Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model

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Documentation for package ‘bayesammi’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.data.frame.bam_result	Methods for bayesammi results
as.data.table.bam_result	Methods for bayesammi results
as.mcmc.list.bam_bayes_ammi	The draws of a fit for posterior, bayesplot and coda
as_draws.bam_bayes_ammi	The draws of a fit for posterior, bayesplot and coda
as_draws_df.bam_bayes_ammi	The draws of a fit for posterior, bayesplot and coda
bam-draws	The draws of a fit for posterior, bayesplot and coda
bam-methods	Methods for bayesammi results
bam_ammi_indices	Posterior distributions of AMMI-based stability indices
bam_app	Bayesian AMMI and GGE analysis in a web browser
bam_app_object	Bayesian AMMI and GGE analysis in a web browser
bam_cite	References of a result or of the package
bam_compare	Compare Bayesian AMMI and GGE models
bam_indices	Posterior distributions of classical stability indices
bam_interpret	Interpretation of a Bayesian AMMI analysis
bam_notation	Notation of bayesammi
bam_ppc	Posterior predictive checks
bam_predict	Predictions of every genotype-environment cell
bam_priors	Prior distributions of the Bayesian AMMI model
bam_ranks	Posterior distribution of the ranks of the genotypes
bam_reference	Published values used by the tests and vignettes
bam_save	Save a figure (vector PDF by default)
bam_stability	Bayesian stability of the genotypes
bam_stab_priors	Priors of the Bayesian stability models
bam_superiority	Probabilities of superior performance and stability
bam_theme	ggplot2 theme of bayesammi
bam_winners	Which genotype wins where: posterior probabilities
bayes_ammi	Bayesian estimation of the AMMI and GGE models
bayes_ammi.default	Bayesian estimation of the AMMI and GGE models
bayes_stability	Bayesian stability analysis: Finlay-Wilkinson, Eberhart-Russell and Shukla models
biplots	Biplots with highest posterior density regions
biplots.default	Biplots with highest posterior density regions
e_eff	Environment effects
e_eff.default	Environment effects
format.bam_interpretation	Interpretation of a Bayesian AMMI analysis
format.bam_result	Methods for bayesammi results
ge_ammi	Least-squares AMMI model
ge_ammi.default	Least-squares AMMI model
ge_eff	Genotype-by-environment interaction effects
ge_eff.default	Genotype-by-environment interaction effects
ge_mean	Genotype-by-environment means
ge_mean.default	Genotype-by-environment means
ge_model	Linear mixed model of a multi-environment trial
ge_model.default	Linear mixed model of a multi-environment trial
ge_var	Genotype-by-environment variances
ge_var.default	Genotype-by-environment variances
g_eff	Genotype effects
g_eff.default	Genotype effects
Maiz	Maize multi-environment trial
matrix_k	Orthonormal contrast matrix
matrix_k.default	Orthonormal contrast matrix
orthnorm	Gram-Schmidt orthonormalisation
orthnorm.default	Gram-Schmidt orthonormalisation
plot.bam_result	Methods for bayesammi results
print.bam_interpretation	Interpretation of a Bayesian AMMI analysis
print.bam_priors	Prior distributions of the Bayesian AMMI model
print.bam_result	Methods for bayesammi results
print.summary.bam_result	Methods for bayesammi results
summary.bam_result	Methods for bayesammi results