct.Rd
1de9bd9bbb85162bce62ddecead07591 *man/getEnsemblGeneIds.Rd
7a48b0430884b99a21827e7aff12e99e *man/getEnsemblPeptideIds.Rd
4f78484ddf44821c4ee0bbd87a18e1a2 *man/getEnsemblTranscriptIds.Rd
ce2d868260c35fc3c8ac1a7fbaa672ad *man/getGeneDescription.Rd
1e8df332bcb47013072b79c87dc93d47 *man/getHomTable.Rd
d285688e8dcbcf580b16adee53ffa0a0 *man/getNcbiGeneTransPep.Rd
7027b60ee981d12cb51f6356794f2ead *man/getOrgNames.Rd
96a5dea153875960f5e4bf54293625dd *man/getRelevantIds.Rd
255a288a84f9b271637176e2c5506672 *man/getTargetedBe.Rd
4b3d53cc280ed32a14d68f979525e447 *man/getTaxId.Rd
f096c9c805f78a881d20403937ba0d1e *man/getUniprot.Rd
d94aa40509d566523a8760b4c9c78963 *man/guessIdScope.Rd
42a44ad73a66e3f9e2a4b070e195779e *man/identicalScopes.Rd
b77df90a0c3a2860f8eb8a0686139df2 *man/is.BEIDList.Rd
f57c9534917a5455812db163a1323c54 *man/largestBeSource.Rd
bce5efad52c4a86c12bb614f438a5373 *man/listBe.Rd
61bd0e7945af3448f037928e9bf56b1c *man/listBeIdSources.Rd
17debe4c0fc582dd4b169b5a5e5f0f6d *man/listDBAttributes.Rd
95b18b1f59fd667a97638174537a5a1a *man/listOrganisms.Rd
c704e84389f6b2587812e65f84bb1724 *man/listPlatforms.Rd
7e9da455feee133c1e1473db7ac988cf *man/loadBE.Rd
ad22d58485f152d320f7b68f1a41d60a *man/loadBENames.Rd
7321f79f312adc4943972ca87094fb2e *man/loadBESymbols.Rd
58b1440244c074a0030013254be4ea10 *man/loadBEVersion.Rd
1eaad759d61448a28879f64de7de25e5 *man/loadBeAttribute.Rd
aaa3366c72b3a3c58deeab5c7f07e229 *man/loadBedModel.Rd
0e4972d41abdbe4b411f2ad5a1ab98f5 *man/loadBedOtherIndexes.Rd
5d8b140089de2d9e5210a0c2db0f578f *man/loadBedResult.Rd
86f9a9314edd33f57af74f5829c4714a *man/loadCodesFor.Rd
69baf745e305d6cd8f76c59ad282e401 *man/loadCorrespondsTo.Rd
cdcfa80d8ba8be201af293edaef4d02b *man/loadHistory.Rd
aaf80447e97248bc14fb555e174bfc76 *man/loadIsAssociatedTo.Rd
6582c2344388829f09a7af529efe06fe *man/loadIsExpressedAs.Rd
44b29f8545e38b7d670acd18335bfa1c *man/loadIsHomologOf.Rd
600f8a2872d22c18f815edb8560b0103 *man/loadIsTranslatedIn.Rd
696cbe1d81c61b123a1d1ea1b23a3296 *man/loadLuceneIndexes.Rd
dbc7b8e0085eb33e7900a2da713f7ef0 *man/loadNCBIEntrezGOFunctions.Rd
b130a1c9fe8f92bbde191e8e6f7d39f0 *man/loadNcbiTax.Rd
2a3a91a4a0be54f104c471116009c00e *man/loadOrganisms.Rd
b87440ce9084e94e917c03a85ee0a7de *man/loadPlf.Rd
a987c03c4925a5e97f7ebbfb2089c9ff *man/loadProbes.Rd
ff566558c4cf6b3144ccb8684a2058fa *man/lsBedCache.Rd
21a1104b02e0a2c96acf5b5550edd1ee *man/lsBedConnections.Rd
8921f39d6571a97ccc76fee05a06feca *man/metadata-set.Rd
0066c7c9105248c016733c9a290efc30 *man/metadata.Rd
20212694bdc0520cc6021983a41f3527 *man/registerBEDB.Rd
43e2c1c8502186527f959f1597cb7b81 *man/scope.Rd
8af9797aeb606f0db4b50df621a9d2e2 *man/scopes.Rd
1650ce2d6b1956d20c360053c8b85131 *man/searchBeid.Rd
09df74fdfe5a95314e7fabbb262074b7 *man/searchId.Rd
328215a8c07fd4d16f64353c0f83ed59 *man/setBedVersion.Rd
0913f7c2c7276643413898f9c6d380a6 *man/showBedDataModel.Rd
15882a7355471d2c8ef3fc3666168a60 *vignettes/BED.Rmd
1f6f759f94ef12f734ef1d4f6dba18fe *vignettes/img/BED-data-model.png
099fdd3669331886344cc58bdc5dcb8f *vignettes/img/BED.png
